View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9943_high_2 (Length: 497)
Name: NF9943_high_2
Description: NF9943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9943_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 18 - 483
Target Start/End: Complemental strand, 47281233 - 47280768
Alignment:
| Q |
18 |
atatctatcttatttatttttgacttgggattgcagtaaccacaactagtgaagcaataactgcattgactatgttgcgagaaaacatagacatgtttga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
47281233 |
atatctatcttatttatttttgacttgggattgcagtaaccacaactagtgaagcaataactgcattgactatgttgcaagaaaacatagacatgtttga |
47281134 |
T |
|
| Q |
118 |
cctggtaatcgctgaagttcacatgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagtaagttggga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47281133 |
cctggtaatcgctgaagttcacatgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagtaagttgggg |
47281034 |
T |
|
| Q |
218 |
ggatctgttttataattttcagctcttcatctttgttctgtttcttcattttcactctcatttatttatataattattaatcaatgattgttgttataaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47281033 |
ggatctgttttataattttcagctcttcatctttgttctgtttcttcattttcactctcatttatttatataattattaatcaatgattgttgttataaa |
47280934 |
T |
|
| Q |
318 |
ttgtttgatttcagtgttgtctgctcatggtgaaacggagctggtgatgaaggcaatttcccacggtgcctgtgattttctgctgaaacctgtgagattg |
417 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47280933 |
ttgtttgatttcagtgttgtctgcacatggtgaaacggagctggtgatgaaggcaatttcccacggtgcccgtgattttctgctgaaacctgtgagattg |
47280834 |
T |
|
| Q |
418 |
gaggagctaaggaacatttggcagcatgtaattcggaataaggagtcccagtttgtttggtctgtg |
483 |
Q |
| |
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| T |
47280833 |
gaggagctaaggaacatttggcagcatgtaattcggaataaggagtcccagtttgtttggtctgtg |
47280768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 44 - 455
Target Start/End: Complemental strand, 47275529 - 47275111
Alignment:
| Q |
44 |
gggattgcagtaaccacaactagtgaagcaataactgcattgactatgttgcgagaaaacatagacatgtttgacctggtaatcgctgaagttcacatgc |
143 |
Q |
| |
|
|||||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || ||| ||| |
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| T |
47275529 |
gggattgcagtaacgacaactagtcaagcaaaaacggcattgactatgttgcgagaaaacaaagacaagtttgacctggtaatcgctgatgtgcacctgc |
47275430 |
T |
|
| Q |
144 |
ctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcc---tgtcataagtaagttgggaggatctgttttataattttcagc |
240 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| | |||||| | ||| ||||| ||| |||||||| |||| ||||||||| | |||| ||||| |
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| T |
47275429 |
ctgacatggatggacttaagctgcttgaacttgtggaacttgagacggaccttccggtcgtcgtaagtaag-tggggggatctgttctgtaatcttcagt |
47275331 |
T |
|
| Q |
241 |
tcttcatctttgttctgtttcttcattttcactctcatttatttatataattattaatcaatgattgtt--gtta---taaattgtttgatttcagtgtt |
335 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || | | |||||| ||||||||||| |
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|
| T |
47275330 |
tcttcatctttgctttgtttcttcattttcactctcatttattcatataattattaatcaatgattgtttggtgaacgtttgttgttttatttcagtgtt |
47275231 |
T |
|
| Q |
336 |
gtctgctcatggtgaaacggagctggtgatgaaggcaatttcccacggtgcctgtgattttctgctgaaacctgtgagattggaggagctaaggaacatt |
435 |
Q |
| |
|
||||| | | || | ||||| |||||||||||| ||| ||| ||||||| |||||||||| |||||||||||||||| ||||||||| || |||| |
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| T |
47275230 |
gtctgaatctagcgataatgagctagtgatgaaggcagttttccatggtgcctctgattttctggtgaaacctgtgagattacaggagctaaagaccatt |
47275131 |
T |
|
| Q |
436 |
tggcagcatgtaattcggaa |
455 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
47275130 |
tggcagcatgtaattcggaa |
47275111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 31 - 464
Target Start/End: Complemental strand, 49061346 - 49060903
Alignment:
| Q |
31 |
ttatttttgacttgggattgcagtaaccacaactagtgaagcaataactgcattgactatgttgcgagaaaacatagacatgtttgacctggtaatcgct |
130 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| |||||||||| || ||||| |||||| ||||||||| ||||| |||||||||||||||| | |
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|
| T |
49061346 |
ttatttctgactggggattgcagtaaccacaactagtcaagcaataacggcgttgaccatgttgagagaaaacaaagacaagtttgacctggtaatcagt |
49061247 |
T |
|
| Q |
131 |
gaagttcacatgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagtaagttgggaggatctgttttat |
230 |
Q |
| |
|
|| || |||||||| |||||||||||| | |||||||| |||||||| |||||||||||||| ||||| ||||||||||||| | |||||||| | | |
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|
| T |
49061246 |
gatgtacacatgccggacatggatggatttaagctgcttgaacttgtgggacttgaaatggaccttcccgtcataagtaagt---ggggatctgtcatgt |
49061150 |
T |
|
| Q |
231 |
aattttcagctcttcatct--------ttgttctgtttcttcattttcactctcatttatttatataattattaatcaatga-----ttgttgttataaa |
317 |
Q |
| |
|
||| || ||| || || | || |||| ||| |||||||| ||| | |||||| ||| | || |||||||||| ||| | ||||||| |
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|
| T |
49061149 |
aatctttggctgttaatttttttcttctttttctatttattcattttgactattgtttattgatacgactactaatcaatgatacttttggttttataaa |
49061050 |
T |
|
| Q |
318 |
ttgtttgatttcagtgttgtctgctcatggtgaaacggagctggtgatgaaggcaatttcccacggtgcctgtgattttctgctgaaacctgtgagattg |
417 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || ||||||||||||| | ||||||||| ||||||||||||| ||||||||||||||||||||| |
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|
| T |
49061049 |
atgtttgatttcagtgttgtctgcatatggtgatacaaagctggtgatgaaaggaatttcccatggtgcctgtgattatctgctgaaacctgtgagatta |
49060950 |
T |
|
| Q |
418 |
gaggagctaaggaacatttggcagcatgtaattcggaataaggagtc |
464 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||| ||| |||| |
|
|
| T |
49060949 |
gaggagctaaagaacatttggcagcatgtaattaggaagaagaagtc |
49060903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 449
Target Start/End: Original strand, 2893287 - 2893425
Alignment:
| Q |
311 |
ttataaattgtttgatttcagtgttgtctgctcatggtgaaacggagctggtgatgaaggcaatttcccacggtgcctgtgattttctgctgaaacctgt |
410 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| ||| ||| || || |||||||||| | |||| |||||||| ||||||| ||||||||||||||| |
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|
| T |
2893287 |
ttataaagtgtttgatttcagtgttttctgcgaatgatgatccgaagatggtgatgaaaggaattgaacacggtgcttgtgattatctgctgaaacctgt |
2893386 |
T |
|
| Q |
411 |
gagattggaggagctaaggaacatttggcagcatgtaat |
449 |
Q |
| |
|
||| || | ||| || || |||||||||||||||||| |
|
|
| T |
2893387 |
tagactgaaagaggtacagatcatttggcagcatgtaat |
2893425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 2888554 - 2888633
Alignment:
| Q |
134 |
gttcacatgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagtaagtt |
213 |
Q |
| |
|
||||| ||||| |||||||||||| | ||||| || || ||||| |||||||| |||||| | ||||||||||||||||| |
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|
| T |
2888554 |
gttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagatggatttacctgtcataagtaagtt |
2888633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 2904657 - 2904736
Alignment:
| Q |
134 |
gttcacatgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagtaagtt |
213 |
Q |
| |
|
||||| ||||| |||||||||||| | ||||| || || ||||| |||||||| ||||| || |||||||| |||||||| |
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|
| T |
2904657 |
gttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcatcagtaagtt |
2904736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 34316047 - 34316118
Alignment:
| Q |
138 |
acatgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagta |
209 |
Q |
| |
|
||||||||||||||||||| |||| || || |||| ||| |||||||| ||||||||||||||||| |||| |
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|
| T |
34316047 |
acatgcctgacatggatggtttcaaacttcttgaacatgttggacttgagatggatcttcctgtcattagta |
34316118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 90 - 213
Target Start/End: Complemental strand, 48870569 - 48870446
Alignment:
| Q |
90 |
tgttgcgagaaaacatagacatgtttgacctggtaatcgctgaagttcacatgcctgacatggatggactcaagctgctggaacttgtaggacttgaaat |
189 |
Q |
| |
|
||||| ||||||||| | ||| |||||||| |||||| | | ||||| ||||| |||||||||||| | ||||| || || ||||| |||||||| || |
|
|
| T |
48870569 |
tgttgagagaaaacaaaaacaattttgacctagtaatcagtaatgttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagat |
48870470 |
T |
|
| Q |
190 |
ggatcttcctgtcataagtaagtt |
213 |
Q |
| |
|
||| || ||||||||| ||||||| |
|
|
| T |
48870469 |
ggacctacctgtcataggtaagtt |
48870446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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