View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9942_1 (Length: 414)

Name: NF9942_1
Description: NF9942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9942_1
NF9942_1
[»] chr2 (31 HSPs)
chr2 (1-159)||(3602472-3602630)
chr2 (150-243)||(3602358-3602451)
chr2 (238-309)||(3602255-3602326)
chr2 (354-414)||(3607139-3607199)
chr2 (18-129)||(43858255-43858366)
chr2 (49-159)||(25747894-25748004)
chr2 (48-159)||(2213490-2213602)
chr2 (48-159)||(28127299-28127411)
chr2 (51-144)||(3680761-3680854)
chr2 (20-159)||(16467042-16467182)
chr2 (49-159)||(3853885-3853996)
chr2 (18-159)||(18511056-18511198)
chr2 (20-100)||(43436353-43436433)
chr2 (66-159)||(34433318-34433413)
chr2 (48-159)||(7472686-7472797)
chr2 (20-159)||(8041236-8041374)
chr2 (48-159)||(8170297-8170408)
chr2 (48-159)||(5916254-5916365)
chr2 (48-128)||(9988545-9988625)
chr2 (48-159)||(36312261-36312372)
chr2 (48-159)||(39141482-39141593)
chr2 (26-78)||(42516069-42516121)
chr2 (25-128)||(27911367-27911470)
chr2 (48-122)||(32501970-32502044)
chr2 (149-186)||(12110989-12111026)
chr2 (51-100)||(44619133-44619182)
chr2 (149-185)||(14531934-14531970)
chr2 (48-100)||(23358242-23358294)
chr2 (109-184)||(23377549-23377625)
chr2 (48-100)||(28641626-28641678)
chr2 (23-75)||(34907406-34907457)
[»] scaffold0041 (1 HSPs)
scaffold0041 (4-159)||(46694-46849)
[»] chr7 (27 HSPs)
chr7 (4-159)||(40903169-40903324)
chr7 (20-160)||(1766393-1766534)
chr7 (18-159)||(39634166-39634308)
chr7 (20-121)||(46285380-46285481)
chr7 (20-159)||(32186908-32187048)
chr7 (20-159)||(41715625-41715765)
chr7 (26-159)||(48459684-48459818)
chr7 (22-145)||(2839261-2839384)
chr7 (23-99)||(43581606-43581682)
chr7 (22-159)||(24770912-24771050)
chr7 (48-100)||(34366042-34366094)
chr7 (48-159)||(44967400-44967512)
chr7 (48-100)||(48134576-48134628)
chr7 (18-159)||(42752192-42752334)
chr7 (43-128)||(386514-386598)
chr7 (48-128)||(3342786-3342866)
chr7 (61-160)||(33746398-33746498)
chr7 (48-128)||(37562566-37562646)
chr7 (48-159)||(39391138-39391250)
chr7 (48-100)||(47217602-47217654)
chr7 (50-159)||(3750684-3750794)
chr7 (20-78)||(39977520-39977578)
chr7 (26-159)||(42740366-42740500)
chr7 (48-159)||(3622461-3622573)
chr7 (48-100)||(9456101-9456153)
chr7 (48-100)||(43738000-43738052)
chr7 (48-159)||(47021915-47022027)
[»] chr3 (22 HSPs)
chr3 (4-159)||(45423783-45423938)
chr3 (20-121)||(37698442-37698543)
chr3 (48-159)||(10853281-10853393)
chr3 (51-159)||(14651116-14651224)
chr3 (48-159)||(26519639-26519751)
chr3 (48-159)||(8424744-8424855)
chr3 (48-128)||(38172353-38172433)
chr3 (48-159)||(48189456-48189567)
chr3 (19-116)||(41459019-41459115)
chr3 (48-146)||(20813121-20813220)
chr3 (64-161)||(31766187-31766285)
chr3 (48-159)||(10334113-10334225)
chr3 (48-100)||(15511449-15511501)
chr3 (48-159)||(30811546-30811657)
chr3 (48-159)||(35425309-35425420)
chr3 (48-159)||(38340781-38340892)
chr3 (48-159)||(53074878-53074989)
chr3 (50-100)||(30810019-30810069)
chr3 (70-127)||(32861828-32861885)
chr3 (149-186)||(52813322-52813359)
chr3 (48-128)||(16246140-16246220)
chr3 (24-100)||(42475660-42475736)
[»] chr1 (32 HSPs)
chr1 (18-159)||(15884195-15884338)
chr1 (20-159)||(23628721-23628860)
chr1 (48-159)||(25061225-25061337)
chr1 (48-159)||(31223373-31223485)
chr1 (26-159)||(25229984-25230117)
chr1 (20-100)||(26058212-26058292)
chr1 (48-159)||(10470589-10470700)
chr1 (18-99)||(41898-41979)
chr1 (149-186)||(5167393-5167430)
chr1 (48-159)||(43728893-43729004)
chr1 (48-159)||(4369818-4369929)
chr1 (346-413)||(30804605-30804672)
chr1 (49-145)||(32365079-32365176)
chr1 (48-159)||(1199826-1199938)
chr1 (48-100)||(7826429-7826481)
chr1 (48-100)||(13055997-13056049)
chr1 (48-159)||(12247419-12247530)
chr1 (24-99)||(34718427-34718501)
chr1 (50-157)||(46581202-46581309)
chr1 (43-146)||(48002396-48002499)
chr1 (48-122)||(11023382-11023456)
chr1 (148-186)||(25061356-25061394)
chr1 (48-97)||(6464607-6464656)
chr1 (49-78)||(9447533-9447562)
chr1 (25-121)||(13855691-13855787)
chr1 (48-97)||(45710048-45710097)
chr1 (48-100)||(5410639-5410691)
chr1 (48-159)||(6166109-6166220)
chr1 (48-100)||(12468212-12468263)
chr1 (149-181)||(15477392-15477424)
chr1 (48-100)||(35536071-35536123)
chr1 (80-128)||(49178206-49178254)
[»] chr5 (16 HSPs)
chr5 (20-159)||(7178739-7178878)
chr5 (48-159)||(3667843-3667955)
chr5 (48-159)||(2430308-2430419)
chr5 (48-159)||(35760178-35760290)
chr5 (20-121)||(3747640-3747741)
chr5 (20-159)||(2694771-2694911)
chr5 (48-159)||(41834881-41834993)
chr5 (48-158)||(10058063-10058174)
chr5 (50-159)||(33953913-33954022)
chr5 (48-159)||(13253094-13253205)
chr5 (48-159)||(9275495-9275607)
chr5 (48-78)||(7714929-7714959)
chr5 (50-100)||(32454528-32454578)
chr5 (149-186)||(3747545-3747582)
chr5 (18-99)||(4569153-4569234)
chr5 (48-100)||(41740664-41740716)
[»] chr8 (30 HSPs)
chr8 (51-159)||(2071582-2071690)
chr8 (21-145)||(3619097-3619221)
chr8 (18-128)||(22552786-22552896)
chr8 (18-159)||(31246329-31246471)
chr8 (48-159)||(3467516-3467628)
chr8 (48-159)||(3097220-3097332)
chr8 (18-161)||(15206649-15206793)
chr8 (25-121)||(24297644-24297740)
chr8 (60-146)||(14382188-14382274)
chr8 (30-128)||(37458344-37458447)
chr8 (346-388)||(37117297-37117339)
chr8 (64-161)||(8702420-8702517)
chr8 (51-164)||(24897597-24897710)
chr8 (19-128)||(33627080-33627189)
chr8 (48-159)||(25697974-25698085)
chr8 (31-161)||(1373005-1373136)
chr8 (48-162)||(43550874-43550989)
chr8 (22-128)||(41289104-41289210)
chr8 (48-159)||(4941795-4941907)
chr8 (48-100)||(27649729-27649781)
chr8 (51-159)||(40792218-40792326)
chr8 (57-159)||(22936807-22936910)
chr8 (132-181)||(9695372-9695421)
chr8 (89-184)||(19649209-19649306)
chr8 (149-186)||(24297549-24297586)
chr8 (20-159)||(26490888-26491028)
chr8 (149-185)||(8130062-8130098)
chr8 (48-100)||(29023222-29023274)
chr8 (48-100)||(41981140-41981192)
chr8 (48-159)||(42148988-42149100)
[»] chr6 (10 HSPs)
chr6 (51-159)||(5584063-5584171)
chr6 (22-159)||(21254893-21255030)
chr6 (50-159)||(10826068-10826178)
chr6 (18-161)||(1312451-1312595)
chr6 (50-159)||(6208077-6208186)
chr6 (50-100)||(13739183-13739233)
chr6 (50-100)||(13744683-13744733)
chr6 (19-75)||(3050645-3050700)
chr6 (48-100)||(31132439-31132491)
chr6 (48-159)||(33899019-33899131)
[»] chr4 (36 HSPs)
chr4 (48-159)||(29149321-29149433)
chr4 (48-186)||(2175134-2175273)
chr4 (18-128)||(38305941-38306051)
chr4 (26-159)||(51922878-51923012)
chr4 (48-159)||(14072463-14072574)
chr4 (50-159)||(28752477-28752586)
chr4 (48-159)||(19592245-19592357)
chr4 (20-159)||(48550149-48550289)
chr4 (48-159)||(48550441-48550553)
chr4 (22-159)||(19599510-19599646)
chr4 (18-159)||(54488535-54488677)
chr4 (20-128)||(14054783-14054891)
chr4 (58-121)||(3652647-3652710)
chr4 (64-161)||(38740314-38740411)
chr4 (26-159)||(42944912-42945046)
chr4 (149-186)||(3652753-3652790)
chr4 (48-97)||(28986981-28987030)
chr4 (20-97)||(41866087-41866164)
chr4 (48-159)||(6138634-6138746)
chr4 (48-128)||(14564192-14564272)
chr4 (48-159)||(39636745-39636857)
chr4 (20-66)||(3652224-3652270)
chr4 (48-78)||(9889430-9889460)
chr4 (48-98)||(9893671-9893721)
chr4 (26-159)||(26651862-26651996)
chr4 (50-100)||(43781592-43781642)
chr4 (23-121)||(53531912-53532010)
chr4 (109-155)||(53914920-53914966)
chr4 (18-75)||(6255119-6255175)
chr4 (48-101)||(48257063-48257116)
chr4 (149-186)||(54683480-54683517)
chr4 (20-156)||(20191703-20191839)
chr4 (24-100)||(25312651-25312727)
chr4 (48-128)||(30887199-30887279)
chr4 (48-100)||(31520444-31520496)
chr4 (24-159)||(56241849-56241985)
[»] scaffold0007 (1 HSPs)
scaffold0007 (48-159)||(29137-29248)
[»] scaffold0369 (1 HSPs)
scaffold0369 (48-159)||(8424-8536)
[»] scaffold0005 (1 HSPs)
scaffold0005 (48-128)||(253103-253183)
[»] scaffold0020 (1 HSPs)
scaffold0020 (20-146)||(138535-138662)
[»] scaffold0381 (1 HSPs)
scaffold0381 (48-78)||(9086-9116)
[»] scaffold0172 (1 HSPs)
scaffold0172 (149-186)||(15215-15252)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 4e-82; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 3602630 - 3602472
Alignment:
Q  1 tctaattttaattaaacatacccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3602630 tctaattttaattaaacatacccattttggtaattatacaccaaaaatcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 3602531  T
Q  101 ttttaatatatccaaacataattcaattaagttcaactcacttttagacaaaatcaatt 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3602530 ttttaatatatccaaacataattcaattaagttcaactcacttttagacaaaatcaatt 3602472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 3602451 - 3602358
Alignment:
Q  150 aaaatcaattttcatcaccgcagaaccaaacacacacgaaattaagtttgaattaaaataaaaatctcgttcaaaactggattaaaacctggtt 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  3602451 aaaatcaattttcatcaccgcagaaccaaacacacacgaaattaagtttgaattaaaataaaaatctcgttcaaaactgcattaaaacccggtt 3602358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 238 - 309
Target Start/End: Complemental strand, 3602326 - 3602255
Alignment:
Q  238 ctggttcagagccctaatattgacccttaggctatgtttgtttcaaagaaaatattgtgataaggaaagaaa 309  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3602326 ctggttcagagccctaatatagacccttaggctatgtttgtttcaaagaaaagattgtgataaggaaagaaa 3602255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 354 - 414
Target Start/End: Original strand, 3607139 - 3607199
Alignment:
Q  354 ttgttatcattgccggtaaagagaaaagggtatatgcgttaaataaaacccagttctaatc 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3607139 ttgttatcattgccggtaaagagaaaagggtatatgcgttaaataaaacccagttctaatc 3607199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 43858366 - 43858255
Alignment:
Q  18 atacccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaac 117  Q
    ||||||||||||||||||||||||| ||| ||||||||| || ||||||||||||||| ||||||| |||| ||||||||| |   ||||  ||||||||    
T  43858366 atacccattttggtaattatacacccaaaatcaattttagttaaaactatccaaacaatatgaattgataagaatcactttcacaataatgcatccaaac 43858267  T
Q  118 ataattcaatta 129  Q
    |||| |||||||    
T  43858266 ataaatcaatta 43858255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 25748004 - 25747894
Alignment:
Q  49 caattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttcaactcacttttaga 148  Q
    ||||||| |||||||||| ||||||||||| |||| |||| ||||| |||||  ||| | ||||||||||||| |||||||  |||||||||||||||      
T  25748004 caattttgattcaaactacccaaacaacataaattgataagaatcaattttaggttattgtatccaaacataaatcaattacattcaactcacttttaat 25747905  T
Q  149 caaaatcaatt 159  Q
    |||||||||||    
T  25747904 caaaatcaatt 25747894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 2213490 - 2213602
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| ||||||||||||||||||| || || |||||||||||||||||| || | | ||||||||||||| |||||| |  ||||||||||||||     
T  2213490 tcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatcaattcacattcaactcacttttt 2213589  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  2213590 agcaaaatcaatt 2213602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 28127411 - 28127299
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| ||||||||||||||||||| || || |||||||||||||||||| || | | ||||||||||||| |||||| |  ||||||||||||||     
T  28127411 tcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatcaattcacattcaactcacttttt 28127312  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  28127311 agcaaaatcaatt 28127299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 3680761 - 3680854
Alignment:
Q  51 attttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttcaactcacttt 144  Q
    ||||| ||||||| |||||||||||| ||||||  |||||||||||| ||| | ||||||| ||||||||| | |||||| |||||||||||||    
T  3680761 attttgattcaaattatccaaacaacttgaattggtaaaaatcacttctatataaatatattcaaacataaattaattaaattcaactcacttt 3680854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 16467042 - 16467182
Alignment:
Q  20 acccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacat 119  Q
