View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9943_high_7 (Length: 385)
Name: NF9943_high_7
Description: NF9943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9943_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 31222490 - 31222205
Alignment:
| Q |
17 |
agctaccaaattaataactcagagttaacgtgtagatctctttctaaaaccgcattacacacttcacatcactcctgcttgaatccgcatnnnnnnnctg |
116 |
Q |
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| T |
31222490 |
agctaccaaattaataactcagagttaacgtgtagatctctttctaaaaccgcattacacacttcacatcactcttgcttgaatccgcataaaaaaactg |
31222391 |
T |
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| Q |
117 |
cgcctttttcttcttctttccagcaaaaccttaatgggtattcatgatctctatctccgaaagccatgacatgaagattctcaactttggtaccatcgaa |
216 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31222390 |
cgcctttttcttcttctttccaacaaaaccttaatgggtattcatgatctctatctcccaaagccatgacatgaagattctcaactttggtaccatcgaa |
31222291 |
T |
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| Q |
217 |
aatgtccttcacgtaggacaagacaagcctcacgttgttgttcctgtcgacaatatcgataatgtttctcctcggaactctacggt |
302 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31222290 |
aatgtccttcacgtaggacaagacaagtctcacgttgttgttcctgtcgacaatatcgataatgtttctcctcggaactctacggt |
31222205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 31246814 - 31246766
Alignment:
| Q |
59 |
tctaaaaccgcattacacacttcacatcactc-ctgcttgaatccgcat |
106 |
Q |
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| T |
31246814 |
tctaaaactgcattacacacttcacatcactctttgcttgaatctgcat |
31246766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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