View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9941_low_3 (Length: 356)
Name: NF9941_low_3
Description: NF9941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9941_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 39992858 - 39993185
Alignment:
| Q |
18 |
catcacagtgttcttcctcctgttccatactcatggtaagcaagtagtaaatcttataattaaggtcaaatcatatattacttactattatatgtgtgta |
117 |
Q |
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| T |
39992858 |
catcacagtgttcttcctcctgttccatactcatggtaagcaagtagtacatcttataattaaggtcaaatcatatattacttactattatatgtgtgtg |
39992957 |
T |
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| Q |
118 |
tatacttacaatttcatattttcatgcaccattatgtatgtatggacagggtggcactcttatctatggctaccatttcttcctttgattgtaagtacat |
217 |
Q |
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| T |
39992958 |
tatacttacaatttcatattttcatgcaccat----tatgtatggacagggtggcactcttatctatggctaccatttcttcctttgattgtaagtacat |
39993053 |
T |
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| Q |
218 |
gcaatgttatagcttaaattaatt-actaccgtatcaaataaggattgatatttttgtgtaaata-------taatgtcccaaattaaatgtagattgtc |
309 |
Q |
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| T |
39993054 |
gcaatgccatggtttaaattaattgattatcaaattatacagggatcgatatttttgtgtaaataaattaactaatgtcccaaattaaatgcagattgtc |
39993153 |
T |
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| Q |
310 |
ctattagttggaacaaagctgcaagtgatcat |
341 |
Q |
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| T |
39993154 |
ctattagttggaacaaagctgcaagtgatcat |
39993185 |
T |
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