View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9942_3 (Length: 360)

Name: NF9942_3
Description: NF9942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9942_3
NF9942_3
[»] chr2 (3 HSPs)
chr2 (176-295)||(3602631-3602750)
chr2 (12-110)||(3602812-3602911)
chr2 (300-360)||(3607139-3607199)
[»] chr8 (1 HSPs)
chr8 (291-334)||(37117296-37117339)
[»] chr1 (1 HSPs)
chr1 (291-359)||(30804605-30804673)
[»] scaffold0041 (1 HSPs)
scaffold0041 (74-110)||(46528-46564)
[»] chr7 (1 HSPs)
chr7 (74-110)||(40903454-40903490)
[»] chr3 (1 HSPs)
chr3 (74-110)||(45424067-45424102)


Alignment Details
Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 176 - 295
Target Start/End: Complemental strand, 3602750 - 3602631
Alignment:
Q  176 accaatgattgattttttcaaaatagtttataaatggtaaaatttaattttttgtcnnnnnnntgattaaatttattaatacaacatacatttaatttat 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  3602750 accaatgattgattttttcaaaatagtttataaatggtaaaatttaattttttgtcaaaaaaatgattaaatttattaatacaacatacatttaatttat 3602651  T
Q  276 gctataaaatagaaaagaaa 295  Q
    ||||||||||||||||||||    
T  3602650 gctataaaatagaaaagaaa 3602631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 3602911 - 3602812
Alignment:
Q  12 agagaaaacaggattgagtcacttgcagaaaggtttaaatatttgtatttaaatattgaca-aatgttattgcctttaaatatttgtatttgttatattt 110  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  3602911 agagaaaacatgattgagtcacttgcagaaaggtttaaatatttgtatttaaatattgacattatgttattgcctttaaatatttgtatttgttatattt 3602812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 3607139 - 3607199
Alignment:
Q  300 ttgttatcattgccggtaaagagaaaagggtatatgcgttaaataaaacccagttctaatc 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3607139 ttgttatcattgccggtaaagagaaaagggtatatgcgttaaataaaacccagttctaatc 3607199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 37117296 - 37117339
Alignment:
Q  291 agaaacattttgttatcattgccggtaaagagaaaagggtatat 334  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  37117296 agaaacattttgttatcattgccggtaaaaagaaaagggtatat 37117339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 30804673 - 30804605
Alignment:
Q  291 agaaacattttgttatcattgccggtaaagagaaaagggtatatgcgttaaataaaacccagttctaat 359  Q
    ||||||||||||||||||||||   |||| |||||||| | ||||||||||||||||| || |||||||    
T  30804673 agaaacattttgttatcattgctaataaaaagaaaaggatgtatgcgttaaataaaacacatttctaat 30804605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 46528 - 46564
Alignment:
Q  74 atgttattgcctttaaatatttgtatttgttatattt 110  Q
    |||||||||||||||||||||||||||| ||||||||    
T  46528 atgttattgcctttaaatatttgtattttttatattt 46564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 40903490 - 40903454
Alignment:
Q  74 atgttattgcctttaaatatttgtatttgttatattt 110  Q
    |||||||||||||||||||||||||||| ||||||||    
T  40903490 atgttattgcctttaaatatttgtattttttatattt 40903454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 45424102 - 45424067
Alignment:
Q  74 atgttattgcctttaaatatttgtatttgttatattt 110  Q
    |||||||||||||||||||||||||||| ||||||||    
T  45424102 atgttattgcctttaaatatttgtattt-ttatattt 45424067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University