    ||||||||||||||||||||| ||||| | |||||| ||  ||||||||||||| |||| ||   |||| |||||||||||  |||  ||||||||||||    
T  16467042 acccattttggtaattatacatcaaaaattaattttgatctaaactatccaaactacatcaacccataagaatcacttttacattatcatatccaaacat 16467141  T
Q  120 aattcaattaagttc-aactcacttttagacaaaatcaatt 159  Q
    || |||||| |  || ||||||||||||  |||||||||||    
T  16467142 aaatcaatttacatctaactcacttttaaccaaaatcaatt 16467182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 3853885 - 3853996
Alignment:
Q  49 caattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaa-ttaagttcaactcacttttag 147  Q
    ||||||| ||||||||||||||||||||||  ||| |||| ||||| |||||  | ||| ||||||||||||| |||| |||  |||||||||||||||     
T  3853885 caattttgattcaaactatccaaacaacatagattgataagaatcaattttacatgaatgtatccaaacataaatcaatttacattcaactcacttttaa 3853984  T
Q  148 acaaaatcaatt 159  Q
     |||||||||||    
T  3853985 tcaaaatcaatt 3853996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 18511056 - 18511198
Alignment:
Q  18 atacccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaac 117  Q
    |||||||||||||||||||| ||   ||| |||||||| ||| ||| |||||||||||||| | || |||| ||||| |||||  || || |||||||||    
T  18511056 atacccattttggtaattatgcattcaaaatcaattttgatttaaattatccaaacaacatcactttataagaatcatttttacattgatgtatccaaac 18511155  T
Q  118 ataattcaattaa-gttcaactcacttttagacaaaatcaatt 159  Q
    |||| ||||||||  || || |||||||||  |||||||||||    
T  18511156 ataaatcaattaacatttaaatcacttttaaccaaaatcaatt 18511198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 43436433 - 43436353
Alignment:
Q  20 acccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    ||||||||||||||||| ||||| ||| ||||||||||| ||| ||||||||||||||| |||| |||  ||| |||||||    
T  43436433 acccattttggtaattagacacccaaaatcaattttaatccaatctatccaaacaacatcaattcatatgaattactttta 43436353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 159
Target Start/End: Complemental strand, 34433413 - 34433318
Alignment:
Q  66 atccaaacaacatgaattaataaaaatcac-ttttattttaatatatccaaacataattcaatt-aagttcaactcacttttagacaaaatcaatt 159  Q
    |||||||||||||||||| |||| |||||| ||||| |||| | ||||||||||||| |||||| |  |||||||||||||||  |||||||||||    
T  34433413 atccaaacaacatgaatttataagaatcactttttactttattgtatccaaacataaatcaattcacattcaactcacttttaatcaaaatcaatt 34433318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 7472797 - 7472686
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttc-aactcactttta 146  Q
    |||||||| |||||||||||||||||||||| || | |||| |||||||||||  | | | ||||||||||||| |||||| |  || ||||||||||||    
T  7472797 tcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaataagtgtatccaaacataa-tcaattcacatcaaactcactttta 7472699  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  7472698 accaaaatcaatt 7472686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 8041236 - 8041374
Alignment:
Q  20 acccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacat 119  Q
    |||||||||| |||||||||    |||  ||||||| |||||||||| ||||||||||| |||| |||||||| | |||||  | | |  ||||||||||    
T  8041236 acccattttgataattatactttcaaaaacaattttgattcaaacta-ccaaacaacataaattgataaaaataaattttaagtaattgcatccaaacat 8041334  T
Q  120 aattcaattaagttcaactcacttttagacaaaatcaatt 159  Q
    || |||||||  ||||| |||||||||  |||||||||||    
T  8041335 aaatcaattacattcaattcacttttattcaaaatcaatt 8041374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 8170297 - 8170408
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttcaactcacttttag 147  Q
    ||||||||||||||||||||||||||||||| || | |||| |||||| | | ||    | ||||||||||||||  | |||  |||||||||||||||     
T  8170297 tcaattttaattcaaactatccaaacaacatcaactcataagaatcacatctgttaacgtgtatccaaacataatcaatttacattcaactcacttttaa 8170396  T
Q  148 acaaaatcaatt 159  Q
     |||||||||||    
T  8170397 tcaaaatcaatt 8170408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 5916365 - 5916254
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| |||||||||||||||||||||| || | | |  ||||||||||| |  | | ||||||||||||| |||||| |  |||||||||||||||    
T  5916365 tcaattttgattcaaactatccaaacaacatcaactcacatgaatcacttttaataaagtgtatccaaacataa-tcaattcacattcaactcactttta 5916267  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  5916266 accaaaatcaatt 5916254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 9988625 - 9988545
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt 128  Q
    |||||||| |||||||||||||||||||||| || | |||  |||||||||||  | | | ||||||||||||| ||||||    
T  9988625 tcaattttcattcaaactatccaaacaacatcaactcatatgaatcacttttaaataagtgtatccaaacataaatcaatt 9988545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 36312261 - 36312372
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| |||||||||||||||||||||| || | | |  ||||||||||| |  | | ||||||||||||| |||||| |  |||||||||||||||    
T  36312261 tcaattttgattcaaactatccaaacaacatcaactcacatgaatcacttttaataaagtgtatccaaacataa-tcaattcacattcaactcactttta 36312359  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  36312360 accaaaatcaatt 36312372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 39141593 - 39141482
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| |||||||||||||||||||||| || | |||| ||||| |||||  | | | ||||||||||||| |||||| |  | |||||||||||||    
T  39141593 tcaattttgattcaaactatccaaacaacatcaactcataagaatcatttttaaatgagtgtatccaaacataa-tcaattcatatccaactcactttta 39141495  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  39141494 accaaaatcaatt 39141482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 42516121 - 42516069
Alignment:
Q  26 tttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacat 78  Q
    |||||| ||||||||   ||| |||||||||||||||||||||||||||||||    
T  42516121 tttggttattatacattcaaaatcaattttaattcaaactatccaaacaacat 42516069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 27911367 - 27911470
Alignment:
Q  25 ttttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattc 124  Q
    |||||||||||| ||| | ||| |||||||||||| ||| |||||||| ||||| || |   || |||||||||||  | | ||||||||||||||| ||    
T  27911367 ttttggtaattagacatctaaaatcaattttaatttaaagtatccaaataacatcaacttgaaataatcacttttaaatgagtatatccaaacataaatc 27911466  T
Q  125 aatt 128  Q
    ||||    
T  27911467 aatt 27911470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 32501970 - 32502044
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataat 122  Q
    |||||||| |||||||||| |||||||| || || |  ||||||| ||||||| || ||| ||||||||||||||    
T  32501970 tcaattttgattcaaactacccaaacaatatcaactcgtaaaaattacttttaattgaatgtatccaaacataat 32502044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 12110989 - 12111026
Alignment:
Q  149 caaaatcaattttcatcaccgcagaaccaaacacacac 186  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  12110989 caaaatcaattttcgtcaccgcacaaccaaacacacac 12111026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 44619182 - 44619133
Alignment:
Q  51 attttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||||||||||||||||||||||||| || | |||| ||||| |||||    
T  44619182 attttaattcaaactatccaaacaacatcaactcataataatcattttta 44619133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 14531970 - 14531934
Alignment:
Q  149 caaaatcaattttcatcaccgcagaaccaaacacaca 185  Q
    |||||||||||||| |||||||| |||||||||||||    
T  14531970 caaaatcaattttcttcaccgcataaccaaacacaca 14531934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 23358242 - 23358294
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||||| |||||||||||||||||||||| || | || | |||||||||||    
T  23358242 tcaattttgattcaaactatccaaacaacattaactcatcacaatcactttta 23358294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 23377549 - 23377625
Alignment:
Q  109 tatccaaacataattcaa-ttaagttcaactcacttttagacaaaatcaattttcatcaccgcagaaccaaacacac 184  Q
    ||||||||||||| |||| |||  |||||||||||||||  |||||| ||||||   ||||||| ||||||||||||    
T  23377549 tatccaaacataaatcaacttacattcaactcacttttaaccaaaattaattttttccaccgcacaaccaaacacac 23377625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 28641626 - 28641678
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||||||||||||  |||||||||||||| || | |||| |||||||||||    
T  28641626 tcaattttaattcaacatatccaaacaacatcaacttataataatcactttta 28641678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 34907406 - 34907457
Alignment:
Q  23 cattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaa 75  Q
    |||||||||||||| |||||||||| |||||||||| |||  |||||||||||    
T  34907406 cattttggtaattagacaccaaaag-caattttaatccaatttatccaaacaa 34907457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 46694 - 46849
Alignment:
Q  4 aattttaattaaacatacccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattt 103  Q
    ||||||||| |  ||||| |||||||||||||||||| | ||| |||||||| |||  |||||||||||||||||||||| |||||||||||||||| ||    
T  46694 aattttaataatgcatactcattttggtaattatacatccaaaatcaattttgatttgaactatccaaacaacatgaattgataaaaatcacttttactt 46793  T
Q  104 taatatatccaaacataattcaattaagttcaactcacttttagacaaaatcaatt 159  Q
    ||||||||||||||||||  |||||||||||||||||||||||| |||||||||||    
T  46794 taatatatccaaacataaaccaattaagttcaactcacttttaggcaaaatcaatt 46849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 6e-47; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 40903324 - 40903169
Alignment:
Q  4 aattttaattaaacatacccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattt 103  Q
    ||||||||| |  ||||| |||||||||||||||||| | ||| |||||||| |||  |||||||||||||||||||||| |||||||||||||||| ||    
T  40903324 aattttaataatgcatactcattttggtaattatacatccaaaatcaattttgatttgaactatccaaacaacatgaattgataaaaatcacttttactt 40903225  T
Q  104 taatatatccaaacataattcaattaagttcaactcacttttagacaaaatcaatt 159  Q
    ||||||||||||||||||  |||||||||||||||||||||||| |||||||||||    
T  40903224 taatatatccaaacataaaccaattaagttcaactcacttttaggcaaaatcaatt 40903169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 1766393 - 1766534
Alignment:
Q  20 acccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacat 119  Q
    |||| |||||||||||| ||||  ||| |||||||||||||||| ||| |||||| ||| |||| |||| |||||||||||| ||||  |||||||| ||    
T  1766393 accctttttggtaattacacactcaaaatcaattttaattcaaattattcaaacatcatcaattgataagaatcacttttatgttaaggtatccaaatat 1766492  T
Q  120 aattcaa-ttaagttcaactcacttttagacaaaatcaattt 160  Q
    || |||| ||| ||||||||||||||||  ||||||||||||    
T  1766493 aaatcaatttaggttcaactcacttttaatcaaaatcaattt 1766534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 39634308 - 39634166
Alignment:
Q  18 atacccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaac 117  Q
    |||||||||||||||||||| ||   ||| |||||||| || |||  ||||||||||||| ||||| |||| |||||||||| ||||||  |||||||||    
T  39634308 atacccattttggtaattatgcattcaaaatcaattttgatccaagttatccaaacaacaagaatttataagaatcacttttgttttaagttatccaaac 39634209  T
Q  118 ataattcaatt-aagttcaactcacttttagacaaaatcaatt 159  Q
    |||| |||||| |  |||||||||||||||  |||||||||||    
T  39634208 ataaatcaattcatattcaactcacttttaaccaaaatcaatt 39634166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 46285481 - 46285380
Alignment:
Q  20 acccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacat 119  Q
    |||||||||||||||||||||   ||| ||||| ||||||||||||||||||||| |||  |||  ||| ||||||||| || ||||| |||||||||||    
T  46285481 acccattttggtaattatacaagcaaaatcaatcttaattcaaactatccaaacatcatatattgctaagaatcactttcatattaatgtatccaaacat 46285382  T
Q  120 aa 121  Q
    ||    
T  46285381 aa 46285380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 32186908 - 32187048
Alignment:
Q  20 acccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacat 119  Q
    ||||||||||||||||| ||||| ||| ||||||||||| ||| ||||||||||||||| |||| |||  ||| |||||||  | | |  ||||||||||    
T  32186908 acccattttggtaattagacacccaaaatcaattttaatccaatctatccaaacaacatcaattcatatgaattacttttaaatgagtgcatccaaacat 32187007  T
Q  120 aattcaattaagttc-aactcacttttagacaaaatcaatt 159  Q
    || |||||| |  || ||||||||||||  |||||||||||    
T  32187008 aaatcaatttacatctaactcacttttaatcaaaatcaatt 32187048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 41715625 - 41715765
