View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9941_low_2 (Length: 406)

Name: NF9941_low_2
Description: NF9941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9941_low_2
NF9941_low_2
[»] chr6 (11 HSPs)
chr6 (4-166)||(31483673-31483839)
chr6 (4-189)||(32274191-32274386)
chr6 (72-189)||(17436495-17436612)
chr6 (53-181)||(4319099-4319227)
chr6 (53-159)||(12703852-12703957)
chr6 (118-179)||(14154577-14154638)
chr6 (115-170)||(14830418-14830473)
chr6 (115-168)||(14153382-14153435)
chr6 (123-168)||(14430972-14431017)
chr6 (123-168)||(7203956-7204001)
chr6 (120-169)||(35060897-35060946)
[»] chr5 (19 HSPs)
chr5 (4-174)||(759182-759352)
chr5 (4-174)||(34016024-34016194)
chr5 (53-174)||(5506626-5506747)
chr5 (72-179)||(6705989-6706096)
chr5 (53-179)||(28677903-28678029)
chr5 (53-166)||(30489753-30489866)
chr5 (4-76)||(38740552-38740623)
chr5 (58-171)||(11135766-11135879)
chr5 (123-170)||(33144189-33144236)
chr5 (123-171)||(1145166-1145214)
chr5 (123-174)||(33037386-33037437)
chr5 (123-181)||(7164754-7164812)
chr5 (124-174)||(17644606-17644656)
chr5 (123-189)||(30491800-30491866)
chr5 (118-167)||(19399519-19399568)
chr5 (138-179)||(25759857-25759898)
chr5 (53-110)||(28703964-28704021)
chr5 (4-45)||(30489884-30489925)
chr5 (118-170)||(4845327-4845379)
[»] chr2 (7 HSPs)
chr2 (4-189)||(8273252-8273437)
chr2 (10-128)||(22727781-22727899)
chr2 (4-86)||(22727865-22727947)
chr2 (120-170)||(2154288-2154338)
chr2 (120-169)||(12969266-12969314)
chr2 (115-171)||(11712983-11713039)
chr2 (118-158)||(42119195-42119235)
[»] chr4 (15 HSPs)
chr4 (4-172)||(23283661-23283829)
chr4 (53-189)||(12586733-12586868)
chr4 (53-179)||(24974081-24974207)
chr4 (53-174)||(36501800-36501921)
chr4 (53-174)||(55527848-55527969)
chr4 (53-189)||(45237418-45237554)
chr4 (115-166)||(45246978-45247029)
chr4 (120-170)||(46817434-46817484)
chr4 (115-189)||(47043986-47044060)
chr4 (120-169)||(34235706-34235755)
chr4 (72-179)||(51719728-51719835)
chr4 (123-189)||(27992122-27992188)
chr4 (120-169)||(33164507-33164556)
chr4 (115-180)||(53265808-53265873)
chr4 (4-45)||(55527789-55527830)
[»] chr3 (17 HSPs)
chr3 (4-174)||(39645796-39645964)
chr3 (4-135)||(35069173-35069304)
chr3 (53-189)||(34082846-34082982)
chr3 (72-189)||(53814515-53814632)
chr3 (60-189)||(7665740-7665869)
chr3 (53-189)||(15040688-15040824)
chr3 (53-172)||(19872076-19872195)
chr3 (132-174)||(40516996-40517038)
chr3 (120-170)||(53827663-53827713)
chr3 (123-171)||(26998292-26998340)
chr3 (123-171)||(50663900-50663948)
chr3 (115-165)||(2325558-2325608)
chr3 (129-179)||(40517534-40517584)
chr3 (87-136)||(4971183-4971232)
chr3 (120-169)||(6162684-6162733)
chr3 (4-45)||(19872017-19872058)
chr3 (124-164)||(2652942-2652982)
[»] chr1 (17 HSPs)
chr1 (4-189)||(28474799-28474984)
chr1 (4-189)||(33401415-33401599)
chr1 (53-189)||(33617651-33617787)
chr1 (72-189)||(28446485-28446601)
chr1 (53-174)||(48027031-48027152)
chr1 (53-113)||(33617911-33617971)
chr1 (53-174)||(35563382-35563495)
chr1 (115-171)||(39650221-39650277)
chr1 (53-169)||(35563532-35563640)
chr1 (115-189)||(45691045-45691119)
chr1 (120-168)||(45688336-45688384)
chr1 (114-169)||(28475978-28476033)
chr1 (124-189)||(45691196-45691261)
chr1 (124-189)||(45691338-45691403)
chr1 (121-170)||(50069237-50069286)
chr1 (359-395)||(3691357-3691393)
chr1 (5-45)||(35563658-35563698)
[»] chr8 (7 HSPs)
chr8 (53-189)||(5967172-5967308)
chr8 (53-189)||(34279496-34279632)
chr8 (57-189)||(31762248-31762380)
chr8 (120-189)||(33220789-33220858)
chr8 (118-189)||(43640973-43641044)
chr8 (4-45)||(34279437-34279478)
chr8 (359-391)||(10028763-10028795)
[»] chr7 (9 HSPs)
chr7 (53-189)||(5107-5243)
chr7 (52-179)||(38386191-38386318)
chr7 (53-173)||(38047669-38047789)
chr7 (92-189)||(5061702-5061799)
chr7 (53-174)||(19365330-19365451)
chr7 (118-170)||(48211806-48211858)
chr7 (53-135)||(8378045-8378127)
chr7 (123-168)||(26009397-26009442)
chr7 (4-44)||(38047808-38047848)
[»] scaffold0700 (1 HSPs)
scaffold0700 (58-104)||(4959-5005)
[»] scaffold0041 (1 HSPs)
scaffold0041 (123-189)||(24370-24436)


Alignment Details
Target: chr6 (Bit Score: 126; Significance: 7e-65; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 4 - 166
Target Start/End: Complemental strand, 31483839 - 31483673
Alignment:
Q  4 tcacgttacacattacactagcgcatgttaacttacgctaagttattctacaaataacactagcgcatgttaagtcacacaacg----tatcttaagtta 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    ||||||||||||    
T  31483839 tcacgttacacattacactagcgcatgttaacttacgctaagttattctacaaataacactagcacatgttaagtcacacaatgtatatatcttaagtta 31483740  T
Q  100 cgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatttactttaggaatga 166  Q
    |||||||||||||| |||| ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  31483739 cgttgtaatttgcactagcgcatgttaacatgcgtaggggcattttgattatttactttaggaatga 31483673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 189
Target Start/End: Complemental strand, 32274386 - 32274191
Alignment:
Q  4 tcacgttacacattacactagcgcatgttaacttacgctaagttattctacaaataacac-----------tagcgcatgttaagtcacacaacgtatct 92  Q
    |||||||||||| |||||| |||||||||||| |||||||||| |||| |||||||||||           ||| ||||||||| | |  |||| |||||    
T  32274386 tcacgttacacaatacactggcgcatgttaacatacgctaagt-attcaacaaataacacacaattaacactagtgcatgttaacttaggcaacatatct 32274288  T
Q  93 taagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    ||||||| ||| ||||||||| |||| ||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||| |||| |||||||||    
T  32274287 taagttatgttctaatttgcactagcgcatgttaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaatccatttgggcaatgagc 32274191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 72 - 189
Target Start/End: Original strand, 17436495 - 17436612
Alignment:
Q  72 gttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaa 171  Q
    |||||||||| ||||| ||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| | ||||||||||| |||| |||||||    
T  17436495 gttaagtcacgcaacgcatcttaagttacgttgtaatttgcactagcgcatgttaacatgtgtagggacatttcggtcatttactttgggaacgagcgaa 17436594  T
Q  172 tccgtttgagcaatgagc 189  Q
    ||| |||| | |||||||    
T  17436595 tccatttgggtaatgagc 17436612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 4319227 - 4319099
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    |||| ||||||||||||||||||| | |  ||| ||||||||||||||||| ||||||||| |||  ||||||||||||||||||| ||||| |||||||    
T  4319227 acaattaacactagcgcatgttaacttatgcaatgtatcttaagttacgttctaatttgcactagtgcatgttaacatgcgtaggggcatttcgatcatt 4319128  T
Q  153 tactttaggaatgagcgaatccgtttgag 181  Q
    |||||||| ||||||| ||||| ||||||    
T  4319127 tactttagtaatgagcaaatccatttgag 4319099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 12703957 - 12703852
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    ||||||||||||| ||  |||||| | || ||||||| ||||||||||||| ||||||||| |||| |||||||  || ||||||| ||||| |||||||    
T  12703957 acaaataacactaacgtgtgttaacttacgcaacgtagcttaagttacgttataatttgcactagcgcatgttagtatacgtaggg-catttcgatcatt 12703859  T
Q  153 tacttta 159  Q
    |||||||    
T  12703858 tacttta 12703852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 14154577 - 14154638
Alignment:
Q  118 cacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatccgtttg 179  Q
    |||||||||||||||| ||||||||||||  |||||| ||||||||||||||| || |||||    
T  14154577 cacatgttaacatgcgcagggacattttggacatttattttaggaatgagcgattcggtttg 14154638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 14830473 - 14830418
Alignment:
Q  115 tagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcga 170  Q
    |||| |||||||||||| ||||||||||||||  |||||||||| |||||||||||    
T  14830473 tagcgcatgttaacatgtgtagggacattttggacatttactttgggaatgagcga 14830418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 14153435 - 14153382
Alignment:
Q  115 tagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagc 168  Q
    |||| |||||||||||||||||||  |||||| ||||||||||| |||||||||    
T  14153435 tagcgcatgttaacatgcgtaggggtattttggtcatttactttgggaatgagc 14153382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 14431017 - 14430972
Alignment:
Q  123 gttaacatgcgtagggacattttgatcatttactttaggaatgagc 168  Q
    ||||||||||||||||||||||| | |||||||||||| |||||||    
T  14431017 gttaacatgcgtagggacattttaaacatttactttagaaatgagc 14430972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 7203956 - 7204001
Alignment:
Q  123 gttaacatgcgtagggacattttgatcatttactttaggaatgagc 168  Q
    ||||||||||||||||  |||||||||||||||||| |||| ||||    
T  7203956 gttaacatgcgtaggggtattttgatcatttactttgggaacgagc 7204001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 35060897 - 35060946
Alignment:
Q  120 catgttaacatgcgtagggacattttgatcatttactttaggaatgagcg 169  Q
    ||||||||||||||||||| |||||||  |||||||||| | ||||||||    
T  35060897 catgttaacatgcgtaggggcattttggacatttactttggaaatgagcg 35060946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 759352 - 759182
Alignment:
Q  4 tcacgttacacattacactagcgcatgttaacttacgctaagttattctacaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgtt 103  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  759352 tcacgttacacattacactagcgcatgttaacttacactaagttactctacaaataacactagcgcatgttaagtcacacaacatatcttaagttacgtt 759253  T
Q  104 gtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatcc 174  Q
    ||||||| || || |||||||||||||||||| |  ||||| | ||||||||||| ||||||| |||||||    
T  759252 gtaatttacactaacacatgttaacatgcgtatgagcatttcggtcatttactttgggaatgatcgaatcc 759182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 34016194 - 34016024
Alignment:
Q  4 tcacgttacacattacactagcgcatgttaacttacgctaagttattctacaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgtt 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||   || |||||||||||||||||||||    
T  34016194 tcacgttacacattacattagcgcatgttaacttacgctaagttattctacaaatatcactagcgcatgttaacctacgcaacgtatcttaagttacgtt 34016095  T
Q  104 gtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatcc 174  Q
    ||||||  || |||  |||||||||||| |||||| |||||   ||||||||||| |||||||||||||||    
T  34016094 gtaattcccactagtgcatgttaacatgtgtaggggcatttcagtcatttactttgggaatgagcgaatcc 34016024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 5506626 - 5506747
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    |||||| |||||||||||||||||||||| | || |||||||||||| ||| ||||||||| | || ||||| ||||||||||||  ||||| |||||||    
T  5506626 acaaatgacactagcgcatgttaagtcacgctacttatcttaagttatgttataatttgcactggcgcatgtcaacatgcgtaggagcatttcgatcatt 5506725  T
Q  153 tactttaggaatgagcgaatcc 174  Q
    |||||| |||||||| ||||||    
T  5506726 tactttgggaatgagtgaatcc 5506747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 6705989 - 6706096
Alignment:
Q  72 gttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaa 171  Q
    |||||||||| |||| ||| ||||| |||||||||||||||| |||| ||||||||||||||||||| |||||   ||||||||||| | ||||||||||    
T  6705989 gttaagtcacgcaacatatgttaagatacgttgtaatttgcactagcgcatgttaacatgcgtaggggcatttcagtcatttactttggaaatgagcgaa 6706088  T
Q  172 tccgtttg 179  Q
    ||| ||||    
T  6706089 tccatttg 6706096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 179
Target Start/End: Complemental strand, 28678029 - 28677903
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    |||||||||| || ||||||||||||||| | || ||| |||||||||||| |||||| || |||| ||||||||| | |||||||  |||| | |||||    
T  28678029 acaaataacagtatcgcatgttaagtcacgctacttattttaagttacgttataattttcagtagcgcatgttaacttacgtaggggtatttcggtcatt 28677930  T
Q  153 tactttaggaatgagcgaatccgtttg 179  Q
    |||||||||||||||||| ||| ||||    
