View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9940_low_6 (Length: 445)

Name: NF9940_low_6
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9940_low_6
NF9940_low_6
[»] chr8 (2 HSPs)
chr8 (349-430)||(13403071-13403152)
chr8 (349-430)||(13397491-13397572)
[»] chr5 (1 HSPs)
chr5 (192-229)||(30080435-30080472)


Alignment Details
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 349 - 430
Target Start/End: Complemental strand, 13403152 - 13403071
Alignment:
Q  349 cttcatagattaacactatctcacattgatcatgtgttaaataaatttaactgcagagaaaaccttacttttgtggaagagg 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13403152 cttcatagattaacactatctcacattgatcatgtgttaaataaatttaactgcagagaaaaccttacttttgtggaagagg 13403071  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 349 - 430
Target Start/End: Complemental strand, 13397572 - 13397491
Alignment:
Q  349 cttcatagattaacactatctcacattgatcatgtgttaaataaatttaactgcagagaaaaccttacttttgtggaagagg 430  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13397572 cttcatagattatcactatctcacattgatcatgtgttaaataaatttaactgcagagaaaaccttacttttgtggaagagg 13397491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 30080435 - 30080472
Alignment:
Q  192 ttgcacagacacttctaattgaaggagtgtctcggtgt 229  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  30080435 ttgcactgacacttctaattgaaggagtgtcccggtgt 30080472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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