Alignment:
Q  20 acccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacat 119  Q
    ||||||||||||||||| ||||| ||| ||||||||||| ||| ||||||||||||||| |||| |||  ||| |||||||  | | |  ||||||||||    
T  41715625 acccattttggtaattagacacccaaaatcaattttaatccaatctatccaaacaacatcaattcatatgaattacttttaaatgagtgcatccaaacat 41715724  T
Q  120 aattcaattaagttc-aactcacttttagacaaaatcaatt 159  Q
    || |||||| |  || ||||||||||||  |||||||||||    
T  41715725 aaatcaatttacatctaactcacttttaatcaaaatcaatt 41715765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 159
Target Start/End: Original strand, 48459684 - 48459818
Alignment:
Q  26 tttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattca 125  Q
    |||||| |||| ||||  ||| ||||||||||| || ||||||||||||||||  ||| |||| |||||||||||  | | | ||||||||||||| |||    
T  48459684 tttggtcattacacacttaaaatcaattttaatacatactatccaaacaacatccattcataagaatcacttttaagtaagtgtatccaaacataaatca 48459783  T
Q  126 att-aagttcaactcacttttagacaaaatcaatt 159  Q
    ||| |  |||||||||||||||  |||||||||||    
T  48459784 attcacattcaactcacttttaaccaaaatcaatt 48459818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 2839261 - 2839384
Alignment:
Q  22 ccattttggtaattatacac-caaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacata 120  Q
    |||||||||||||||||||  ||||| | |||||| | ||||| |||||||||||  | |||||| || ||||||||||   |||||  |||||||||||    
T  2839261 ccattttggtaattatacattcaaaaat-aattttgactcaaagtatccaaacaatttaaattaacaagaatcacttttgacttaatgaatccaaacata 2839359  T
Q  121 attcaattaagttcaactcactttt 145  Q
    | |||||| ||||||||||||||||    
T  2839360 aatcaatttagttcaactcactttt 2839384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 43581606 - 43581682
Alignment:
Q  23 cattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttt 99  Q
    ||||||| |||||| ||| | |||  |||||||||||||||||||||||||||||| ||||||| | ||||||||||    
T  43581606 cattttgataattacacatctaaaagcaattttaattcaaactatccaaacaacatcaattaattataatcactttt 43581682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 24771050 - 24770912
Alignment:
Q  22 ccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataa 121  Q
    ||||||||||||||| | ||| | | |||||||| |   ||| |||||||||||||| |||| |||||||||||||||| |||  |||||| ||| ||||    
T  24771050 ccattttggtaattacatacctagaatcaattttgacaaaaattatccaaacaacataaattgataaaaatcacttttagttttgtatatctaaatataa 24770951  T
Q  122 ttcaa-ttaagttcaactcacttttagacaaaatcaatt 159  Q
     |||| |||  | |||||||||||||  |||||||||||    
T  24770950 atcaatttacatccaactcacttttaaccaaaatcaatt 24770912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 34366094 - 34366042
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||||| |||||||||||||||||||||| || | ||||||||||||||||    
T  34366094 tcaatttttattcaaactatccaaacaacatcaactcataaaaatcactttta 34366042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 44967512 - 44967400
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| ||||||| |||||||||||||| || | |||| |||||||| ||||  | | ||| ||||||||| |||||| |  |||||||||||||||    
T  44967512 tcaattttgattcaaattatccaaacaacatcaactcataagaatcacttctattaaagtgtattcaaacataaatcaattcacattcaactcactttta 44967413  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  44967412 accaaaatcaatt 44967400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 48134576 - 48134628
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||||| |||||||||||||||||||||| || | ||||||||||||||||    
T  48134576 tcaattttgattcaaactatccaaacaacatcaacttataaaaatcactttta 48134628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 42752334 - 42752192
Alignment:
Q  18 atacccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaac 117  Q
    |||||||||||| ||||||| ||   ||| |||||||| ||  ||  ||||||||||||||||||| |||| ||| | ||||  |||||  |||||||||    
T  42752334 atacccattttgataattatgcattcaaaatcaattttgatctaagttatccaaacaacatgaatttataagaattatttttgctttaaggtatccaaac 42752235  T
Q  118 ataattcaatt-aagttcaactcacttttagacaaaatcaatt 159  Q
    |||| |||||| |  |||||||||||||||   ||||||||||    
T  42752234 ataaatcaattcacattcaactcacttttaacaaaaatcaatt 42752192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 128
Target Start/End: Complemental strand, 386598 - 386514
Alignment:
Q  43 aaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt 128  Q
    |||| |||||||| |||||| ||||||||||||||| || | |||| ||||||||||   ||| ||||||||||||||| ||||||    
T  386598 aaaaatcaattttgattcaatctatccaaacaacatcaa-tcataagaatcacttttcggttagtatatccaaacataaatcaatt 386514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 3342786 - 3342866
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt 128  Q
    |||||||| ||||||||||| |||||||||| || | |||| |||||||| ||||  | | ||||||||||||| ||||||    
T  3342786 tcaattttgattcaaactattcaaacaacatcaactcataagaatcacttctattaaagtgtatccaaacataaatcaatt 3342866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 160
Target Start/End: Original strand, 33746398 - 33746498
Alignment:
Q  61 aaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaa-ttaagttcaactcacttttagacaaaatcaatt 159  Q
    ||||||||||||||| ||||||| |||| ||||||  |||  ||||| || ||||||| || |||| |||  |||||||||||||||  |||||||||||    
T  33746398 aaactatccaaacaaaatgaatttataagaatcacggttaagttaatgtaaccaaacaaaaatcaatttatattcaactcacttttaatcaaaatcaatt 33746497  T
Q  160 t 160  Q
    |    
T  33746498 t 33746498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 37562566 - 37562646
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt 128  Q
    |||||||| |||||||||||||||||||||| || | |||  |||||||||||  | | | ||||||||||||| ||||||    
T  37562566 tcaattttcattcaaactatccaaacaacatcaactcatatgaatcacttttaaataagtgtatccaaacataaatcaatt 37562646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 39391250 - 39391138
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttc-aactcactttta 146  Q
    |||||||| ||||||||||| |||||||||| |||| |||| |||||||| ||    | | ||||||||||||| |||||| |  || ||||||||||||    
T  39391250 tcaattttgattcaaactattcaaacaacatcaattcataagaatcacttgtaagaaagtgtatccaaacataaatcaattcacctcaaactcactttta 39391151  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  39391150 accaaaatcaatt 39391138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 47217654 - 47217602
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    ||||||||||||||||||||||||||||||| ||   || |||||||||||||    
T  47217654 tcaattttaattcaaactatccaaacaacatcaacccatcaaaatcactttta 47217602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 3750684 - 3750794
Alignment:
Q  50 aattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcacttttaga 148  Q
    |||||| ||| |||||||||||||||||| |||| |||| | ||| || ||||  | | ||||||||||||| |||||| |  | |||||||||||||      
T  3750684 aattttgatttaaactatccaaacaacatcaattcataagattcaattatattaaagtgtatccaaacataaatcaattcacatccaactcacttttaac 3750783  T
Q  149 caaaatcaatt 159  Q
    |||||||||||    
T  3750784 caaaatcaatt 3750794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 39977520 - 39977578
Alignment:
Q  20 acccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacat 78  Q
    |||||||||| |||||| ||| | ||| |||||||||||| ||| ||||||||||||||    
T  39977520 acccattttgataattaaacatctaaaatcaattttaatttaaagtatccaaacaacat 39977578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 159
Target Start/End: Original strand, 42740366 - 42740500
Alignment:
Q  26 tttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattca 125  Q
    |||||| |||| ||||  ||| |||||||| || || ||||||||||||| || ||   |||| |||||||||||  | | |||||| |||||||| |||    
T  42740366 tttggtcattacacacttaaaatcaattttgatacatactatccaaacaatatcaacacataagaatcacttttaagtaagtatatctaaacataaatca 42740465  T
Q  126 attaa-gttcaactcacttttagacaaaatcaatt 159  Q
    |||||  ||||||| |||||||  |||||||||||    
T  42740466 attaacattcaacttacttttaaccaaaatcaatt 42740500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 3622573 - 3622461
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| ||| | |||||||||||||||| || |  ||| |||||||||||  | | | ||||||||||||| |||||| |  | |||||||||||||    
T  3622573 tcaattttgatttatactatccaaacaacatcaactcgtaagaatcacttttaagtaagtgtatccaaacataaatcaattcacatccaactcactttta 3622474  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  3622473 accaaaatcaatt 3622461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 9456101 - 9456153
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||||| ||||||||||||||||||| || || | |||| |||||||||||    
T  9456101 tcaattttgattcaaactatccaaacaagatcaactcataagaatcactttta 9456153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 43738052 - 43738000
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||||| ||||||||||||||||||||||  | | |||| |||||||||||    
T  43738052 tcaattttgattcaaactatccaaacaacatccactcataagaatcactttta 43738000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 47021915 - 47022027
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| ||||||| |||||||||||||| ||||  ||| |||||| | || |  | | ||||||||||||| |||||| |  ||||||| |||||||    
T  47021915 tcaattttcattcaaattatccaaacaacatcaattcgtaagaatcacatctagtaaagtgtatccaaacataaatcaattcactttcaacttactttta 47022014  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  47022015 accaaaatcaatt 47022027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 6e-47; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 45423938 - 45423783
Alignment:
Q  4 aattttaattaaacatacccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattt 103  Q
    ||||||||| |  ||||||||||||||||||| |||| | ||| |||||||| |||||| |||||||||||||||||||| |||| ||||||||||| ||    
T  45423938 aattttaataatgcatacccattttggtaattgtacatccaaaatcaattttgattcaagctatccaaacaacatgaattgataagaatcacttttactt 45423839  T
Q  104 taatatatccaaacataattcaattaagttcaactcacttttagacaaaatcaatt 159  Q
    ||||||||||||||||||  |||||||||||||||||||||||| |||||||||||    
T  45423838 taatatatccaaacataaaccaattaagttcaactcacttttaggcaaaatcaatt 45423783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 37698543 - 37698442
Alignment:
Q  20 acccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacat 119  Q
    |||||||||||||||||||||   ||| |||||||| ||||||||||||||||||||||  |||| ||| ||||||||| || |||||  ||||||||||    
T  37698543 acccattttggtaattatacatgtaaaatcaattttgattcaaactatccaaacaacatacattactaagaatcactttcatattaatgcatccaaacat 37698444  T
Q  120 aa 121  Q
    ||    
T  37698443 aa 37698442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 10853393 - 10853281
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaa-ttaagttcaactcactttta 146  Q
    |||||||| |||||||||||||||||||||| || | |||| |||||||||||  | | ||||||||||||||| |||| |||  || ||||||||||||    
T  10853393 tcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaagtgagtatatccaaacataaatcaatttatattaaactcactttta 10853294  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  10853293 accaaaatcaatt 10853281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 14651224 - 14651116
Alignment:
Q  51 attttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttcaactcacttttagaca 150  Q
    ||||| ||||||| |||||||||||| ||||||  |||||||||||| ||| | | |||||| ||||| || |||||||  |||||||||||||||  ||    
T  14651224 attttgattcaaattatccaaacaacttgaattggtaaaaatcacttctatgtaagtatatcaaaacacaaatcaattatattcaactcacttttaatca 14651125  T
Q  151 aaatcaatt 159  Q
    |||||||||    
T  14651124 aaatcaatt 14651116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 26519639 - 26519751
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    ||||||||  |||||||||||||||||| || || |||||||||||||||||| || | | ||||||||||||| |||||| |  ||||||||||||||     
T  26519639 tcaattttgtttcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatcaattcacattcaactcacttttt 26519738  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  26519739 agcaaaatcaatt 26519751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 8424855 - 8424744
