View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9941_6 (Length: 321)
Name: NF9941_6
Description: NF9941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9941_6 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 87 - 321
Target Start/End: Complemental strand, 32267846 - 32267612
Alignment:
| Q |
87 |
tacaaatatgattcttcatgaatagttttggagaatggataaaagtgttcatatatgtagagtgtagcaagataaattacggtagacatatttttatcat |
186 |
Q |
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| T |
32267846 |
tacaaatatgattcttcatgaatagttttggagaatggataaaagtgttcatatatgtagagtgtagcaagataaattacggtagacatatttttatcat |
32267747 |
T |
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| Q |
187 |
tacatattcggtggatgtaaagaattgnnnnnnnnnnnncctaccgtacgtgggttctaaaattcggcacttttgatagtacattgaaacgttgggtcat |
286 |
Q |
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| T |
32267746 |
tacatattcggtggatgtaaagaattttttattttttatttttcctaccgtgggttctaaaattcggcagttttgatagtacattgaaacgttgggtcat |
32267647 |
T |
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| Q |
287 |
ggtaaaatttcagtcctaaaatttgatgtgtcatt |
321 |
Q |
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| T |
32267646 |
ggtaaaatttcagtcctaaaatttgatgtgtcatt |
32267612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 32272030 - 32271836
Alignment:
| Q |
7 |
tcgaagaaaatcataacactttcttacaattatttatcgtgtcatttaggaattactatttagtgattccttctaggttctacaaatatgattcttcatg |
106 |
Q |
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| T |
32272030 |
tcgaacaatatcataacactttcttacaattatttgttgtgtcattttggaactactatttagtgatttcttcaagtttctatagatatga---ttcatg |
32271934 |
T |
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| Q |
107 |
aatagttttggagaatggataaaagtgttcatatatgta--gagtgtagcaagataaattacggtagacatatttttatcattacatattcggtggatgt |
204 |
Q |
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| T |
32271933 |
aata-ttttggagaatggataaaagggttcatttatgtattgagtgtagcaagataaattattgtatacatatttttatc--tacatattcggtggatgt |
32271837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 32271809 - 32271744
Alignment:
| Q |
235 |
cgtgggttctaaaattcggcacttttgatagtacattgaaacgttgggtcatggtaaaatttcagtcct |
303 |
Q |
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| T |
32271809 |
cgtgggttctaaaattcggcacttttgata---cattcaaacgttgggccatggtaaaatttcagtcct |
32271744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 32267901 - 32267860
Alignment:
| Q |
7 |
tcgaagaaaatcataacactttcttacaattatttatcgtgt |
48 |
Q |
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| T |
32267901 |
tcgaacaatatcataacactttcttacaattatttatcgtgt |
32267860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 319
Target Start/End: Original strand, 14446615 - 14446684
Alignment:
| Q |
247 |
aattcggcacttttgatagtacattgaaacgttgggtcatggtaaaatttcagtcctaaaatttgatgtgtca |
319 |
Q |
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| T |
14446615 |
aattcggcacttatgata---cattcaaacgttggaccatggtaaaatttcagtccttcaatttgaggtgtca |
14446684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 48170042 - 48169925
Alignment:
| Q |
19 |
ataacactttcttacaattatttatcgtgtcatttaggaattactatttagtgattccttctaggttctacaaatatgattcttcatgaata-gttttgg |
117 |
Q |
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| T |
48170042 |
ataacagtttcttacaattatttatcatgtctttttgaaactaccatccaatgattccttctaggttttataaatatga---ttcatgaatattttttgg |
48169946 |
T |
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| Q |
118 |
agaatggataaaagtgttcat |
138 |
Q |
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| T |
48169945 |
agaaaggactaaagtgttcat |
48169925 |
T |
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