View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9943_low_1 (Length: 660)

Name: NF9943_low_1
Description: NF9943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9943_low_1
NF9943_low_1
[»] chr3 (37 HSPs)
chr3 (154-650)||(33112809-33113304)
chr3 (154-650)||(31887075-31887576)
chr3 (154-648)||(18429902-18430395)
chr3 (149-642)||(23774147-23774640)
chr3 (154-642)||(48633877-48634371)
chr3 (156-648)||(33852307-33852792)
chr3 (154-586)||(2977017-2977453)
chr3 (154-581)||(24382583-24383017)
chr3 (154-611)||(45256888-45257344)
chr3 (154-639)||(41020637-41021127)
chr3 (237-534)||(1845867-1846170)
chr3 (483-648)||(45898008-45898173)
chr3 (153-403)||(23888646-23888897)
chr3 (154-331)||(40508857-40509035)
chr3 (154-330)||(39641786-39641963)
chr3 (489-610)||(23888442-23888563)
chr3 (152-367)||(51454156-51454376)
chr3 (17-141)||(35424551-35424692)
chr3 (483-557)||(54093022-54093096)
chr3 (154-301)||(45898324-45898472)
chr3 (487-555)||(26449016-26449084)
chr3 (154-245)||(1847645-1847736)
chr3 (78-141)||(30812286-30812348)
chr3 (154-245)||(45897050-45897141)
chr3 (164-403)||(30599811-30600052)
chr3 (154-245)||(2975460-2975551)
chr3 (172-219)||(24381762-24381809)
chr3 (418-471)||(51454059-51454112)
chr3 (154-245)||(23887198-23887289)
chr3 (154-245)||(33111841-33111932)
chr3 (309-375)||(2226075-2226141)
chr3 (418-464)||(45898186-45898232)
chr3 (167-244)||(31885531-31885608)
chr3 (154-219)||(40998515-40998580)
chr3 (81-133)||(8426552-8426604)
chr3 (418-462)||(40508739-40508783)
chr3 (230-274)||(46197796-46197840)
[»] chr1 (30 HSPs)
chr1 (153-650)||(18183573-18184068)
chr1 (154-645)||(42134482-42134975)
chr1 (172-610)||(45380646-45381090)
chr1 (154-648)||(35479596-35480099)
chr1 (154-648)||(36895142-36895634)
chr1 (204-648)||(31801683-31802126)
chr1 (154-403)||(46638681-46638931)
chr1 (154-403)||(44157433-44157682)
chr1 (154-625)||(47269104-47269580)
chr1 (436-648)||(6575454-6575666)
chr1 (489-648)||(46638438-46638597)
chr1 (154-401)||(33685126-33685372)
chr1 (418-648)||(44158056-44158282)
chr1 (489-645)||(33682857-33683004)
chr1 (153-404)||(27940607-27940859)
chr1 (222-381)||(6575260-6575418)
chr1 (82-133)||(292508-292559)
chr1 (153-219)||(33679258-33679324)
chr1 (309-403)||(15104597-15104692)
chr1 (323-375)||(5783513-5783565)
chr1 (153-256)||(5783363-5783466)
chr1 (154-245)||(18180500-18180591)
chr1 (162-245)||(27952500-27952583)
chr1 (235-365)||(51121986-51122117)
chr1 (310-403)||(31238368-31238462)
chr1 (484-558)||(51122234-51122308)
chr1 (154-219)||(11152545-11152610)
chr1 (154-219)||(47264124-47264189)
chr1 (153-245)||(5784867-5784959)
chr1 (309-404)||(50555969-50556065)
[»] chr5 (24 HSPs)
chr5 (154-650)||(35292010-35292505)
chr5 (152-650)||(43317696-43318186)
chr5 (154-642)||(38177723-38178217)
chr5 (154-642)||(38204947-38205441)
chr5 (154-646)||(32087514-32088005)
chr5 (154-648)||(18728233-18728726)
chr5 (154-648)||(35395333-35395823)
chr5 (154-403)||(33256400-33256650)
chr5 (214-545)||(32838236-32838567)
chr5 (489-649)||(33256733-33256893)
chr5 (223-365)||(38597014-38597157)
chr5 (154-266)||(38596868-38596980)
chr5 (541-642)||(32836981-32837082)
chr5 (81-133)||(41741381-41741433)
chr5 (154-245)||(40330515-40330606)
chr5 (154-245)||(32089925-32090016)
chr5 (164-375)||(17574328-17574539)
chr5 (78-133)||(2431057-2431111)
chr5 (196-247)||(24498065-24498116)
chr5 (312-375)||(42620686-42620749)
chr5 (319-404)||(12737304-12737390)
chr5 (151-245)||(33257760-33257854)
chr5 (525-558)||(24497112-24497145)
chr5 (151-219)||(42619286-42619354)
[»] chr7 (34 HSPs)
chr7 (154-646)||(23953805-23954302)
chr7 (154-566)||(2167479-2167890)
chr7 (154-645)||(33038435-33038921)
chr7 (151-641)||(40784343-40784838)
chr7 (154-591)||(46812265-46812706)
chr7 (154-611)||(47341355-47341810)