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| ||||||||||| |||||||||| || | |||| |||||||| ||||  | | ||||||||||||| |||||| | ||||||||||||||||    
T  8424855 tcaattttgattcaaactattcaaacaacatcaactcataagaatcacttctattgaagtgtatccaaacataa-tcaattcacgttcaactcactttta 8424757  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  8424756 accaaaatcaatt 8424744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 38172433 - 38172353
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt 128  Q
    ||||||||||||||||||||||||||||||| || | |||| |||||||| ||||  | | ||||||||||||| ||||||    
T  38172433 tcaattttaattcaaactatccaaacaacatcaactcataagaatcacttctattaaagtgtatccaaacataaatcaatt 38172353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 48189567 - 48189456
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttcaactcacttttag 147  Q
    ||||||||||||||||||||||||||||||| || | |||| |||||||| | ||    | ||||||||||||||  | |||  |||||||||||||||     
T  48189567 tcaattttaattcaaactatccaaacaacatcaactcataagaatcacttctgttaacgtgtatccaaacataatcaatttacattcaactcacttttaa 48189468  T
Q  148 acaaaatcaatt 159  Q
     |||||||||||    
T  48189467 tcaaaatcaatt 48189456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 41459019 - 41459115
Alignment:
Q  19 tacccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaa 116  Q
    ||||| |||||||||||| |||   ||| ||||||||| |||||| |||||||||| |||||||| |||| |||||||||||| ||||  ||||||||    
T  41459019 taccctttttggtaattacacattcaaaatcaatttta-ttcaaattatccaaacaccatgaattgataagaatcacttttatgttaaggtatccaaa 41459115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 20813121 - 20813220
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| |||||||||||||||||||||| || | |||| ||||||||||   | | |||||||||||| || |||||| || | |||||||||||||    
T  20813121 tcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttgaataagtatatccaaacaaaaatcaattcaaatccaactcactttta 20813220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 161
Target Start/End: Complemental strand, 31766285 - 31766187
Alignment:
Q  64 ctatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattca-attaagttcaactcacttttagacaaaatcaatttt 161  Q
    ||||||||||||||| ||| ||  |||||||||||| ||| | | ||||||||||||| |||  |||| |||||||||||||||  |||||| ||||||    
T  31766285 ctatccaaacaacattaataaactaaaatcacttttttttaattgtatccaaacataaatcactttaacttcaactcacttttatccaaaattaatttt 31766187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 10334113 - 10334225
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| |||||||||||||||||||| | || | |||| ||| ||||||| |  | | ||||||||||||| |||||| |  ||||||| |||||||    
T  10334113 tcaattttgattcaaactatccaaacaacgtcaactcataagaattacttttagtaaagtgtatccaaacataaatcaattcatattcaactgactttta 10334212  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  10334213 accaaaatcaatt 10334225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 15511501 - 15511449
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||||| ||||||||||||||||||| || || | ||||||||||||||||    
T  15511501 tcaatttttattcaaactatccaaacaatatcaactcataaaaatcactttta 15511449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 30811657 - 30811546
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| ||||||||||||||||||| || || | |||| |||||||| | ||  | | ||||||||||||| |||||| |  |||||||||||||||    
T  30811657 tcaattttgattcaaactatccaaacaatatcaagtcataagaatcacttctgttaaagtgtatccaaacataa-tcaattcacattcaactcactttta 30811559  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  30811558 atcaaaatcaatt 30811546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 35425309 - 35425420
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| ||||||||||||||||||| || || | |||| |||||||| | ||  | | ||||||||||||| |||||| |  |||||||||||||||    
T  35425309 tcaattttgattcaaactatccaaacaatatcaactcataagaatcacttctgttaaagtgtatccaaacataa-tcaattcacattcaactcactttta 35425407  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  35425408 atcaaaatcaatt 35425420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 38340781 - 38340892
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| |||||||||||||||||||| | || | |||||||| |||||||  | |  |||||||||||||| |||||| |  | |||||||||||||    
T  38340781 tcaatttttattcaaactatccaaacaacgtcaacttataaaaattactttta-ataagcatatccaaacataaatcaattcacatccaactcactttta 38340879  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  38340880 accaaaatcaatt 38340892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 53074878 - 53074989
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttc-aactcactttta 146  Q
    |||||||| ||||||||||||||||||||||  | | |||| |||||||||||  | | | ||||||||||||| |||||| |  || ||||||||||||    
T  53074878 tcaattttgattcaaactatccaaacaacatccactcataagaatcacttttaagtgagtgtatccaaacataa-tcaattcacctcaaactcactttta 53074976  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  53074977 accaaaatcaatt 53074989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 30810069 - 30810019
Alignment:
Q  50 aattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||| |||||||||||||||||| ||| |||| |||| |||||||||||    
T  30810069 aattttgattcaaactatccaaacatcatcaatttataagaatcactttta 30810019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 32861828 - 32861885
Alignment:
Q  70 aaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaat 127  Q
    ||||||||| |||| |||| |||| ||||||| ||||| ||||||||||||| |||||    
T  32861828 aaacaacataaattgataagaatctcttttatgttaatgtatccaaacataaatcaat 32861885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 52813322 - 52813359
Alignment:
Q  149 caaaatcaattttcatcaccgcagaaccaaacacacac 186  Q
    |||||||||||||  |||||||||||||||||||||||    
T  52813322 caaaatcaattttactcaccgcagaaccaaacacacac 52813359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 16246220 - 16246140
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt 128  Q
    |||||||| |||||||||||||||||||||| || |  ||| |||||||| ||||  | | | ||||||||||| ||||||    
T  16246220 tcaattttgattcaaactatccaaacaacatcaactcctaagaatcacttctattaaagtgtttccaaacataaatcaatt 16246140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 42475660 - 42475736
Alignment:
Q  24 attttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    ||||||||||||||||| | |||  ||||||| ||||||  |||||||||||||  |||| |||| |||| ||||||    
T  42475660 attttggtaattatacatctaaaagcaattttgattcaatgtatccaaacaacaacaattcataagaatcgctttta 42475736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 15884195 - 15884338
Alignment:
Q  18 atacccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcac-ttttattttaatatatccaaa 116  Q
    |||||||||||||||||||| ||   ||| |||||||| || |||||||||||||||||||||||| ||||||||||| ||||| |||| | ||||||||    
T  15884195 atacccattttggtaattatgcattcaaaatcaattttgatccaaactatccaaacaacatgaatttataaaaatcactttttactttattgtatccaaa 15884294  T
Q  117 cataattcaatt-aagttcaactcacttttagacaaaatcaatt 159  Q
    ||||| |||||| |  | |||||||||||||  |||||||||||    
T  15884295 cataaatcaattcacatccaactcacttttaaccaaaatcaatt 15884338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 23628860 - 23628721
Alignment:
Q  20 acccattttggtaattatacac-caaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaaca 118  Q
    |||||||||| |||||||||   ||||||| |||||| |||||||| | ||||||||||| |||| |||| ||||| |||||  ||| | ||||||||||    
T  23628860 acccattttgataattatactttcaaaagt-aattttgattcaaaccacccaaacaacataaattgataagaatcaattttaggttattgtatccaaaca 23628762  T
Q  119 taattcaattaagttcaactcacttttagacaaaatcaatt 159  Q
    ||| |||||||  |||||||||||||||| |||||||||||    
T  23628761 taaatcaattacattcaactcacttttagtcaaaatcaatt 23628721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 25061225 - 25061337
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaa-ttaagttcaactcactttta 146  Q
    |||||||| ||||||| |||||||||| ||| |||| |||| |||||||||||| ||||  ||||||||||||| |||| ||| ||||||||||||||||    
T  25061225 tcaattttgattcaaattatccaaacatcatcaattgataagaatcacttttatgttaaggtatccaaacataaatcaatttatgttcaactcactttta 25061324  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  25061325 accaaaatcaatt 25061337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 31223373 - 31223485
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    ||||||||||||||||||||||||||||||| || | |||| |||||||| ||||  | | ||||||||||||| |||||| |  | |||||||||||||    
T  31223373 tcaattttaattcaaactatccaaacaacatcaactcataagaatcacttctattaaagtgtatccaaacataaatcaattcacatccaactcactttta 31223472  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  31223473 accaaaatcaatt 31223485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 159
Target Start/End: Original strand, 25229984 - 25230117
Alignment:
Q  26 tttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattca 125  Q
    |||||| |||| ||||  ||| |||||||| |||||||||||||||||||||| || |||||| |||||||| ||||  | | ||||||||||||| |||    
T  25229984 tttggtcattacacactcaaaatcaattttcattcaaactatccaaacaacatcaactaataagaatcacttctattaaagtgtatccaaacataa-tca 25230082  T
Q  126 att-aagttcaactcacttttagacaaaatcaatt 159  Q
    ||| |  |||||||||||||||   ||||||||||    
T  25230083 attcacattcaactcacttttaactaaaatcaatt 25230117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 26058212 - 26058292
Alignment:
Q  20 acccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    ||||||||||||||||| ||||| ||| ||||||||||| ||| ||||||||||||||| |||| |||  ||| |||||||    
T  26058212 acccattttggtaattagacacccaaaatcaattttaatccaatctatccaaacaacatcaattcatatgaattactttta 26058292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 10470589 - 10470700
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttcaactcacttttag 147  Q
    ||||||||||||||||||||||||||||||| || | |||| |||||||| | ||    | ||||||||||||||  | |||  |||||||||||||||     
T  10470589 tcaattttaattcaaactatccaaacaacatcaactcataagaatcacttctgttaacgtgtatccaaacataatcaatttacattcaactcacttttaa 10470688  T
Q  148 acaaaatcaatt 159  Q
     |||||||||||    
T  10470689 tcaaaatcaatt 10470700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 41898 - 41979
Alignment:
Q  18 atacccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttt 99  Q
    |||||||||||||||||||| |||  ||| | |||||| || ||| ||||||||||||| |||||| |||| ||||||||||    
T  41898 atacccattttggtaattatgcactcaaaataaattttgatccaagctatccaaacaacgtgaatttataagaatcactttt 41979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 5167393 - 5167430
Alignment:
Q  149 caaaatcaattttcatcaccgcagaaccaaacacacac 186  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5167393 caaaatcaattttcatcaccgcagaaccaaacacacac 5167430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 43729004 - 43728893
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| |||||||||||||||||||||| || | |||| |||||||||||  | | | ||||||||||||| |||||| |  | |||||||||||||    
T  43729004 tcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaataagtttatccaaacataa-tcaattcacatccaactcactttta 43728906  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  43728905 agcaaaatcaatt 43728893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 4369929 - 4369818
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttcaactcacttttag 147  Q
    |||||||| |||||| ||||||||||||||| || | |||| |||||||||||  | |   || |||||||||| |||||| |  ||||||||||||||     
T  4369929 tcaattttgattcaacctatccaaacaacatcaactcataagaatcacttttaagtgagggtacccaaacataaatcaattcacatcaactcacttttaa 4369830  T
Q  148 acaaaatcaatt 159  Q
     |||||||||||    
T  4369829 ccaaaatcaatt 4369818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 413
Target Start/End: Complemental strand, 30804672 - 30804605
Alignment:
Q  346 gaaacattttgttatcattgccggtaaagagaaaagggtatatgcgttaaataaaacccagttctaat 413  Q
    |||||||||||||||||||||   |||| |||||||| | ||||||||||||||||| || |||||||    
T  30804672 gaaacattttgttatcattgctaataaaaagaaaaggatgtatgcgttaaataaaacacatttctaat 30804605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 32365079 - 32365176
Alignment:
Q  49 caattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaa-ttaagttcaactcactttt 145  Q
