View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9943_high_4 (Length: 417)
Name: NF9943_high_4
Description: NF9943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9943_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 133 - 404
Target Start/End: Original strand, 44628410 - 44628680
Alignment:
| Q |
133 |
taacacatcaattttatcaaactccaacctttcaatgcatttttgatgaatattttttgtttgtttgttggagtattggttgaaagttgaaacagtactc |
232 |
Q |
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| T |
44628410 |
taacacatcaattttatcgaactccaacctttcaatgcatttt-gttgaatattttttgtttgtttgttggagtattggttgaaagttgaaacagtactc |
44628508 |
T |
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| Q |
233 |
aagttaatggtttactatacttttaagttttagccaccgaccaagttccaaaattttcacttgatgaggttctgtattgcaaaaataatcaaattaataa |
332 |
Q |
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| T |
44628509 |
aagttattggtttactatacttttaagttttagccaccgaccaagttccaaaattttcacttgatgaggttgtgtattgcaaaaataatcaaattaataa |
44628608 |
T |
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| Q |
333 |
taagtacctcaatgtaaatataattagatttgcatggaccacggaatgctattggcctcagtaagaatgtct |
404 |
Q |
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| T |
44628609 |
taagtacctcaatgtaaatataattagatttgcatggaccacggaatgctattggcctcagtaagaatgtct |
44628680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 44628319 - 44628383
Alignment:
| Q |
40 |
tatacttgagaggtgagatcaacttaagtcttaatgtgaatacttgccagaaataatatggttat |
104 |
Q |
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| T |
44628319 |
tatacttgagaggtgagatcaacttaagtcttaatgtgaatacttgccggaaataatatggttat |
44628383 |
T |
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