View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9941_low_6 (Length: 299)
Name: NF9941_low_6
Description: NF9941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9941_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 30840441 - 30840714
Alignment:
| Q |
18 |
ctcatgagctagaacctttagctgagagcaccatgtcactactaagcttttctttgactccttttcaaaatcttttgggagcttagtctcttcagacgct |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
30840441 |
ctcatgagctagaacctttagctgagagcaccatgtcactactaagcttttctttgactccttttcaaaatcttttgggagcttattctcttcagaagct |
30840540 |
T |
|
| Q |
118 |
ctaacaacccataagaagtaacttccactatctcttaaaccataagctaattcttgtatttgctcctcatcaagacttaccatacttccaaaagaaacat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30840541 |
ctaacaacccataagaagtaacttccactatctcttaaaccataagctaattcttgtatttgctcctcatcaagacttaccatacttccaaaagaaacat |
30840640 |
T |
|
| Q |
218 |
aaacaactgatccttttggcttatcatttagccattccatgcatttttcattatacttgaattgtgcaacacca |
291 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30840641 |
aaacaactgatccttttggcttatcgtttagccattccatgcatttttcattatacttgaattgtgcaacacca |
30840714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 30844950 - 30845217
Alignment:
| Q |
18 |
ctcatgagctagaacctttagctgagagcaccatgtcactactaagcttttctttgactccttttcaaaatcttttgggagcttagtctcttcagacgct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30844950 |
ctcatgagctagaacctttagctgagagcaccatgtcactactaagcttttctttgactccttttcaaaatcttttgggagcttagtctcttcagaagct |
30845049 |
T |
|
| Q |
118 |
ctaacaacccataagaagtaacttccactatctcttaaaccataagctaattcttgtatttgctcctcatcaagacttaccatacttccaaaagaaacat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30845050 |
ctaacaacccataagaagtaacttccactatctcttaaaccataagctaattcttgtatttgctcctcatcaagacttaccatacttccaaaagaaacat |
30845149 |
T |
|
| Q |
218 |
aaacaactgatccttttggcttatcatttagccattccatgcatttttcattatacttgaattgtgca |
285 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
30845150 |
aaacaactgatccttttggcttatcatttaaccattccatgcatttttcattagtcttgaattgtgca |
30845217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 30817238 - 30817473
Alignment:
| Q |
19 |
tcatgagctagaacctttagctgagagcaccatgtcactactaagcttttctttgactccttttcaaaatcttttgggagcttagtctcttcagacgctc |
118 |
Q |
| |
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|||||||||||||||| || ||| | |||||||| ||| ||||||| |||| ||| | ||||||||| |||||||||||||||||||||||||| | | |
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| T |
30817238 |
tcatgagctagaacctctaactgggggcaccatgccacaactaagccattctctgatttcttttcaaagtcttttgggagcttagtctcttcagatgttt |
30817337 |
T |
|
| Q |
119 |
taacaacccataagaagtaacttccactatctcttaaaccataagctaattcttgtatttgctcctcatcaagacttaccatacttccaaaagaaacata |
218 |
Q |
| |
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| || |||||||||||||||||||||| |||| | |||| || |||| ||| | |||||| ||||||| || | ||||||| ||||| |||||||| |
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| T |
30817338 |
tcactacccataagaagtaacttccacaatctttcaaacaatgtgctacttcctctatttgttcctcattgagtgatgccatactcccaaatgaaacata |
30817437 |
T |
|
| Q |
219 |
aacaactgatccttttggcttatcatttagccattc |
254 |
Q |
| |
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|||| | || | ||||||||||| |||||||||||| |
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| T |
30817438 |
aacagcagacctttttggcttattatttagccattc |
30817473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 262
Target Start/End: Original strand, 30853487 - 30853670
Alignment:
| Q |
79 |
ttttcaaaatcttttgggagcttagtctcttcagacgctctaacaacccataagaagtaacttccactatctcttaaaccataagctaattcttgtattt |
178 |
Q |
| |
|
||||||||||||||| |||| || | |||||| || | | ||||||||||||||||||||||| ||| |||| ||||| || |||||| ||| | || || |
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| T |
30853487 |
ttttcaaaatcttttcggagtttcggctcttcggatggtttaacaacccataagaagtaactttcacaatctgttaaagcacaagctacttcctctaatt |
30853586 |
T |
|
| Q |
179 |
gctcctcatcaagacttaccatacttccaaaagaaacataaacaactgatccttttggcttatcatttagccattccatgcatt |
262 |
Q |
| |
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| || |||| || | ||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30853587 |
gttcttcattgagtgatgccaaactaccaaaagaagcataaacaactgatccttttggcttatcatttagccattccatacatt |
30853670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 79 - 251
Target Start/End: Original strand, 30858762 - 30858934
Alignment:
| Q |
79 |
ttttcaaaatcttttgggagcttagtctcttcagacgctctaacaacccataagaagtaacttccactatctcttaaaccataagctaattcttgtattt |
178 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| | ||| || | |||||| ||||||||||||| |||| | |||| ||| |||| ||| | ||||| |
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| T |
30858762 |
ttttcaaagtcttttggaagcttagtctcttcagaggttctcactatccataaaaagtaacttccacaatctttcaaacaatacgctacttcctttattt |
30858861 |
T |
|
| Q |
179 |
gctcctcatcaagacttaccatacttccaaaagaaacataaacaactgatccttttggcttatcatttagcca |
251 |
Q |
| |
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| ||||| | | ||| ||||||| ||||| |||||||||||||| || | ||||||||||| ||||||||| |
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| T |
30858862 |
gttcctctttgactcttgccatactcccaaatgaaacataaacaacagacctttttggcttattatttagcca |
30858934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 116 - 253
Target Start/End: Original strand, 13670374 - 13670511
Alignment:
| Q |
116 |
ctctaacaacccataagaagtaacttccactatctcttaaaccataagctaattcttgtatttgctcctcatcaagacttaccatacttccaaaagaaac |
215 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||| |||| || |||||| ||||||| ||||||| ||| ||||| |||| || ||||| || || |
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| T |
13670374 |
ctctaacaacccataagaaataactttcactatcttttaatcctaaagctagttcttgtgtttgctcttcactaagaccagccatgctaccaaatgagac |
13670473 |
T |
|
| Q |
216 |
ataaacaactgatccttttggcttatcatttagccatt |
253 |
Q |
| |
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||| |||||||| ||||||||||| ||||||||||||| |
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| T |
13670474 |
atacacaactgaaccttttggcttctcatttagccatt |
13670511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 253
Target Start/End: Complemental strand, 13688239 - 13688102
Alignment:
| Q |
116 |
ctctaacaacccataagaagtaacttccactatctcttaaaccataagctaattcttgtatttgctcctcatcaagacttaccatacttccaaaagaaac |
215 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||| |||| || |||||| ||||||| ||||||| ||| ||||| |||| || ||||| ||| | |
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| T |
13688239 |
ctctaacaacccataagaaataactttcactatcttttaatcctaaagctagttcttgtgtttgctcttcactaagaccggccatgctaccaaatgaagc |
13688140 |
T |
|
| Q |
216 |
ataaacaactgatccttttggcttatcatttagccatt |
253 |
Q |
| |
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||| |||||||| ||||| ||||||||||| ||||||| |
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| T |
13688139 |
atacacaactgaacctttaggcttatcattcagccatt |
13688102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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