    |||||||||||||||||||| ||||| ||| |||| ||   ||||| |||||||| ||||| | ||||||||| |||| |||  ||||||||||||||    
T  32365079 caattttaattcaaactatctaaacatcataaattgatggtaatcaattttatttaaatatgttcaaacataaatcaatttacattcaactcactttt 32365176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 1199826 - 1199938
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| |||||||||||||||||||||| |||  | || |||||||| || |  | | ||||||||||||| |||||| |  |||||||||||||||    
T  1199826 tcaattttgattcaaactatccaaacaacatcaatccacaagaatcacttctaataaagtgtatccaaacataaatcaattcacattcaactcactttta 1199925  T
Q  147 gacaaaatcaatt 159  Q
      |||||| ||||    
T  1199926 accaaaattaatt 1199938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 7826481 - 7826429
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||||| |||||| ||||||||||||||| |||| |||| |||||||||||    
T  7826481 tcaattttgattcaacctatccaaacaacatcaattcataagaatcactttta 7826429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 13055997 - 13056049
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||||| ||||||||||||||||||| || || | ||||||||||||||||    
T  13055997 tcaatttttattcaaactatccaaacaatatcaactcataaaaatcactttta 13056049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 12247419 - 12247530
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttcaactcacttttag 147  Q
    |||||||| ||||||| | |||||||||||| || | ||||||||||||||||    | | ||||||||||||||| | |||  | |||||||||||||     
T  12247419 tcaattttgattcaaattctccaaacaacatcaactcataaaaatcacttttaaacaagtgtatccaaacataattaatttacatccaactcacttttaa 12247518  T
Q  148 acaaaatcaatt 159  Q
     || ||||||||    
T  12247519 ccagaatcaatt 12247530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 34718427 - 34718501
Alignment:
Q  24 attttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttt 99  Q
    ||||||||||||| ||| | ||||| |||||||||||||| ||||||||||||   |||| |||| ||||||||||    
T  34718427 attttggtaattagacatccaaagt-aattttaattcaaagtatccaaacaactataattcataagaatcactttt 34718501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 157
Target Start/End: Complemental strand, 46581309 - 46581202
Alignment:
Q  50 aattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttcaactcacttttagac 149  Q
    |||||| ||||||| |||||||||||| ||||||  ||||||||| ||  |  | ||| |||| |||||||| | |||||  |||||||||||||||| |    
T  46581309 aattttgattcaaattatccaaacaacttgaattggtaaaaatcaattcaacataaatttatcaaaacataaatgaattacattcaactcacttttagtc 46581210  T
Q  150 aaaatcaa 157  Q
    | ||||||    
T  46581209 agaatcaa 46581202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 48002499 - 48002396
Alignment:
Q  43 aaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttcaactcact 142  Q
    |||| |||||||| || ||||||| | ||||| ||| |||  |||| |||||||||| |  |||| ||||||||||||| ||||||| ||| |||||| |    
T  48002499 aaaattcaatttttatgcaaactagctaaacatcataaatcgataagaatcacttttgtggtaatgtatccaaacataaatcaattacgttaaactcaat 48002400  T
Q  143 ttta 146  Q
    ||||    
T  48002399 ttta 48002396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 11023456 - 11023382
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataat 122  Q
    |||||||| |||||||||| |||||||| || || |  ||||||| ||||||| || ||| ||||||||||||||    
T  11023456 tcaattttgattcaaactacccaaacaatatcaactcgtaaaaattacttttaattgaatgtatccaaacataat 11023382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 25061356 - 25061394
Alignment:
Q  148 acaaaatcaattttcatcaccgcagaaccaaacacacac 186  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  25061356 acaaaatcaatttttgtcaccgcagaaccaaacacacac 25061394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 6464607 - 6464656
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactt 97  Q
    |||||||| |||||||||||||||||||||| || | |||| ||||||||    
T  6464607 tcaattttgattcaaactatccaaacaacatcaactcataagaatcactt 6464656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 9447533 - 9447562
Alignment:
Q  49 caattttaattcaaactatccaaacaacat 78  Q
    ||||||||||||||||||||||||||||||    
T  9447533 caattttaattcaaactatccaaacaacat 9447562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 13855787 - 13855691
Alignment:
Q  25 ttttggtaattatacac-caaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataa 121  Q
    ||||| |||||| |||| |||||| ||||||| ||  ||| ||||||||| ||||||| | ||||||||||||||||||| |||  ||| ||||||||    
T  13855787 ttttgttaattagacactcaaaag-caattttgatctaaaatatccaaacgacatgaaatcataaaaatcacttttatttgaatgcatctaaacataa 13855691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 45710048 - 45710097
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactt 97  Q
    |||||||| |||||||||||||||||||||| || | |||| ||||||||    
T  45710048 tcaattttgattcaaactatccaaacaacatcaactcataagaatcactt 45710097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 5410639 - 5410691
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||| | |||||||||||||||||||||| || | |||| |||||||||||    
T  5410639 tcaattatgattcaaactatccaaacaacatcaagtcataagaatcactttta 5410691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 6166109 - 6166220
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttc-aactcactttta 146  Q
    |||||||| |||||||||| ||||||||||| || |  ||| |||||||||||  | | | ||||||||||||| |||||| || || ||||||||| ||    
T  6166109 tcaattttgattcaaactacccaaacaacatcaactcctaagaatcacttttaaatgagtgtatccaaacataa-tcaattcagatcaaactcacttcta 6166207  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  6166208 accaaaatcaatt 6166220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 12468212 - 12468263
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||||| ||||||||||||||||||| || || | ||||||||||||||||    
T  12468212 tcaattttgattcaaactatccaaacaa-atcaactcataaaaatcactttta 12468263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 181
Target Start/End: Complemental strand, 15477424 - 15477392
Alignment:
Q  149 caaaatcaattttcatcaccgcagaaccaaaca 181  Q
    ||||||||||||||||||||||| |||||||||    
T  15477424 caaaatcaattttcatcaccgcaaaaccaaaca 15477392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 35536071 - 35536123
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||||| ||||||| |||||||||||||| || | |||| |||||||||||    
T  35536071 tcaattttgattcaaattatccaaacaacatcaactcataagaatcactttta 35536123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 49178206 - 49178254
Alignment:
Q  80 aattaataaaaatcacttttattttaatatatccaaacataattcaatt 128  Q
    |||||||||||||||||||||| | || |||| ||||||||| ||||||    
T  49178206 aattaataaaaatcacttttatgtcaagatattcaaacataaatcaatt 49178254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 7178739 - 7178878
Alignment:
Q  20 acccattttggtaattatacac-caaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaaca 118  Q
    ||||||||||||||||||||   |||||| ||||||| |||||||||| ||||||||||| |||| |||| ||||| |||||  ||| | ||||||||||    
T  7178739 acccattttggtaattatactttcaaaag-caattttgattcaaactacccaaacaacataaattgataagaatcaattttaggttattgtatccaaaca 7178837  T
Q  119 taattcaattaagttcaactcacttttagacaaaatcaatt 159  Q
    ||| |||||||  |||||||||||||||| |||||| ||||    
T  7178838 taaatcaattacattcaactcacttttagtcaaaattaatt 7178878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 3667843 - 3667955
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| ||||||||||||||||||| || || |||||||||||||||||| || | | ||||||||||||| |||||| |  ||||||||||||||     
T  3667843 tcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatcaattcacattcaactcacttttt 3667942  T
Q  147 gacaaaatcaatt 159  Q
     ||||||||||||    
T  3667943 aacaaaatcaatt 3667955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 2430419 - 2430308
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| |||||||||||||||||||||| || | |||| |||||||| ||||  | | ||||||||||||| |||||| | ||||||||||||||||    
T  2430419 tcaattttgattcaaactatccaaacaacatcaactcataagaatcacttctattgaagtgtatccaaacataa-tcaattcatgttcaactcactttta 2430321  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  2430320 accaaaatcaatt 2430308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 35760178 - 35760290
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| ||||||||||||||||||| || || |||||||||||| ||||| || | | ||||||||||||| |||||| |  ||||||||||||||     
T  35760178 tcaattttgattcaaactatccaaacaatatcaactaataaaaatcagttttaattgagtgtatccaaacataaatcaattcacattcaactcacttttt 35760277  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  35760278 agcaaaatcaatt 35760290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 3747741 - 3747640
Alignment:
Q  20 acccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacat 119  Q
    |||||||||||||||| ||||   ||| |||||||| ||| ||||||||||||||||||  |||| ||| ||||||||| || |||||  ||||||||||    
T  3747741 acccattttggtaattttacatgtaaaatcaattttgattaaaactatccaaacaacatacattactaagaatcactttcatattaatgcatccaaacat 3747642  T
Q  120 aa 121  Q
    ||    
T  3747641 aa 3747640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 2694911 - 2694771
Alignment:
Q  20 acccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacat 119  Q
    |||| |||||||||||| ||||  ||| |||||||| ||||||| ||| |||||| ||| |||| |||| |||||||||||| ||||  |||| ||| ||    
T  2694911 accctttttggtaattacacactcaaaatcaattttgattcaaattatacaaacatcatcaattgataagaatcacttttatgttaagttatctaaaaat 2694812  T
Q  120 -aattcaattaagttcaactcacttttagacaaaatcaatt 159  Q
     |||| | ||| | ||||||||||||||  |||||||||||    
T  2694811 aaattaatttatgatcaactcacttttaaccaaaatcaatt 2694771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 41834881 - 41834993
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagtt-caactcactttta 146  Q
    |||||||| |||||||||||||||||||||| ||||  ||| |||||||| || |  | | ||||||||||||| |||||| | || |||||||||||||    
T  41834881 tcaattttcattcaaactatccaaacaacatcaattcgtaagaatcacttctagtaaagtgtatccaaacataaatcaattcacttccaactcactttta 41834980  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  41834981 accaaaatcaatt 41834993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 158
Target Start/End: Original strand, 10058063 - 10058174
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagtt-caactcactttta 146  Q
    |||||||| |||||||||||||||||||||| ||||  ||| |||||||| || |  | | ||||||||||||| |||||| | || |||||||||||||    
T  10058063 tcaattttcattcaaactatccaaacaacatcaattcgtaagaatcacttctagtaaagtgtatccaaacataaatcaattcatttccaactcactttta 10058162  T
Q  147 gacaaaatcaat 158  Q
      ||||||||||    
T  10058163 accaaaatcaat 10058174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 33954022 - 33953913
Alignment:
Q  50 aattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttcaactcacttttagac 149  Q
    |||||| ||||||||||||| |||||||| || | || | |||||||| ||||  | | ||||||||||||||  | ||| |||||||||||||||| |     
T  33954022 aattttgattcaaactatccgaacaacatcaactcatcagaatcacttctattaaagtgtatccaaacataatcaatttacgttcaactcacttttaaat 33953923  T
Q  150 aaaatcaatt 159  Q
    ||||||||||    
T  33953922 aaaatcaatt 33953913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 13253205 - 13253094
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| ||||||||||| |||||||||| || | |||| |||||||||||  | | | ||||||||||||| |||||| |  |||||||||||||||    
T  13253205 tcaattttgattcaaactattcaaacaacatcaactcataagaatcacttttaaatgagtgtatccaaacataa-tcaattcatattcaactcactttta 13253107  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  13253106 accaaaatcaatt 13253094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 9275607 - 9275495
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttc-aactcactttta 146  Q
    |||| ||| |||||||  ||||||||||||| || | |||| ||||| |||||||  | | ||||||||||||| ||||||||  || ||||||||||||    
T  9275607 tcaagtttcattcaaatcatccaaacaacatcaactcataagaatcaattttattaaagtgtatccaaacataaatcaattaacatctaactcactttta 9275508  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  9275507 accaaaatcaatt 9275495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 78