T  28677929 tactttaggaatgagcgattccatttg 28677903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 30489866 - 30489753
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    ||||||||||||||||||||||||||||| | || ||| |||||||||||| |||| |||| |||  ||||||||||||||||||| ||||||   | ||    
T  30489866 acaaataacactagcgcatgttaagtcacgctacttattttaagttacgttataatctgcactagagcatgttaacatgcgtaggggcattttcgacttt 30489767  T
Q  153 tactttaggaatga 166  Q
    |||||| |||||||    
T  30489766 tactttgggaatga 30489753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 38740552 - 38740623
Alignment:
Q  4 tcacgttacacattacactagcgcatgttaacttacgctaagttattctacaaataacactagcgcatgttaa 76  Q
    |||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||    
T  38740552 tcacgttacacattacactagcgcatgttaacatatgctaagtt-ttctaaaaataacactagcgcatgttaa 38740623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 171
Target Start/End: Complemental strand, 11135879 - 11135766
Alignment:
Q  58 taacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatttactt 157  Q
    ||||||||||||||||||| |||| |||||| | |||| ||||||||| ||||||| ||||  | ||||||||||||||||  |||||| ||||||| ||    
T  11135879 taacactagcgcatgttaactcacgcaacgtgtgttaacttacgttgtcatttgcactagcgtaagttaacatgcgtaggggtattttggtcatttattt 11135780  T
Q  158 taggaatgagcgaa 171  Q
    | | ||||||||||    
T  11135779 tggaaatgagcgaa 11135766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 33144189 - 33144236
Alignment:
Q  123 gttaacatgcgtagggacattttgatcatttactttaggaatgagcga 170  Q
    |||||||||||||||| ||||| | |||||||||||||||||||||||    
T  33144189 gttaacatgcgtaggggcatttcggtcatttactttaggaatgagcga 33144236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 1145214 - 1145166
Alignment:
Q  123 gttaacatgcgtagggacattttgatcatttactttaggaatgagcgaa 171  Q
    |||||||||||||| | ||||||| ||||||||||| ||||||||||||    
T  1145214 gttaacatgcgtagaggcattttggtcatttactttgggaatgagcgaa 1145166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 33037386 - 33037437
Alignment:
Q  123 gttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatcc 174  Q
    ||||||||| |||||| ||||||| ||||||||||| |||||||| ||||||    
T  33037386 gttaacatgtgtaggggcattttggtcatttactttgggaatgagtgaatcc 33037437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 7164754 - 7164812
Alignment:
Q  123 gttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatccgtttgag 181  Q
    ||||| ||||||||||| ||||| |||||||| |||  |||||||||||||| ||||||    
T  7164754 gttaatatgcgtagggatattttaatcatttattttgagaatgagcgaatccatttgag 7164812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 17644606 - 17644656
Alignment:
Q  124 ttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatcc 174  Q
    |||||||||||||||  ||||||  |||||||||| |||||||||||||||    
T  17644606 ttaacatgcgtaggggtattttggacatttactttgggaatgagcgaatcc 17644656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 30491800 - 30491866
Alignment:
Q  123 gttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    |||||||||||||||||||||||   | |||||||| ||||||||||||| | |||| | |||||||    
T  30491800 gttaacatgcgtagggacattttcgacttttactttgggaatgagcgaattcatttgggtaatgagc 30491866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 19399568 - 19399519
Alignment:
Q  118 cacatgttaacatgcgtagggacattttgatcatttactttaggaatgag 167  Q
    |||||||||||||| ||| | ||||||||| | |||||||||||||||||    
T  19399568 cacatgttaacatgtgtatgtacattttgaacttttactttaggaatgag 19399519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 25759898 - 25759857
Alignment:
Q  138 gacattttgatcatttactttaggaatgagcgaatccgtttg 179  Q
    ||||||||| |||||||||||||||||||||  |||||||||    
T  25759898 gacattttggtcatttactttaggaatgagcagatccgtttg 25759857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 28704021 - 28703964
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaattt 110  Q
    ||||||||||||||||| ||||||||||  | || |||||||| ||||||| ||||||    
T  28704021 acaaataacactagcgcgtgttaagtcatgctacttatcttaatttacgttataattt 28703964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 30489925 - 30489884
Alignment:
Q  4 tcacgttacacattacactagcgcatgttaacttacgctaag 45  Q
    ||||||| |||| ||||||||||||||||||||| |||||||    
T  30489925 tcacgtttcacaatacactagcgcatgttaacttgcgctaag 30489884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 4845379 - 4845327
Alignment:
Q  118 cacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcga 170  Q
    |||||||||||||||| |||  ||||||   ||||||||||||||||||||||    
T  4845379 cacatgttaacatgcgcaggagcattttagacatttactttaggaatgagcga 4845327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 4 - 189
Target Start/End: Complemental strand, 8273437 - 8273252
Alignment:
Q  4 tcacgttacacattacactagcgcatgttaacttacgctaagttattctacaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgtt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||   || |||| ||||||||||||||||    
T  8273437 tcacgttacacattacactagcgcatgttaacttacgctaagttattctacaaatatcactagtgcatgttaacctactcaacatatcttaagttacgtt 8273338  T
Q  104 gtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    ||||||||||  | | ||||||||||||||||||| ||||| | ||||||||||| ||||||||||||||| |||| | |||||||    
T  8273337 gtaatttgcacaaacgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcgaatccatttgggtaatgagc 8273252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 22727899 - 22727781
Alignment:
Q  10 tacacattacactagcgcatgttaacttacgctaagttattctacaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatt 109  Q
    |||| |||||||||||||||||||||| |||| |  | || |||||||||||| |||| ||||||||  |||  ||||||| |||| | |||| | ||||    
T  22727899 tacaaattacactagcgcatgttaactcacgcaacctcatgctacaaataacaatagctcatgttaacccacgaaacgtatgttaactaacgtgggaatt 22727800  T
Q  110 tgcaatagcacatgttaac 128  Q
    |||| |||| |||||||||    
