View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9940_low_9 (Length: 421)
Name: NF9940_low_9
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9940_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 41522118 - 41521710
Alignment:
| Q |
19 |
ccatcatcaccactatgtcttaaatcaagtgtgagatcaggtaggttcaaaaacatgtcatcctcacccttcaatgatgatccttcattgtgactcgaag |
118 |
Q |
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| T |
41522118 |
ccatcatcaccactatgtcttaaatcaagtgtgagatcaggtaggttcaaaaacatgtcatcctcacccttcaatgatgatccttcattgtgactcgaag |
41522019 |
T |
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| Q |
119 |
aagaagaagacgaag---------------------cttggctcggctcggcttcagcttctaactcaatctgatcggtgattgcatggttataaacagt |
197 |
Q |
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| T |
41522018 |
aagaagaagaagaagacgacgacgaagaagaaacagcttggctcggctcggcttcagcttctaactcaatctgatcggtgattgcatggttataaacagt |
41521919 |
T |
|
| Q |
198 |
tgcggctgctttagcagcagcaacttggatgtctttaggagaggcactagctgcacgtggcagcacggcagctaattcgggaaaattgaggtaagccgaa |
297 |
Q |
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| T |
41521918 |
tgcggctgctttagcagccgcaacttggatgtctttaggagaggcactagctgcacgtggcagcacggcagctaattcgggaaaattgaggtaagccgaa |
41521819 |
T |
|
| Q |
298 |
gagcctttgatagtaagagcagccacatcatgagctctagcagccatatcaggagttggaaaagttccaagccaaattctggannnnnnncttggctctc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| |
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| T |
41521818 |
gagcctttgatagtaagagcagccacatcatgagctctagcagccatatcaggagttggaaaagttccgagccaaattcttgatttttttcttggctctc |
41521719 |
T |
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| Q |
398 |
taatctctg |
406 |
Q |
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| T |
41521718 |
taatctctg |
41521710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 3021315 - 3021250
Alignment:
| Q |
309 |
agtaagagcagccacatcatgagctctagcagccatatcaggagttggaaaagttccaagccaaat |
374 |
Q |
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| T |
3021315 |
agtaagtgcagcaacatcatgtgcacgtgcagccatttcaggagttggatatgttccaagccaaat |
3021250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 3030529 - 3030464
Alignment:
| Q |
309 |
agtaagagcagccacatcatgagctctagcagccatatcaggagttggaaaagttccaagccaaat |
374 |
Q |
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| T |
3030529 |
agtaagtgcagcaacatcatgtgcacgtgcagccatttcaggagttggatatgttccaagccaaat |
3030464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 3038184 - 3038119
Alignment:
| Q |
309 |
agtaagagcagccacatcatgagctctagcagccatatcaggagttggaaaagttccaagccaaat |
374 |
Q |
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|||||| ||||| |||||||| || | |||||||| |||||||||||| | |||||||||||||| |
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| T |
3038184 |
agtaagtgcagcaacatcatgtgcacgtgcagccatttcaggagttggatatgttccaagccaaat |
3038119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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