View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9943_high_8 (Length: 336)
Name: NF9943_high_8
Description: NF9943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9943_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 3339646 - 3339952
Alignment:
| Q |
1 |
ccatcgttgatgaaatccacaatgcatgtggaataataattagtaacatcaagagaaaatatcaaaaatcatgatggggtgggaacaaaaataaaatgtg |
100 |
Q |
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| T |
3339646 |
ccatggttgataaaatccacaatgcatgtggaataataattagtaaaat------aaaataa-aaaaatcatgatggggtgggaacaaaaataaaatgtg |
3339738 |
T |
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| Q |
101 |
tctcaaaaagtacatgcctaaatggtgttcccttcaattttgacataatttggtacctcatatgtcctactaattaccagacacacttcaacattgtaat |
200 |
Q |
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| T |
3339739 |
tctcaaaaagtacatgcctaaatggtgttcccttcaattttgacataatttggtacctcatatg---tactaattaccagacacacttcaacattgtaat |
3339835 |
T |
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| Q |
201 |
gagaacatggaaaaaatagttttcttggtgaagatattcagttcgcactaataatctctccaaattaagatttctaggaagcaaattggcgtaatagaga |
300 |
Q |
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| T |
3339836 |
gagaacatggaaaaaatagttttcttggtgaagatattcagttcgcac---taatctctccaaattaagatttctaggaagcaaattggcgtaatagaga |
3339932 |
T |
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| Q |
301 |
attgttgtgagagtggaagt |
320 |
Q |
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| T |
3339933 |
attgttgtgagagtggaagt |
3339952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 162 - 311
Target Start/End: Original strand, 3344991 - 3345137
Alignment:
| Q |
162 |
atgtcctactaattaccagacacacttcaacattgtaatgagaacatggaaaaaatagttttcttggtgaagatattcagttcgcactaataatctctcc |
261 |
Q |
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| T |
3344991 |
atgtcctagtaattaccagacacacctcagcattgtaatgagaaaatggaagaaataattttcttggtgaagaaattcccttcg---tactaatctctcc |
3345087 |
T |
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| Q |
262 |
aaattaagatttctaggaagcaaattggcgtaatagagaattgttgtgag |
311 |
Q |
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| T |
3345088 |
aagttaagatttcttggaagcaaatttccataataaagaatggttgtgag |
3345137 |
T |
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