T  22727799 tgcactagcgcatgttaac 22727781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 22727947 - 22727865
Alignment:
Q  4 tcacgttacacattacactagcgcatgttaacttacgctaagttattctacaaataacactagcgcatgttaagtcacacaac 86  Q
    ||||| |||| |||||||||||||||||||||| |||| |  | || |||||||| ||||||||||||||||| |||| ||||    
T  22727947 tcacgctacaaattacactagcgcatgttaactcacgcaacctcatgctacaaattacactagcgcatgttaactcacgcaac 22727865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 2154338 - 2154288
Alignment:
Q  120 catgttaacatgcgtagggacattttgatcatttactttaggaatgagcga 170  Q
    ||||||||  |||||||||||||||||||| |||||||| |||||||||||    
T  2154338 catgttaagttgcgtagggacattttgatcttttactttgggaatgagcga 2154288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 12969266 - 12969314
Alignment:
Q  120 catgttaacatgcgtagggacattttgatcatttactttaggaatgagcg 169  Q
    ||||||||||||||||||| |||||||| | |||||||| ||||||||||    
T  12969266 catgttaacatgcgtaggggcattttgaacttttacttt-ggaatgagcg 12969314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 11713039 - 11712983
Alignment:
Q  115 tagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaa 171  Q
    |||| ||||||||||| ||||||| |||||||  | |||||||| ||||||||||||    
T  11713039 tagcgcatgttaacatacgtaggggcattttggacttttactttgggaatgagcgaa 11712983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 42119235 - 42119195
Alignment:
Q  118 cacatgttaacatgcgtagggacattttgatcatttacttt 158  Q
    ||||||||||||||||||||| |||||||  ||||||||||    
T  42119235 cacatgttaacatgcgtaggggcattttggacatttacttt 42119195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 6e-50; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 23283661 - 23283829
Alignment:
Q  4 tcacgttacacattacactagcgcatgttaacttacgctaagttattctacaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgtt 103  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||| ||||||||| | || ||||||||||||||||| |||    
T  23283661 tcacgttacacattacactagcgcatgttaacttacgttaagttattttacaaatatcactagtgcatgttaacttacgcaacgtatcttaagttatgtt 23283760  T
Q  104 gtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaat 172  Q
    |||||||||| |||||||||||||||||| || |  ||||| |||||||||||||   |||||||||||    
T  23283761 gtaatttgcactagcacatgttaacatgcataagagcatttcgatcatttactttgaaaatgagcgaat 23283829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 12586733 - 12586868
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    |||||||||||||| |||||||||||||| | || |||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| | |||||    
T  12586733 acaaataacactagtgcatgttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcgtagggacatttcggtcatt 12586832  T
Q  153 tactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    || ||| | ||||||||||||| |||||| |||||||    
T  12586833 ta-tttggaaatgagcgaatccatttgagtaatgagc 12586868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 53 - 179
Target Start/End: Original strand, 24974081 - 24974207
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    ||||||||||||||||||||||||||||| | || ||||||||||||| || ||||||||| |||| ||||||||||||||||||| ||||| | |||||    
T  24974081 acaaataacactagcgcatgttaagtcacgctacttatcttaagttacattataatttgcactagcgcatgttaacatgcgtaggggcatttcggtcatt 24974180  T
Q  153 tactttaggaatgagcgaatccgtttg 179  Q
    |||||| ||||||||| ||||| ||||    
T  24974181 tactttgggaatgagcaaatccatttg 24974207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 36501800 - 36501921
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    ||||||||||||||| |||||||||||||   || |||||| ||||||||| |||||||||  ||| ||||| ||||||||||||| ||||| |||||||    
T  36501800 acaaataacactagcacatgttaagtcacgttacttatcttgagttacgttataatttgcaccagcgcatgtcaacatgcgtaggggcatttcgatcatt 36501899  T
Q  153 tactttaggaatgagcgaatcc 174  Q
    |||||| |||||||||||||||    
T  36501900 tactttgggaatgagcgaatcc 36501921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 55527848 - 55527969
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    |||||||||||||| |||||||||||||| | || |||||||||||||||| ||||||||| |||| | ||||||||||||||||| ||||| | |||||    
T  55527848 acaaataacactagtgcatgttaagtcacgctacttatcttaagttacgttataatttgcactagcgcgtgttaacatgcgtaggggcatttcggtcatt 55527947  T
Q  153 tactttaggaatgagcgaatcc 174  Q
    | |||| | |||||||||||||    
T  55527948 tgctttggaaatgagcgaatcc 55527969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 45237554 - 45237418
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    |||||||||||||||||||||||    || ||||||||||||||||||||| ||||||||| |||| ||||||||||||| ||||| |||||   | |||    
T  45237554 acaaataacactagcgcatgttagcatacgcaacgtatcttaagttacgttataatttgcactagcgcatgttaacatgcataggggcatttcagttatt 45237455  T
Q  153 tactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    |||||||| ||| ||||||||| |||||| |||||||    
T  45237454 tactttagaaataagcgaatccatttgagtaatgagc 45237418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 45246978 - 45247029
Alignment:
Q  115 tagcacatgttaacatgcgtagggacattttgatcatttactttaggaatga 166  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||| |||||    
T  45246978 tagcgcatgttaacatacgtagggacattttgatcatttactttagaaatga 45247029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 46817434 - 46817484
Alignment:
Q  120 catgttaacatgcgtagggacattttgatcatttactttaggaatgagcga 170  Q
    ||||||||||||||||||| |||||||| ||||||||||| ||||||||||    
T  46817434 catgttaacatgcgtaggggcattttgaacatttactttaagaatgagcga 46817484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 47043986 - 47044060
Alignment:
Q  115 tagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    ||||||||||||||||||| |||| ||||||||  ||||||||||||||||| |||  | ||||||| |||||||    
T  47043986 tagcacatgttaacatgcgcaggggcattttgaatatttactttaggaatgaacgatacagtttgagtaatgagc 47044060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 34235706 - 34235755