Target Start/End: Original strand, 7714929 - 7714959
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacat 78  Q
    |||||||||||||||||||||||||||||||    
T  7714929 tcaattttaattcaaactatccaaacaacat 7714959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 32454528 - 32454578
Alignment:
Q  50 aattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||| |||||||||||||||||||||| || | |||| |||||||||||    
T  32454528 aattttgattcaaactatccaaacaacatcaactcataagaatcactttta 32454578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 3747582 - 3747545
Alignment:
Q  149 caaaatcaattttcatcaccgcagaaccaaacacacac 186  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  3747582 caaaatcaatttttatcaccgcataaccaaacacacac 3747545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 4569234 - 4569153
Alignment:
Q  18 atacccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttt 99  Q
    |||||||||||||||||||| ||   ||| |||||||| ||  ||| |||||||||||| ||| || |||| ||||||||||    
T  4569234 atacccattttggtaattatgcattcaaaatcaatttttatcaaaattatccaaacaacgtgattttataagaatcactttt 4569153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 41740716 - 41740664
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||||| ||| |||||||||||||||||| || | |||| |||||||||||    
T  41740716 tcaattttgatttaaactatccaaacaacatcaactcataacaatcactttta 41740664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 2071690 - 2071582
Alignment:
Q  51 attttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttcaactcacttttagaca 150  Q
    ||||| ||||||| |||||||||||| ||||||| |||||||||||| | ||| ||| | ||||||||| | |||||||  |||||||||||||||| ||    
T  2071690 attttgattcaaattatccaaacaacttgaattagtaaaaatcacttctttttaaatttttccaaacatgaatcaattacattcaactcacttttagtca 2071591  T
Q  151 aaatcaatt 159  Q
    |||||||||    
T  2071590 aaatcaatt 2071582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 3619221 - 3619097
Alignment:
Q  21 cccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacata 120  Q
    ||||||||||||||||||||   ||| |||||||| ||||||||||||||||||||||  ||| |||| ||||||||| || ||||| |||||||||| |    
T  3619221 cccattttggtaattatacatttaaaatcaattttgattcaaactatccaaacaacatacattgataagaatcactttcatattaatgtatccaaacaca 3619122  T
Q  121 attcaattaagttcaactcactttt 145  Q
    | ||||||    |||||||||||||    
T  3619121 aatcaatttcactcaactcactttt 3619097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 22552896 - 22552786
Alignment:
Q  18 atacccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaac 117  Q
    ||||||||||| ||||||||||| | ||| ||||||||| || ||| ||||||||||||||||||| |||| |||||||||||   ||||  ||||||||    
T  22552896 atacccattttagtaattatacatccaaaatcaattttagttgaaagtatccaaacaacatgaattgataataatcacttttacaataatgcatccaaac 22552797  T
Q  118 ataattcaatt 128  Q
    |||| ||||||    
T  22552796 ataaatcaatt 22552786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 31246471 - 31246329
Alignment:
Q  18 atacccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaac 117  Q
    |||||||||||||||||||| ||   ||| |||||||| || |||  ||||||||||||||||||| |||| ||||||||||  |||||  |||||||||    
T  31246471 atacccattttggtaattatgcatttaaaatcaattttgatccaagttatccaaacaacatgaatttataagaatcacttttgctttaaggtatccaaac 31246372  T
Q  118 ataattcaatt-aagttcaactcacttttagacaaaatcaatt 159  Q
    |||| |||||| |  |||||||||||||||   ||||||||||    
T  31246371 ataaatcaattcacattcaactcacttttaacaaaaatcaatt 31246329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 3467516 - 3467628
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| ||||||||||||||| |||||| |||| |||| |||||||||||  | |||||||||||||| || |||||| |  |||||||||||||||    
T  3467516 tcaattttgattcaaactatccaaccaacatcaattcataagaatcacttttaaataaatatatccaaacagaaatcaattcacattcaactcactttta 3467615  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  3467616 accaaaatcaatt 3467628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 3097332 - 3097220
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttc-aactcactttta 146  Q
    |||||||| |||||||||||||||||||||| || | |||| |||||||||||  | | ||||||||||||||| |||||| |  || ||||||||||||    
T  3097332 tcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaagtgagtatatccaaacataaatcaattcatatcaaactcactttta 3097233  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  3097232 accaaaatcaatt 3097220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 15206649 - 15206793
Alignment:
Q  18 atacccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaac 117  Q
    |||||| ||||||||||||| ||   ||| ||||||||    ||||||||||||||||||||||||  ||| |||||||| ||  | ||| |||||||||    
T  15206649 ataccctttttggtaattatgcattcaaaatcaattttgggccaaactatccaaacaacatgaatttttaagaatcacttctaagtcaatgtatccaaac 15206748  T
Q  118 ataattcaatt-aagttcaactcacttttagacaaaatcaatttt 161  Q
    |||| |||||| |  |||||||||||||||  |||||||||||||    
T  15206749 ataaatcaattcacattcaactcacttttacccaaaatcaatttt 15206793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 24297740 - 24297644
Alignment:
Q  25 ttttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataa 121  Q
    ||||||||||||||||   ||| |||||||| ||||||||||||||||||||||| |||| ||| ||||||||| || |||||  ||||||| ||||    
T  24297740 ttttggtaattatacatgtaaaatcaattttgattcaaactatccaaacaacatgcattactaagaatcactttcatattaatgcatccaaatataa 24297644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 14382188 - 14382274
Alignment:
Q  60 caaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttcaactcactttta 146  Q
    ||||||||||||| |||||||||| |||| ||||||||| |   |||| ||||||||||||| ||||||| |||||| |||||||||    
T  14382188 caaactatccaaataacatgaattgataagaatcactttaaggataatgtatccaaacataaatcaattatgttcaaatcactttta 14382274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 37458447 - 37458344
Alignment:
Q  30 gtaattatacaccaaaagtcaattttaattcaaactatccaaacaaca-----tgaattaataaaaatcacttttattttaatatatccaaacataattc 124  Q
    |||||||||||   ||| |||||||| |||||||||||||||||| ||     |||||| |||| |||||||||||| | ||||||||||||||||| ||    
T  37458447 gtaattatacattcaaaatcaattttgattcaaactatccaaacatcacatcatgaattgataagaatcacttttatgtcaatatatccaaacataaatc 37458348  T
Q  125 aatt 128  Q
    ||||    
T  37458347 aatt 37458344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 37117297 - 37117339
Alignment:
Q  346 gaaacattttgttatcattgccggtaaagagaaaagggtatat 388  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  37117297 gaaacattttgttatcattgccggtaaaaagaaaagggtatat 37117339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 161
Target Start/End: Complemental strand, 8702517 - 8702420
Alignment:
Q  64 ctatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttcaactcacttttagacaaaatcaatttt 161  Q
    |||||||||||||||||||| |||| ||||||||| |   |||| ||||||||||||| |||||||  ||||| ||| |||||   ||||||||||||    
T  8702517 ctatccaaacaacatgaattgataagaatcactttaaggataatgtatccaaacataaatcaattatcttcaaatcatttttaactaaaatcaatttt 8702420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 24897710 - 24897597
Alignment:
Q  51 attttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttcaactcacttttagaca 150  Q
    ||||| ||||||| |||||||||||||| || | |||| ||||| |||||  | ||| ||||||||||||||||| | |  | |||||||||||||  ||    
T  24897710 attttgattcaaattatccaaacaacatcaactcataagaatcaattttaaataaatgtatccaaacataattcattcatatccaactcacttttaacca 24897611  T
Q  151 aaatcaattttcat 164  Q
    ||||||||| ||||    
T  24897610 aaatcaattctcat 24897597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 33627189 - 33627080
Alignment:
Q  19 tacccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaaca 118  Q
    ||||||||||| ||||| ||||   ||| || ||||| |||||||||||||||||||||| || | |||| ||||||||||| |  | | ||||||||||    
T  33627189 tacccattttgataattttacattcaaaatcgattttgattcaaactatccaaacaacattaactcataagaatcacttttagtaaagtgtatccaaaca 33627090  T
Q  119 taattcaatt 128  Q
    ||| ||||||    
T  33627089 taaatcaatt 33627080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 25698085 - 25697974
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| |||||||||||||||||||||| || | |||| |||||||||||  | | | ||||||||||||| |||||| |  | |||||||||||||    
T  25698085 tcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaataagtttatccaaacataa-tcaattcacatccaactcactttta 25697987  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  25697986 agcaaaatcaatt 25697974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 1373005 - 1373136
Alignment:
Q  31 taattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-a 129  Q
    ||||||| ||| ||||  |||||  ||| ||| ||||||||||||||| ||| ||  |||||||||||| | | | | ||||||||||||| ||| || |    
T  1373005 taattattcacaaaaaaacaattccaatccaatctatccaaacaacattaataaactaaaatcacttttttgtaattgtatccaaacataaatcacttca 1373104  T
Q  130 agttcaactcacttttagacaaaatcaatttt 161  Q
    | |||||||||||||||  |||||||||||||    
T  1373105 acttcaactcacttttatccaaaatcaatttt 1373136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 43550874 - 43550989
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| ||||||| |||||||||||||| ||   | || ||||||||||| |  | | ||||||||||||| |||||| |  |||||||||||||||    
T  43550874 tcaattttgattcaaattatccaaacaacatcaacccacaagaatcacttttaataaagtgtatccaaacataaatcaattcacattcaactcactttta 43550973  T
Q  147 gacaaaatcaattttc 162  Q
      ||||||||||||||    
T  43550974 accaaaatcaattttc 43550989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 41289210 - 41289104
Alignment:
Q  22 ccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataa 121  Q
    |||||||||||||| | ||   ||| |||||||| |||||||||||||||||||||| ||   |||| ||||||||||| |  | | |||||||||||||    
T  41289210 ccattttggtaattttgcattcaaaatcaattttgattcaaactatccaaacaacatcaacctataagaatcacttttagtaaagtgtatccaaacataa 41289111  T
Q  122 ttcaatt 128  Q
     ||||||    
T  41289110 atcaatt 41289104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 4941907 - 4941795
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttc-aactcactttta 146  Q
    |||||||||||||||| ||| |||||||||| || | |||| |||| ||||||  | | | ||||||||||||| |||||| |  || ||||||||||||    
T  4941907 tcaattttaattcaaattattcaaacaacatcaactcataagaatcgcttttaaataattttatccaaacataaatcaattcacctcaaactcactttta 4941808  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  4941807 atcaaaatcaatt 4941795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 27649729 - 27649781
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||||| |||||||||||||||||||||| || | |||| |||||||||||    
T  27649729 tcaattttgattcaaactatccaaacaacatcaactcataagaatcactttta 27649781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 40792326 - 40792218
Alignment:
Q  51 attttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttcaactcacttttagaca 150  Q
    ||||| || |||| |||| ||| ||| ||||||  |||||||||||| ||| | ||||||| |||| |||| ||||||   |||||||||||||||  ||    
T  40792326 attttgatccaaattatctaaataacttgaattggtaaaaatcacttctatgtaaatatattcaaatataaatcaattgcattcaactcacttttaatca 40792227  T
Q  151 aaatcaatt 159  Q
    |||||||||    
T  40792226 aaatcaatt 40792218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 159
Target Start/End: Complemental strand, 22936910 - 22936807
Alignment:
Q  57 attcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcacttttagacaaaatc 155  Q
    |||||||||||||||||||||| |||  | || |||||||| || |  | | ||||||||||||| |||||| |  |||||||||||||||  |||||||    
T  22936910 attcaaactatccaaacaacatcaatccacaagaatcacttctaataaagtgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatc 22936811  T
Q  156 aatt 159  Q
    ||||    
T  22936810 aatt 22936807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 9695421 - 9695372
Alignment:
Q  132 ttcaactcacttttagacaaaatcaattttcatcaccgcagaaccaaaca 181  Q
    ||||||||||||||| |||||||||||| |  ||||| ||||||||||||    
T  9695421 ttcaactcacttttaaacaaaatcaattcttgtcaccacagaaccaaaca 9695372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 184
Target Start/End: Original strand, 19649209 - 19649306
Alignment:
Q  89 aaatcacttttatttt-aatatatccaaacataattcaattaag-ttcaactcacttttagacaaaatcaattttcatcaccgcagaaccaaacacac 184  Q
    ||||||||||| |||| ||  ||||||||||||| ||| || |  |||||||||||||||  |||||||||||||   ||||||| ||||||||||||    
T  19649209 aaatcacttttgttttgaaggtatccaaacataaatcactttacattcaactcacttttaaccaaaatcaattttttccaccgcacaaccaaacacac 19649306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 24297586 - 24297549
Alignment:
Q  149 caaaatcaattttcatcaccgcagaaccaaacacacac 186  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  24297586 caaaattaatttttatcaccgcagaaccaaacacacac 24297549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 26490888 - 26491028
Alignment:
Q  20 acccattttggtaattataca-ccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaaca 118  Q
    |||| |||||||||||||||  ||||||| ||||||| ||   ||||||| |||||| || ||||||||| |||||||| ||| | ||  ||||||||||    
T  26490888 accccttttggtaattatacctccaaaag-caatttttatctcaactatctaaacaaaataaattaataagaatcacttctatataaaggtatccaaaca 26490986  T
Q  119 taattcaattaagt-tcaactcacttttagacaaaatcaatt 159  Q
     || |||||| |   ||||||||||||||  |||||||||||    
T  26490987 caaatcaatttacactcaactcacttttaaccaaaatcaatt 26491028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 8130098 - 8130062
Alignment:
Q  149 caaaatcaattttcatcaccgcagaaccaaacacaca 185  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  8130098 caaaatcaatttttatcaccgcagaactaaacacaca 8130062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 29023222 - 29023274
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||||| |||||||||||||||||||||| || | |||| ||||| |||||    
T  29023222 tcaattttgattcaaactatccaaacaacatcaactcataacaatcaatttta 29023274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 41981140 - 41981192
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||||| ||||||| |||||||||||||| || | |||| |||||||||||    
T  41981140 tcaattttgattcaaagtatccaaacaacatcaactcataagaatcactttta 41981192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 42148988 - 42149100
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttc-aactcactttta 146  Q
    |||||||| ||||||| |||| ||||||||| || | |||  |||||||||||  | | | ||||||||||||| |||||| |  || ||||||||||||    
T  42148988 tcaattttgattcaaattatctaaacaacatcaactcatacgaatcacttttaaataagtctatccaaacataaatcaattcacctcaaactcactttta 42149087  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  42149088 accaaaatcaatt 42149100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 5584171 - 5584063
Alignment:
Q  51 attttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttcaactcacttttagaca 150  Q
    ||||| ||| ||| |||||||||||| ||||||  |||||||||||| ||| | ||||||||||||||||| |||||||  || ||||||||||||| ||    
T  5584171 attttgatttaaattatccaaacaacttgaattggtaaaaatcacttctatataaatatatccaaacataaatcaattacattaaactcacttttagtca 5584072  T
Q  151 aaatcaatt 159  Q
    |||||||||    
T  5584071 aaatcaatt 5584063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 21255030 - 21254893
Alignment:
Q  22 ccattttggtaattatacac-caaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacata 120  Q
    ||||||||||||||||||   |||||| ||||||| |||||||||| | ||||||||| |||| |||| ||||| |||||  ||| | ||||||||||||    
T  21255030 ccattttggtaattatactttcaaaag-caattttgattcaaactaccgaaacaacataaattgataagaatcaattttaggttattgtatccaaacata 21254932  T
Q  121 attcaattaagttcaactcacttttagacaaaatcaatt 159  Q
    | |||||||  |||||||||||||||  |||| ||||||    
T  21254931 aatcaattacattcaactcacttttaatcaaattcaatt 21254893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 10826068 - 10826178
Alignment:
Q  50 aattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcacttttaga 148  Q
    |||||| ||||||||||||||||||| || || | |||| |||||||||||  | | |||||||||||| || |||||| || |||||||||||||||      
T  10826068 aattttgattcaaactatccaaacaaaatcaactcataagaatcacttttaaataagtatatccaaacaaaaatcaattcaaattcaactcacttttaac 10826167  T
Q  149 caaaatcaatt 159  Q
    |||||||||||    
T  10826168 caaaatcaatt 10826178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 1312595 - 1312451
Alignment:
Q  18 atacccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaac 117  Q
    |||||||||||||||||||| ||   ||| ||||||||   |||||||||||||||||||| ||||  ||| ||||| || ||  | ||| ||||| |||    
T  1312595 atacccattttggtaattatgcattcaaaatcaattttgggtcaaactatccaaacaacattaatttttaagaatcaattctaagtcaatgtatccgaac 1312496  T
Q  118 ataattcaatt-aagttcaactcacttttagacaaaatcaatttt 161  Q
    |||| ||||||    |||||||||||||||  |||||||||||||    
T  1312495 ataaatcaattcgcattcaactcacttttaaccaaaatcaatttt 1312451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 6208186 - 6208077
Alignment:
Q  50 aattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcacttttaga 148  Q
    |||||| |||||||||||| ||||||||| || | |||| ||||||||||| |  | | ||||||||||||| |||||| |  |||||||||||||||      
T  6208186 aattttgattcaaactatctaaacaacatcaactcataagaatcacttttagtaaagtgtatccaaacataa-tcaattcacattcaactcacttttaat 6208088  T
Q  149 caaaatcaatt 159  Q
    |||||||||||    
T  6208087 caaaatcaatt 6208077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 13739183 - 13739233
Alignment:
Q  50 aattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||| |||||||||||||||||||||| || | |||| |||||||||||    
T  13739183 aattttgattcaaactatccaaacaacatcaactcataagaatcactttta 13739233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 13744683 - 13744733
Alignment:
Q  50 aattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||| |||||||||||||||||||||| || | |||| |||||||||||    
T  13744683 aattttgattcaaactatccaaacaacatcaactcataagaatcactttta 13744733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 3050645 - 3050700
Alignment:
Q  19 tacccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaa 75  Q
    |||||||||||||||||| |||||||||  |||||||||| |||  |||||||||||    
T  3050645 tacccattttggtaattagacaccaaaa-acaattttaatccaatttatccaaacaa 3050700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 31132439 - 31132491
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||||| |||||||||||||||||||||| ||   |||| |||||||||||    
T  31132439 tcaattttgattcaaactatccaaacaacatcaacccataagaatcactttta 31132491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 33899131 - 33899019
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttc-aactcactttta 146  Q
    |||||||| ||| |||| |||||||||  || || | |||| |||||||||||  ||| | ||||||||||||| |||||| |  || ||||||||||||    
T  33899131 tcaattttgatttaaaccatccaaacattattaactcataagaatcacttttacattagtgtatccaaacataaatcaattcatatcaaactcactttta 33899032  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  33899031 atcaaaatcaatt 33899019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 29149433 - 29149321
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| ||||||||||||||||||| || || |||||||||||||||||| || | | ||||||||||||| |||||| |  ||||||||||||||     
T  29149433 tcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatcaattcacattcaactcacttttt 29149334  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  29149333 agcaaaatcaatt 29149321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 48 - 186
Target Start/End: Complemental strand, 2175273 - 2175134
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttcaa-ctcactttta 146  Q
    ||||||||||||||||||||||||||||||| ||   || |||||||||||||    | |  |||||||||||| |||||| |  |||| ||||||||||    
T  2175273 tcaattttaattcaaactatccaaacaacatcaacccatcaaaatcacttttaagcgagtgcatccaaacataaatcaattcacatcaaactcactttta 2175174  T
Q  147 gacaaaatcaattttcatcaccgcagaaccaaacacacac 186  Q
      ||||||||||||||| | |||| |||||||||||||||    
T  2175173 atcaaaatcaattttcaccgccgccgaaccaaacacacac 2175134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 38305941 - 38306051
Alignment:
Q  18 atacccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaac 117  Q
    |||||||||||||||||||| ||   ||| |||||||| || |||  ||||||||||||||||||| |||| ||||||||||  |||||  |||||||||    
T  38305941 atacccattttggtaattatgcattcaaaatcaattttgatccaagttatccaaacaacatgaatttataagaatcacttttgctttaaggtatccaaac 38306040  T
Q  118 ataattcaatt 128  Q
    |||| ||||||    
T  38306041 ataaatcaatt 38306051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 159
Target Start/End: Original strand, 51922878 - 51923012
Alignment:
Q  26 tttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattca 125  Q
    |||||| ||||||||   ||| |||||||| |||||||||||||||||||||| || | |||| ||| ||||||| |  | | ||||||||||||| |||    
T  51922878 tttggtcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaattacttttagtaaagtgtatccaaacataaatca 51922977  T
Q  126 attaag-ttcaactcacttttagacaaaatcaatt 159  Q
    ||| || |||||||||||||||  |||||||||||    
T  51922978 attcagattcaactcacttttaaccaaaatcaatt 51923012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 14072463 - 14072574
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttcaactcacttttag 147  Q
    |||||||| |||||||||||||||||||||| || | || | |||||||| ||||  | | ||||||||||||||  | |||  |||||||||||||||     
T  14072463 tcaattttgattcaaactatccaaacaacatcaactcattagaatcacttctattaaagtgtatccaaacataatcaatttaccttcaactcacttttaa 14072562  T
Q  148 acaaaatcaatt 159  Q
    ||||||||||||    
T  14072563 acaaaatcaatt 14072574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 28752477 - 28752586
Alignment:
Q  50 aattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttcaactcacttttagac 149  Q
    |||||| ||||||||||||  |||| |||||||| |||| |||||||||||| ||||   |||||||||||| |||| | |  ||||||||||||||  |    
T  28752477 aatttttattcaaactatcagaacatcatgaattgataagaatcacttttatgttaaggcatccaaacataaatcaaattatgtcaactcacttttaacc 28752576  T
Q  150 aaaatcaatt 159  Q
    ||||||||||    
T  28752577 aaaatcaatt 28752586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 19592357 - 19592245
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagtt-caactcactttta 146  Q
    |||||||| |||||||||||||||||||| | ||||  ||| ||||||||||| |  | | ||||||||||||| |||||| | || |||||||||||||    
T  19592357 tcaattttcattcaaactatccaaacaacgtcaattcgtaagaatcacttttagtaaagtgtatccaaacataaatcaattcacttccaactcactttta 19592258  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  19592257 accaaaatcaatt 19592245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 48550149 - 48550289
Alignment:
Q  20 acccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacat 119  Q
    ||||||||||||||||| ||||| ||| ||||||||||| ||| |||||||||||| || |||| |||  ||| |||||||  | | |  ||||||||||    
T  48550149 acccattttggtaattagacacccaaaatcaattttaatccaatctatccaaacaatatcaattcatatgaattacttttaaatgagtgcatccaaacat 48550248  T
Q  120 aattcaattaagttc-aactcacttttagacaaaatcaatt 159  Q
    || |||||| |  || ||||||||||||  |||||||||||    
T  48550249 aaatcaatttacatctaactcacttttaatcaaaatcaatt 48550289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 48550553 - 48550441
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| |||||||||||||||||||||| || | |||| |||||||| ||||  | | ||||||||||||| |||||| |  | |||||||||||||    
T  48550553 tcaattttgattcaaactatccaaacaacatcaactcataagaatcacttctattaaagtttatccaaacataaatcaattcacatccaactcactttta 48550454  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  48550453 accaaaatcaatt 48550441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 19599646 - 19599510
Alignment:
Q  22 ccattttggtaattataca-ccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacata 120  Q
    ||||||||||||||||||  ||||||| ||||||| |||| || || ||||||||||| |||| |||| ||||| |||||  | | |  |||||||||||    
T  19599646 ccattttggtaattatacttccaaaag-caattttgattctaaata-ccaaacaacataaattgataagaatcaattttaagtaattgcatccaaacata 19599549  T
Q  121 attcaattaagttcaactcacttttagacaaaatcaatt 159  Q
    | |||||||  |||||||||||||||  |||||||||||    
T  19599548 aatcaattacattcaactcacttttattcaaaatcaatt 19599510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 54488535 - 54488677
Alignment:
Q  18 atacccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaac 117  Q
