View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9943_high_5 (Length: 401)
Name: NF9943_high_5
Description: NF9943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9943_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 10990656 - 10990925
Alignment:
| Q |
16 |
agggccttctttgaacaagtatttgtggcctcataagaaatggtttgtatccgtaaagaatttcgtcttctgttggtacatgtaaccctctggtattaga |
115 |
Q |
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| T |
10990656 |
agggccttctttgaacaagtatttgtggcctcataagaaatggtttgtatccttaaagaatttcgtcttctattggtacatgtaaccctctggtattaga |
10990755 |
T |
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| Q |
116 |
ttacttgctttaaaattagtcatattggcaaaccatggccttttagtgaaaacaaacaaatgttcatcagaaaattctgctattattctttgctcattct |
215 |
Q |
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| T |
10990756 |
ttacttgctttaaaattagtcatattggcaaaccatggccttttagtgaaaacaaacaaatgttcatcagaaaattttgctattattctttgctcattct |
10990855 |
T |
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| Q |
216 |
tggtgacttgaggattttcttatcttgatagtagcagtattcattccaacattcttggtttagaatcacc |
285 |
Q |
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| T |
10990856 |
tggtgacttgaggattttcttatcttgatagtagcagtattcattccagcattcttggtttagaatcacc |
10990925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 325 - 401
Target Start/End: Original strand, 10991113 - 10991189
Alignment:
| Q |
325 |
taccatgaaatgacattttttcggattcaacatcaaatttgtttttacagatctctttcaatacatcatatacgtct |
401 |
Q |
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| T |
10991113 |
taccatgaaatgacattttttcggattcaacatcaaatttgtttttacacatctctttcaatacatcatatacgtct |
10991189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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