Alignment:
Q  120 catgttaacatgcgtagggacattttgatcatttactttaggaatgagcg 169  Q
    |||||||||||||||| || ||||| | ||||||||||||||||||||||    
T  34235706 catgttaacatgcgtatgggcatttcggtcatttactttaggaatgagcg 34235755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 51719728 - 51719835
Alignment:
Q  72 gttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaa 171  Q
    |||||||||| |||| ||| ||| ||||||||||||||| || || | ||||||||| | |||||||  |||| | | ||||||||| | ||| ||||||    
T  51719728 gttaagtcacgcaacatatgttacgttacgttgtaatttacattaacgcatgttaacttacgtaggggtatttcggttatttactttggaaataagcgaa 51719827  T
Q  172 tccgtttg 179  Q
    ||| ||||    
T  51719828 tccatttg 51719835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 27992188 - 27992122
Alignment:
Q  123 gttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    |||||||||| ||||| ||||| | ||||||||||| ||||||||| ||||| |||||  |||||||    
T  27992188 gttaacatgcttaggggcatttcggtcatttactttgggaatgagcaaatccatttgaataatgagc 27992122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 33164507 - 33164556
Alignment:
Q  120 catgttaacatgcgtagggacattttgatcatttactttaggaatgagcg 169  Q
    ||||||||||||||||||| |||||||  ||||||||||  |||||||||    
T  33164507 catgttaacatgcgtaggggcattttggacatttactttgagaatgagcg 33164556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 53265873 - 53265808
Alignment:
Q  115 tagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatccgtttga 180  Q
    |||| ||||||||||||||||||  |||||||    ||||||||||||||||||||| || |||||    
T  53265873 tagcgcatgttaacatgcgtaggagcattttggaattttactttaggaatgagcgaaaccatttga 53265808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 55527789 - 55527830
Alignment:
Q  4 tcacgttacacattacactagcgcatgttaacttacgctaag 45  Q
    ||||||| |||| ||||||||||||||||||||| |||||||    
T  55527789 tcacgttgcacaatacactagcgcatgttaacttgcgctaag 55527830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 6e-47; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 39645964 - 39645796
Alignment:
Q  4 tcacgttacacattacactagcgcatgttaacttacgctaagttattctacaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgtt 103  Q
    |||||||||||| |||||||||||||||||||||||||||   |||||||||||||||||||| ||||||||| | || ||||||| |||||||||| ||    
T  39645964 tcacgttacacaatacactagcgcatgttaacttacgctag--tattctacaaataacactagtgcatgttaacttacgcaacgtagcttaagttacatt 39645867  T
Q  104 gtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatcc 174  Q
     ||||||||| |||| |||||||||||||||||| |||||| |||||||||||||  |||||| |||||||    
T  39645866 ataatttgcactagcgcatgttaacatgcgtaggaacatttcgatcatttactttgcgaatgaacgaatcc 39645796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 35069173 - 35069304
Alignment:
Q  4 tcacgttacacattacactagcgcatgttaacttacgctaagttattctacaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgtt 103  Q
    |||| ||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||   || |||||||||||||||||||||    
T  35069173 tcacattacacattacactaacgaatgttaacttacgctaagttattctacaaatatcactagcgcatgttaacctacgcaacgtatcttaagttacgtt 35069272  T
Q  104 gtaatttgcaatagcacatgttaacatgcgta 135  Q
    |||||||||| |||| ||||||||||| ||||    
T  35069273 gtaatttgcactagcgcatgttaacatacgta 35069304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 34082982 - 34082846
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    ||||||||||||||||||||||||||||| | || |||||||||||| ||| ||||||| |  ||| ||||||||||||||||||  |||||||||||||    
T  34082982 acaaataacactagcgcatgttaagtcacgctacttatcttaagttatgttataatttgtaccagcgcatgttaacatgcgtaggagcattttgatcatt 34082883  T
Q  153 tactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    |||||| | ||||||||||| | |||| |||||||||    
T  34082882 tactttggaaatgagcgaattcatttgggcaatgagc 34082846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 72 - 189
Target Start/End: Original strand, 53814515 - 53814632
Alignment:
Q  72 gttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaa 171  Q
    ||||||||||  ||||||| |||||||||||| ||||||||| |||| ||| ||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  53814515 gttaagtcacgtaacgtatgttaagttacgttttaatttgcactagcgcatattaacatgcgtaggggcattttgatcatttactttgggaatgagcgaa 53814614  T
Q  172 tccgtttgagcaatgagc 189  Q
    ||| |||| | |||||||    
T  53814615 tccatttgggtaatgagc 53814632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 7665869 - 7665740
Alignment:
Q  60 acactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatttacttta 159  Q
    |||||||||||||||||||||| | || |||||||||||||||| ||||||||| |||| ||||||||||||| || || ||||| | |||||||||||     
T  7665869 acactagcgcatgttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcataagggcatttcggtcatttactttg 7665770  T
Q  160 ggaatgagcgaatccgtttgagcaatgagc 189  Q
     |||||||||||||| |||| | |||||||    
T  7665769 cgaatgagcgaatccatttgggaaatgagc 7665740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 15040824 - 15040688
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    ||||||||||||||| ||||||||||||| | |  ||||||||| |||||| ||||||||| |||  ||||||||||||||||||| |||||   |||||    
T  15040824 acaaataacactagcacatgttaagtcacgctatttatcttaagctacgttataatttgcactagtgcatgttaacatgcgtaggggcatttcagtcatt 15040725  T
Q  153 tactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    |||||| ||||||||||||||| |||| | |||||||    
T  15040724 tactttgggaatgagcgaatccatttgggtaatgagc 15040688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 53 - 172
Target Start/End: Original strand, 19872076 - 19872195
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    ||||||||||||| | ||| ||||||||| | || |||||||||||||||| || |||||| || | ||||||||||||||||| | ||||||  |||||    
T  19872076 acaaataacactaacacattttaagtcacgctacttatcttaagttacgttatagtttgcactaacgcatgttaacatgcgtagaggcattttagtcatt 19872175  T