    |||||||||| ||||||||| ||   ||| |||||||| || |||  ||||||||||| ||||||| |||| ||||||||||  |||||  ||| |||||    
T  54488535 atacccatttgggtaattatgcatttaaaatcaattttgatccaagttatccaaacaaaatgaatttataagaatcacttttgctttaaggtattcaaac 54488634  T
Q  118 ataattcaatt-aagttcaactcacttttagacaaaatcaatt 159  Q
    |||| |||||| |  |||||||||||||||   ||||||||||    
T  54488635 ataaatcaattcacattcaactcacttttaacaaaaatcaatt 54488677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 14054783 - 14054891
Alignment:
Q  20 acccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacat 119  Q
    ||||||||||||||||| ||| | ||| |||||||||||| ||| ||| |||||||||| || |   || |||||||||||| | | | |||||||||||    
T  14054783 acccattttggtaattagacatccaaaatcaattttaatttaaagtattcaaacaacatcaacttgaaataatcacttttatataagtttatccaaacat 14054882  T
Q  120 aattcaatt 128  Q
    || ||||||    
T  14054883 aaatcaatt 14054891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 3652647 - 3652710
Alignment:
Q  58 ttcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataa 121  Q
    |||||||||||||||||||||| |||| ||| ||||||||| || |||||  ||||||||||||    
T  3652647 ttcaaactatccaaacaacatgcattactaagaatcactttcatattaatgcatccaaacataa 3652710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 161
Target Start/End: Complemental strand, 38740411 - 38740314
Alignment:
Q  64 ctatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcacttttagacaaaatcaatttt 161  Q
    ||||||||||||||| ||| ||  |||||||||||| ||| | | ||||||||||||| ||| || || |||||||||||||||  |||||||||||||    
T  38740411 ctatccaaacaacattaataaactaaaatcactttt-tttaattgtatccaaacataaatcacttcaacttcaactcacttttatccaaaatcaatttt 38740314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 42945046 - 42944912
Alignment:
Q  26 tttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattca 125  Q
    |||||| ||||||||   ||| |||||||| || || |||||||||||||||| ||   |||| |||||||||||  | | |||||| |||||||| |||    
T  42945046 tttggtcattatacatttaaaatcaattttgatacatactatccaaacaacatcaacacataagaatcacttttaagtaagtatatctaaacataaatca 42944947  T
Q  126 att-aagttcaactcacttttagacaaaatcaatt 159  Q
    ||| |  |||||||||||||||  |||||||||||    
T  42944946 attcacattcaactcacttttaaccaaaatcaatt 42944912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 3652753 - 3652790
Alignment:
Q  149 caaaatcaattttcatcaccgcagaaccaaacacacac 186  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  3652753 caaaatcaatttttatcaccgcagaaccaaacacacac 3652790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 28986981 - 28987030
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactt 97  Q
    |||||||| |||||||||||||||||||||| || | |||||||||||||    
T  28986981 tcaattttgattcaaactatccaaacaacatcaactcataaaaatcactt 28987030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 41866087 - 41866164
Alignment:
Q  20 acccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcactt 97  Q
    |||||||||||||||||||||   ||| | ||||||    ||||||||||||||||||| ||||| ||||||||||||    
T  41866087 acccattttggtaattatacatgcaaaattaattttggcacaaactatccaaacaacataaattagtaaaaatcactt 41866164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 6138746 - 6138634
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| |||||||||||||||||||||| || | |||  ||||| |||||  | | | ||||||||||||| |||||| |  | |||||||||||||    
T  6138746 tcaattttcattcaaactatccaaacaacatcaactcatatgaatcatttttaaataagtgtatccaaacataaatcaattcacatccaactcactttta 6138647  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  6138646 accaaaatcaatt 6138634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 14564272 - 14564192
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt 128  Q
    |||||||| |||||| ||||||||||||||| || | |||| |||||||||||  | ||  ||||||||||||| ||||||    
T  14564272 tcaattttgattcaatctatccaaacaacattaactcataagaatcacttttaactgaaggtatccaaacataaatcaatt 14564192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 39636745 - 39636857
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| ||||| |||||||||||||||| || |  ||| |||||||||||  | | | ||||||||||||| |||||| |  | |||||||||||||    
T  39636745 tcaattttgattcatactatccaaacaacatcaactcgtaagaatcacttttaagtaagtgtatccaaacataaatcaattcacatccaactcactttta 39636844  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  39636845 atcaaaatcaatt 39636857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 3652224 - 3652270
Alignment:
Q  20 acccattttggtaattatacaccaaaagtcaattttaattcaaacta 66  Q
    |||||||||||||||||||||   ||| |||||||||||||||||||    
T  3652224 acccattttggtaattatacatgtaaaatcaattttaattcaaacta 3652270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 78
Target Start/End: Complemental strand, 9889460 - 9889430
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacat 78  Q
    |||||||||||||||||||||||||||||||    
T  9889460 tcaattttaattcaaactatccaaacaacat 9889430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 9893671 - 9893721
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttt 98  Q
    |||||||||||| |||||||||||||||||| || | |||| |||||||||    
T  9893671 tcaattttaatttaaactatccaaacaacatcaactcataagaatcacttt 9893721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 26651996 - 26651862
Alignment:
Q  26 tttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattca 125  Q
    |||||| ||||||||   ||| |||||||| |||||||||||||||| |||||  | | |||| ||| ||||||| |  | | |||| |||||||| |||    
T  26651996 tttggtcattatacattcaaaatcaattttgattcaaactatccaaataacatcgactcataagaattacttttagtaaagtgtatctaaacataaatca 26651897  T
Q  126 att-aagttcaactcacttttagacaaaatcaatt 159  Q
    ||| |  |||||||||||||||  |||||||||||    
T  26651896 attcacattcaactcacttttaaccaaaatcaatt 26651862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 43781642 - 43781592
Alignment:
Q  50 aattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||| |||||||||||||||||||||| || | |||| |||||||||||    
T  43781642 aattttgattcaaactatccaaacaacatcaactcataagaatcactttta 43781592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 53531912 - 53532010
Alignment:
Q  23 cattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataa 121  Q
    |||||||| ||||| |||   ||| |||||||||||  |||||| |||||||||||  || ||||||||||||||||| ||  || || ||||||||||    
T  53531912 cattttggaaattacacattcaaaatcaattttaatcaaaactacccaaacaacatatataaataaaaatcacttttacttgcatgtagccaaacataa 53532010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 53914920 - 53914966
Alignment:
Q  109 tatccaaacataattcaattaagttcaactcacttttagacaaaatc 155  Q
    ||||||||||||| |||||||  |||||||||||||||| |||||||    
T  53914920 tatccaaacataaatcaattacattcaactcacttttagtcaaaatc 53914966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 6255119 - 6255175
Alignment:
Q  18 atacccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaa 75  Q
    ||||||||||||||||||| | |||||||| |||||||||| |||  |||||||||||    
T  6255119 atacccattttggtaattagataccaaaag-caattttaatccaatttatccaaacaa 6255175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 48257063 - 48257116
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttat 101  Q
    |||||||| || |||  ||||||||||||||||||| |||| ||||||||||||    
T  48257063 tcaattttgatccaatttatccaaacaacatgaatttataagaatcacttttat 48257116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 54683480 - 54683517
Alignment:
Q  149 caaaatcaattttcatcaccgcagaaccaaacacacac 186  Q
    |||||||||||||  |||||||||||||||||||||||    
T  54683480 caaaatcaatttttttcaccgcagaaccaaacacacac 54683517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 20191839 - 20191703
Alignment:
Q  20 acccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacat 119  Q
    |||| ||||||||||||||||   ||| | |||||| ||||||  ||||||||||||||||| | || |  |||| ||| ||  |||| |||| ||||||    
T  20191839 accctttttggtaattatacatttaaaattaattttgattcaagttatccaaacaacatgaaatgatgagcatcattttcataataatgtatctaaacat 20191740  T
Q  120 aattcaattaagttcaactcacttttagacaaaatca 156  Q
    ||  |||||   |||||||||||||||  ||||||||    
T  20191739 aaaacaattctattcaactcacttttactcaaaatca 20191703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 25312651 - 25312727
Alignment:
Q  24 attttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    ||||||||||||||||| | |||  ||||||| ||||||  |||||||||||||  |||| |||| |||| ||||||    
T  25312651 attttggtaattatacatctaaaagcaattttgattcaatgtatccaaacaacaacaattcataagaatcgctttta 25312727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 30887279 - 30887199
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt 128  Q
    |||||||| || ||||| ||||||||| ||| || | |||| |||||||||||| ||  | ||||||||||||| ||||||    
T  30887279 tcaattttgatacaaaccatccaaacatcattaactcataagaatcacttttatattggtgtatccaaacataaatcaatt 30887199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 31520496 - 31520444
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 100  Q
    |||||||| |||||||||| ||||| ||||| || | ||||||||||||||||    
T  31520496 tcaatttttattcaaactacccaaaaaacatcaactcataaaaatcactttta 31520444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 56241985 - 56241849
Alignment:
Q  24 attttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataatt 123  Q
    |||||||| ||||||||   ||| |||||||| ||| |||  ||| |||||  || || | |||| |||||||||||  ||||| ||||||||||||| |    
T  56241985 attttggtcattatacattcaaaatcaattttgatttaaatcatctaaacattatcaactcataagaatcacttttacattaatgtatccaaacataaat 56241886  T
Q  124 caattaagttc-aactcacttttagacaaaatcaatt 159  Q
    ||||| |  || ||||||||||||  |||||||||||    
T  56241885 caattcatatcaaactcacttttaatcaaaatcaatt 56241849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 29248 - 29137
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt-aagttcaactcactttta 146  Q
    |||||||| |||||||||||||||||||||| |||| |||| ||| |||| ||||  | | ||||||||||||| |||||| |  |||||||||||||||    
T  29248 tcaattttgattcaaactatccaaacaacatcaattcataagaataacttctattaaagtgtatccaaacataa-tcaattcacattcaactcactttta 29150  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  29149 accaaaatcaatt 29137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 8424 - 8536
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaattaagttc-aactcactttta 146  Q
    |||||||| |||||||||||||||||||||| || | |||||||||| |||||    | | ||||||||||||| |||||| |  || ||||||||||||    
T  8424 tcaattttgattcaaactatccaaacaacatcaactcataaaaatcatttttaaaaaagtgtatccaaacataaatcaattcacatcaaactcactttta 8523  T
Q  147 gacaaaatcaatt 159  Q
      |||||||||||    
T  8524 accaaaatcaatt 8536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 253103 - 253183
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacataattcaatt 128  Q
    |||||||| |||||| ||||||||||||||| || | |||| |||||||||||  | ||  ||||||||||||| ||||||    
T  253103 tcaattttgattcaatctatccaaacaacattaactcataagaatcacttttaactgaaggtatccaaacataaatcaatt 253183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 138662 - 138535
Alignment:
Q  20 acccattttggtaattatacaccaaaagtcaattttaattcaaactatccaaacaacatgaattaataaaaatcacttttattttaatatatccaaacat 119  Q
    |||| |||||||||||| |||   ||| |||||||| ||| ||| |||| ||||   ||| ||| |||| |||||||||||| ||||  |||||||||||    
T  138662 accctttttggtaattacacatttaaaatcaattttgatttaaattatctaaactttatggattgataagaatcacttttatgttaaggtatccaaacat 138563  T
Q  120 aattcaa-ttaagttcaactcactttta 146  Q
    || |||| ||| ||||| ||||||||||    
T  138562 aaatcaatttatgttcagctcactttta 138535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 78
Target Start/End: Original strand, 9086 - 9116
Alignment:
Q  48 tcaattttaattcaaactatccaaacaacat 78  Q
    |||||||||||||||||||||||||||||||    
T  9086 tcaattttaattcaaactatccaaacaacat 9116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 15252 - 15215
Alignment:
Q  149 caaaatcaattttcatcaccgcagaaccaaacacacac 186  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  15252 caaaatcaattttcgtcaccgcacaaccaaacacacac 15215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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