View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9941_low_9 (Length: 246)
Name: NF9941_low_9
Description: NF9941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9941_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 67 - 238
Target Start/End: Complemental strand, 9605436 - 9605265
Alignment:
| Q |
67 |
tgagagagtgagtggtagatttagttagtaggggccataccagtggctcatgagttgatggtagcatgaatcatttacaattacatgagccttggccaat |
166 |
Q |
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| T |
9605436 |
tgagagagtgagtggtagatttagttagtaggggccataccagtggctcatgagttgatggtagcatgaatcatttacaattacatgagccttggccaat |
9605337 |
T |
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| Q |
167 |
agccaaattgtactgtcaacaccttggtctgcaggcaagatgactttgctttcagcaccatacttaacacca |
238 |
Q |
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| T |
9605336 |
agccaaattgtactgtcaacaccttggtctgcaggcaagatgactttgctttcagcaccatacttaacacca |
9605265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 9590242 - 9590154
Alignment:
| Q |
101 |
ccataccagtggctcatgagttga----tggtagcatgaatcatttacaattacatgagccttggccaatagccaaattgtactgtcaa |
185 |
Q |
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| T |
9590242 |
ccataccagtggcttatgagttgaagcatggtagcatgaatcatttacaattacacgagccttggccaatagccaaattgtactttcaa |
9590154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 102 - 228
Target Start/End: Original strand, 6450747 - 6450873
Alignment:
| Q |
102 |
cataccagtggctcatgagttgatggtagcatgaatcatttacaattacatgagccttggccaatagccaaattgtactgtcaacaccttggtctgcagg |
201 |
Q |
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| T |
6450747 |
cataccaatggctcatgagttgatgatagcatgagtcatttacaattacatgagcctttgccaacatccaaattgtactttcaacaccttcatgtgcagg |
6450846 |
T |
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| Q |
202 |
caagatgactttgctttcagcaccata |
228 |
Q |
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| T |
6450847 |
caagaatactttgctttcagcaccata |
6450873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 102 - 228
Target Start/End: Original strand, 6456932 - 6457058
Alignment:
| Q |
102 |
cataccagtggctcatgagttgatggtagcatgaatcatttacaattacatgagccttggccaatagccaaattgtactgtcaacaccttggtctgcagg |
201 |
Q |
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||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |||| ||| ||||| |
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| T |
6456932 |
cataccaatggctgatgagttgatgatagcatgaatcatttacaatgacatgagcctttgccaatagccaaattgtactttcaacgccttcgtcagcagg |
6457031 |
T |
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| Q |
202 |
caagatgactttgctttcagcaccata |
228 |
Q |
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| T |
6457032 |
caagaatactttgctttcagaaccata |
6457058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 36745361 - 36745289
Alignment:
| Q |
105 |
accagtggctcatgagttgatggtagcatgaatcatttacaattacatgagccttggccaatagccaaattgt |
177 |
Q |
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| T |
36745361 |
accagtgactcatgagttggtgaaagcaggcgtcatttacaactacatacgccttggccaattgccaaattgt |
36745289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 42688869 - 42688761
Alignment:
| Q |
104 |
taccagtggctcatgagttgatggtagcatgaatcatttacaattacatgagccttggccaatagccaaattgtactgtcaacaccttggtctgcaggca |
203 |
Q |
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| T |
42688869 |
taccaatgactcatgagttgatgatagcaagaatcattaaccaccacataagcttttgctagtagccaaatagtactttcaacaccttcatttgcaggta |
42688770 |
T |
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| Q |
204 |
agatgactt |
212 |
Q |
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| T |
42688769 |
aaatgactt |
42688761 |
T |
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