Q  153 tactttaggaatgagcgaat 172  Q
    || |||||||||||||||||    
T  19872176 tattttaggaatgagcgaat 19872195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 40517038 - 40516996
Alignment:
Q  132 cgtagggacattttgatcatttactttaggaatgagcgaatcc 174  Q
    ||||| ||||||||||||||||||||||||||||||| |||||    
T  40517038 cgtagagacattttgatcatttactttaggaatgagcaaatcc 40516996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 53827663 - 53827713
Alignment:
Q  120 catgttaacatgcgtagggacattttgatcatttactttaggaatgagcga 170  Q
    ||||||||||||||||||| |||||||  |||||||||| |||||||||||    
T  53827663 catgttaacatgcgtaggggcattttggacatttactttgggaatgagcga 53827713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 26998292 - 26998340
Alignment:
Q  123 gttaacatgcgtagggacattttgatcatttactttaggaatgagcgaa 171  Q
    ||||||||| ||||||| |||||||||||||| ||||| ||||||||||    
T  26998292 gttaacatgtgtagggatattttgatcatttattttagaaatgagcgaa 26998340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 50663948 - 50663900
Alignment:
Q  123 gttaacatgcgtagggacattttgatcatttactttaggaatgagcgaa 171  Q
    |||||||||||||||| ||||||| | ||||||||| ||||||||||||    
T  50663948 gttaacatgcgtaggggcattttggttatttactttgggaatgagcgaa 50663900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 2325558 - 2325608
Alignment:
Q  115 tagcacatgttaacatgcgtagggacattttgatcatttactttaggaatg 165  Q
    |||| |||||||||||||||||||||||||| | | |||||||| ||||||    
T  2325558 tagcgcatgttaacatgcgtagggacattttaaacttttactttgggaatg 2325608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 40517534 - 40517584
Alignment:
Q  129 atgcgtagggacattttgatcatttactttaggaatgagcgaatccgtttg 179  Q
    ||||||||||  || ||| |||||||||||||||||||||||| |||||||    
T  40517534 atgcgtaggggtatcttggtcatttactttaggaatgagcgaaaccgtttg 40517584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 4971183 - 4971232
Alignment:
Q  87 gtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtag 136  Q
    |||| ||||||||| |||||||||||| |||  |||||||||||||||||    
T  4971183 gtatgttaagttactttgtaatttgcactagtgcatgttaacatgcgtag 4971232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 6162684 - 6162733
Alignment:
Q  120 catgttaacatgcgtagggacattttgatcatttactttaggaatgagcg 169  Q
    ||||||||||||||||||| |||||||  | |||||||| ||||||||||    
T  6162684 catgttaacatgcgtaggggcattttggacttttactttgggaatgagcg 6162733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 19872017 - 19872058
Alignment:
Q  4 tcacgttacacattacactagcgcatgttaacttacgctaag 45  Q
    ||||||| |||| ||||||||||||||||||||| |||||||    
T  19872017 tcacgttgcacaatacactagcgcatgttaacttgcgctaag 19872058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 2652942 - 2652982
Alignment:
Q  124 ttaacatgcgtagggacattttgatcatttactttaggaat 164  Q
    |||||||||||||||  |||||||||||||||||| |||||    
T  2652942 ttaacatgcgtaggggtattttgatcatttactttgggaat 2652982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 9e-46; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 4 - 189
Target Start/End: Complemental strand, 28474984 - 28474799
Alignment:
Q  4 tcacgttacacattacactagcgcatgttaacttacgctaagttattctacaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgtt 103  Q
    |||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||| |||| ||||||| | |  |||||||||||||||||||||    
T  28474984 tcacattacacaatacactagcccatgttaacttacgctaagttattctacaaatatcaccagcgaatgttaacttatgcaacgtatcttaagttacgtt 28474885  T
Q  104 gtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    |||||||||| |||  ||||||||||||||||||| |||||   ||||||| ||| |||||||| |||||| |||| | |||||||    
T  28474884 gtaatttgcagtagtgcatgttaacatgcgtaggggcatttcagtcatttattttgggaatgagtgaatccatttgggtaatgagc 28474799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 189
Target Start/End: Complemental strand, 33401599 - 33401415
Alignment:
Q  4 tcacgttacacattacactagcgcatgttaacttacgctaagttattctacaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgtt 103  Q
    ||||||| |||| ||||||||| ||||||||||| |||||||  |||| ||||||||||||||||||||||||||||| | || ||||||||||||||||    
T  33401599 tcacgttgcacaatacactagcacatgttaacttgcgctaagc-attcaacaaataacactagcgcatgttaagtcacgctacttatcttaagttacgtt 33401501  T
Q  104 gtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
     ||||||||| |||| ||||||||||||| || || ||||| | |||||||||||  |||||||||||||| |||||  |||||||    
T  33401500 ataatttgcactagcgcatgttaacatgcataagggcatttcggtcatttactttgagaatgagcgaatccatttgactaatgagc 33401415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 33617787 - 33617651
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    ||||||||||||||||||||||||||||| | || |||||||||||||||| ||||||||| |||| ||||||||||||| ||||| ||||| | |||||    
T  33617787 acaaataacactagcgcatgttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcataggggcatttcggtcatt 33617688  T
Q  153 tactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    ||||||  |||||||||||||| |||| | |||||||    
T  33617687 tactttgagaatgagcgaatccatttgggtaatgagc 33617651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 72 - 189
Target Start/End: Original strand, 28446485 - 28446601
Alignment:
Q  72 gttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaa 171  Q
    |||||||||| |||||| | |||||||||||||||||| | | |||| ||||||||||||||||||| |||||   ||||||||||| ||||||||||||    
T  28446485 gttaagtcacgcaacgtgtgttaagttacgttgtaatt-gtactagcgcatgttaacatgcgtaggggcatttcagtcatttactttgggaatgagcgaa 28446583  T
Q  172 tccgtttgagcaatgagc 189  Q
    ||| |||| | |||||||    
T  28446584 tccatttgggtaatgagc 28446601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 48027031 - 48027152
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    ||||||||||||||||||| ||||||||| | || |||||||| ||||||| ||||||||| || | ||| ||||||||  ||| | ||||| | |||||    
T  48027031 acaaataacactagcgcattttaagtcacgctacttatcttaaattacgttataatttgcactaacgcatattaacatgtatagaggcatttcggtcatt 48027130  T
Q  153 tactttaggaatgagcgaatcc 174  Q
    || | ||| |||||||||||||    
T  48027131 tattatagaaatgagcgaatcc 48027152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 33617971 - 33617911
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgca 113  Q
    ||||||||||||||||||||||||||||| | || |||||||||||||||| |||||||||    
T  33617971 acaaataacactagcgcatgttaagtcacgctacttatcttaagttacgttataatttgca 33617911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 35563495 - 35563382
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    |||||||||||||| |||||||||||||| | || ||||||||||||| |        ||| |||| |||||||||||||| |||| |||||   |||||    
T  35563495 acaaataacactagtgcatgttaagtcacgctacttatcttaagttacat--------gcactagcgcatgttaacatgcgcaggggcatttcagtcatt 35563404  T
Q  153 tactttaggaatgagcgaatcc 174  Q
    |||||| |||||||||||||||    
T  35563403 tactttgggaatgagcgaatcc 35563382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 39650277 - 39650221
Alignment:
Q  115 tagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaa 171  Q
    |||| ||||||||||||||||||| |||||||  |||||||||||||||||||||||    
T  39650277 tagcgcatgttaacatgcgtaggggcattttggacatttactttaggaatgagcgaa 39650221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 35563640 - 35563532
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    |||||||||||||| |||||||||||||| | || ||||||||||||| |        ||| |||| ||||||||||||||||||| |||||   |||||    
T  35563640 acaaataacactagtgcatgttaagtcacgctacttatcttaagttacat--------gcactagcgcatgttaacatgcgtaggggcatttcagtcatt 35563549  T
Q  153 tactttaggaatgagcg 169  Q
    |||||| ||||||||||    
T  35563548 tactttgggaatgagcg 35563532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 45691045 - 45691119
Alignment:
Q  115 tagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    |||| |||||||||||| |||||| |||||||  | |||||||| |||||||||||| || |||||| |||||||    
T  45691045 tagctcatgttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaatgagc 45691119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 45688384 - 45688336
Alignment:
Q  120 catgttaacatgcgtagggacattttgatcatttactttaggaatgagc 168  Q
    ||||||||||||||||||| |||||||| | |||||||| |||||||||    
T  45688384 catgttaacatgcgtaggggcattttgaacttttactttgggaatgagc 45688336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 28475978 - 28476033
Alignment:
Q  114 atagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcg 169  Q
    ||||| |||||||||||| |||||| ||||| |||||||||||||  |||||||||    
T  28475978 atagcgcatgttaacatgtgtaggggcatttcgatcatttactttgagaatgagcg 28476033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 45691196 - 45691261
Alignment:
Q  124 ttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    |||||||| |||||| |||||||  | |||||||| |||||||||||| || |||||| |||||||    
T  45691196 ttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaatgagc 45691261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 45691338 - 45691403
Alignment:
Q  124 ttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    |||||||| |||||| |||||||  | |||||||| |||||||||||| || |||||| |||||||    
T  45691338 ttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaatgagc 45691403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 50069237 - 50069286
Alignment:
Q  121 atgttaacatgcgtagggacattttgatcatttactttaggaatgagcga 170  Q
    ||||||||||||| |||| |||||||  |||||||||| |||||||||||    
T  50069237 atgttaacatgcgcaggggcattttggacatttactttgggaatgagcga 50069286  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 3691393 - 3691357
Alignment:
Q  359 aaattagtcaccgactctattaatattttaaattaat 395  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  3691393 aaattagtcatcgactctattaatgttttaaattaat 3691357  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 35563698 - 35563658
Alignment:
Q  5 cacgttacacattacactagcgcatgttaacttacgctaag 45  Q
    |||||| |||| ||||||||||||||||||||| |||||||    
T  35563698 cacgttgcacaatacactagcgcatgttaacttgcgctaag 35563658  T

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Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 5967172 - 5967308
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||||| |||||||    
T  5967172 acaaataacactagcgcatgttaagtcacactacttatcttaagttacgttataatttgcactagcgcatgttaacatgcgtaggggcatttcgatcatt 5967271  T
Q  153 tactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    |||||| ||||||||||||||| |||| | |||||||    
T  5967272 tactttgggaatgagcgaatccatttgggtaatgagc 5967308  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 34279496 - 34279632
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    ||||||||||||||||||||||||||||| | || |||||||||||||||| ||||||||| || | |||||||||||| |||||| ||||| |||||||    
T  34279496 acaaataacactagcgcatgttaagtcacgctacttatcttaagttacgttataatttgcactaacgcatgttaacatgtgtaggggcatttcgatcatt 34279595  T
Q  153 tactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    |||||||||||||||||||||| ||| || |||||||    
T  34279596 tactttaggaatgagcgaatccatttaagtaatgagc 34279632  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 189
Target Start/End: Complemental strand, 31762380 - 31762248
Alignment:
Q  57 ataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatttact 156  Q
    |||||||||||||||||||| | || ||||||||||| | ||||||  ||||||||| |||  ||||||||||||| |||||| |||| | | |||||||    
T  31762380 ataacactagcgcatgttaacttacgcaacgtatctttaattacgtaataatttgcactagtgcatgttaacatgcatagggatatttcgtttatttact 31762281  T
Q  157 ttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    || ||||||||||||||| |||||  |||||||    
T  31762280 ttgggaatgagcgaatccatttgaataatgagc 31762248  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 33220789 - 33220858
Alignment:
Q  120 catgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    ||||||||||||||||||| |||||||| | |||||||| |||||||| ||| || |||| | |||||||    
T  33220789 catgttaacatgcgtaggggcattttgaacttttactttgggaatgagtgaaaccatttgggtaatgagc 33220858  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 43640973 - 43641044
Alignment:
Q  118 cacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    |||| |||||||||||||||| || |||||||||||||||| | ||||||| || || |||| | |||||||    
T  43640973 cacaagttaacatgcgtaggggcaatttgatcatttactttggaaatgagccaaaccatttgggtaatgagc 43641044  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 34279437 - 34279478
Alignment:
Q  4 tcacgttacacattacactagcgcatgttaacttacgctaag 45  Q
    ||||||| |||| ||||||||||||||||||||| |||||||    
T  34279437 tcacgttgcacaatacactagcgcatgttaacttgcgctaag 34279478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 391
Target Start/End: Original strand, 10028763 - 10028795
Alignment:
Q  359 aaattagtcaccgactctattaatattttaaat 391  Q
    |||||||||||||||||||||||||||| ||||    
T  10028763 aaattagtcaccgactctattaatatttcaaat 10028795  T

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Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 5107 - 5243
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    |||||||||||||||| |||||||||||| |  | |||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||||| | |||||    
T  5107 acaaataacactagcgtatgttaagtcacgctgcttatcttaagttacgttataatttgcactagcgcatgttaacatgcgtaggggcatttcggtcatt 5206  T
Q  153 tactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    |||||| ||||||||||||||| |||| | |||||||    
T  5207 tactttgggaatgagcgaatccatttgggtaatgagc 5243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 52 - 179
Target Start/End: Complemental strand, 38386318 - 38386191
Alignment:
Q  52 tacaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcat 151  Q
    |||||||||||||||||||||| ||||||| | || |||||||||||||||| ||||||||| |||| ||||||||||||||||||| |||||  |||||    
T  38386318 tacaaataacactagcgcatgtaaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcgtaggggcatttcaatcat 38386219  T
Q  152 ttactttaggaatgagcgaatccgtttg 179  Q
    ||||||| | ||||||||||||| ||||    
T  38386218 ttactttggaaatgagcgaatccatttg 38386191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 38047789 - 38047669
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    ||||||||||||||||||||||||||||| | || |||||||||||||||| ||||||| | |||| ||||||||||||||||| |||||||||||||||    
T  38047789 acaaataacactagcgcatgttaagtcacgctacttatcttaagttacgttataatttgtactagcgcatgttaacatgcgtagagacattttgatcatt 38047690  T
Q  153 tactttaggaatgagcgaatc 173  Q
    || ||||  ||| ||||||||    
T  38047689 tattttaaaaataagcgaatc 38047669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 189
Target Start/End: Original strand, 5061702 - 5061799
Alignment:
Q  92 ttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    |||||||||||||||||||||| |||||||||||||||||||||  ||||||| | ||||||| ||| | |||||| |||||| |||| | |||||||    
T  5061702 ttaagttacgttgtaatttgcattagcacatgttaacatgcgtaacgacatttcgttcatttattttggaaatgagtgaatccatttgggtaatgagc 5061799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 19365330 - 19365451
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgtagggacattttgatcatt 152  Q
    |||| ||||||||| ||||||||| | || |||| |||||||| ||||||| ||||||||| |||| |||||||| ||||||||||  |||| | |||||    
T  19365330 acaattaacactagtgcatgttaacttacgcaacatatcttaaattacgttctaatttgcactagcgcatgttaaaatgcgtaggggtatttcggtcatt 19365429  T
Q  153 tactttaggaatgagcgaatcc 174  Q
    |  ||| |||||||||||||||    
T  19365430 ttatttgggaatgagcgaatcc 19365451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 48211858 - 48211806
Alignment:
Q  118 cacatgttaacatgcgtagggacattttgatcatttactttaggaatgagcga 170  Q
    |||||||||||||||| | ||||||||| |  |||||||||||||||||||||    
T  48211858 cacatgttaacatgcgcatggacattttaaaaatttactttaggaatgagcga 48211806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 8378045 - 8378127
Alignment:
Q  53 acaaataacactagcgcatgttaagtcacacaacgtatcttaagttacgttgtaatttgcaatagcacatgttaacatgcgta 135  Q
    |||||||| ||||||||||||||| | || |||  ||||| |||||||||| |||||| || ||   ||||||||||||||||    
T  8378045 acaaataatactagcgcatgttaacttacgcaaattatctgaagttacgttataatttacactaatgcatgttaacatgcgta 8378127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 26009442 - 26009397
Alignment:
Q  123 gttaacatgcgtagggacattttgatcatttactttaggaatgagc 168  Q
    ||||||||||||||| | |||||| ||||||||||| |||||||||    
T  26009442 gttaacatgcgtaggaatattttggtcatttactttgggaatgagc 26009397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 38047848 - 38047808
Alignment:
Q  4 tcacgttacacattacactagcgcatgttaacttacgctaa 44  Q
    ||||||| |||| ||||||||||||||||||||| ||||||    
T  38047848 tcacgtttcacaatacactagcgcatgttaacttgcgctaa 38047808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0700 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0700
Description:

Target: scaffold0700; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 4959 - 5005
Alignment:
Q  58 taacactagcgcatgttaagtcacacaacgtatcttaagttacgttg 104  Q
    |||||||||||||||||||||||| |||||| | |||| ||||||||    
T  4959 taacactagcgcatgttaagtcacgcaacgtgtgttaacttacgttg 5005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 24370 - 24436
Alignment:
Q  123 gttaacatgcgtagggacattttgatcatttactttaggaatgagcgaatccgtttgagcaatgagc 189  Q
    |||||||||||||||| |||||| | | |||||||| |||||||||||  | ||||||| |||||||    
T  24370 gttaacatgcgtaggggcattttaaacttttactttgggaatgagcgatactgtttgagtaatgagc 24436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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