chr7 (154-646)||(46996335-46996826)
chr7 (154-622)||(27955370-27955841)
chr7 (300-566)||(38613610-38613881)
chr7 (154-404)||(2492327-2492577)
chr7 (152-552)||(8423002-8423407)
chr7 (154-552)||(35344011-35344414)
chr7 (151-299)||(38613459-38613608)
chr7 (154-305)||(38614884-38615035)
chr7 (154-245)||(40785548-40785639)
chr7 (418-549)||(23168354-23168485)
chr7 (153-245)||(30108564-30108656)
chr7 (309-404)||(39859101-39859197)
chr7 (154-245)||(8421416-8421507)
chr7 (154-245)||(35342425-35342516)
chr7 (154-245)||(45465184-45465275)
chr7 (495-558)||(48704516-48704579)
chr7 (152-216)||(33037691-33037755)
chr7 (153-217)||(38614820-38614884)
chr7 (323-375)||(45463819-45463871)
chr7 (312-371)||(48303576-48303635)
chr7 (309-375)||(13168279-13168345)
chr7 (596-645)||(36755395-36755444)
chr7 (596-645)||(36761192-36761241)
chr7 (154-214)||(2168865-2168925)
chr7 (494-550)||(11683136-11683192)
chr7 (309-404)||(45359492-45359588)
chr7 (484-536)||(48455274-48455326)
chr7 (310-401)||(48852222-48852314)
[»] chr8 (27 HSPs)
chr8 (154-642)||(42897404-42897898)
chr8 (154-641)||(37525659-37526147)
chr8 (154-648)||(32822361-32822861)
chr8 (154-603)||(38882465-38882921)
chr8 (204-646)||(33750017-33750458)
chr8 (154-471)||(33159952-33160272)
chr8 (151-401)||(1320614-1320865)
chr8 (154-648)||(31821418-31821902)
chr8 (154-529)||(462114-462494)
chr8 (154-404)||(8654500-8654750)
chr8 (489-625)||(8654837-8654972)
chr8 (152-404)||(31201016-31201269)
chr8 (421-558)||(11721481-11721618)
chr8 (151-253)||(25373614-25373716)
chr8 (151-253)||(25707293-25707395)
chr8 (495-552)||(31200873-31200930)
chr8 (495-555)||(9184734-9184794)
chr8 (154-375)||(9184383-9184605)
chr8 (155-219)||(38881429-38881493)
chr8 (154-245)||(40019156-40019247)
chr8 (162-216)||(461184-461238)
chr8 (153-245)||(33748331-33748423)
chr8 (82-133)||(36646814-36646865)
chr8 (309-375)||(13108259-13108325)
chr8 (309-375)||(38547383-38547449)
chr8 (323-401)||(28433611-28433691)
chr8 (172-245)||(37524876-37524949)
[»] chr2 (34 HSPs)
chr2 (154-642)||(37417273-37417771)
chr2 (154-648)||(29909293-29909784)
chr2 (154-603)||(15432328-15432779)
chr2 (154-648)||(42001610-42002107)
chr2 (154-642)||(39035-39521)
chr2 (154-645)||(91981-92470)
chr2 (155-535)||(25619661-25620049)
chr2 (418-642)||(42879585-42879809)
chr2 (158-358)||(42879360-42879560)
chr2 (154-552)||(15372499-15372902)
chr2 (154-552)||(41706539-41706933)
chr2 (158-306)||(39560-39709)
chr2 (418-552)||(39793-39926)
chr2 (483-552)||(11315070-11315139)
chr2 (484-552)||(40097883-40097951)
chr2 (483-554)||(4416683-4416754)
chr2 (82-133)||(25665453-25665504)
chr2 (230-274)||(11315339-11315383)
chr2 (309-404)||(19908138-19908234)
chr2 (312-375)||(11022936-11022999)
chr2 (312-375)||(28246801-28246864)
chr2 (154-245)||(28248175-28248266)
chr2 (154-256)||(361445-361547)
chr2 (154-219)||(41168-41233)
chr2 (315-404)||(17946256-17946345)
chr2 (309-402)||(10716777-10716871)
chr2 (154-245)||(11021533-11021624)
chr2 (154-245)||(15373888-15373979)
chr2 (82-133)||(23357523-23357574)
chr2 (153-256)||(28246662-28246765)
chr2 (154-245)||(41708430-41708521)
chr2 (412-550)||(20940990-20941128)
chr2 (315-404)||(7744205-7744294)
chr2 (154-219)||(42880837-42880902)
[»] chr4 (37 HSPs)
chr4 (154-566)||(4519376-4519785)
chr4 (154-646)||(44558118-44558617)
chr4 (152-648)||(2827405-2827897)
chr4 (174-648)||(27624826-27625290)
chr4 (154-625)||(2350159-2350631)
chr4 (154-561)||(51041645-51042054)
chr4 (154-625)||(35996063-35996539)
chr4 (154-639)||(10762581-10763071)
chr4 (154-552)||(44794481-44794884)
chr4 (152-404)||(47941809-47942062)
chr4 (154-371)||(10372612-10372830)
chr4 (418-610)||(10372339-10372530)
chr4 (154-245)||(4520451-4520542)
chr4 (483-558)||(25993835-25993910)
chr4 (73-133)||(28988061-28988121)
chr4 (312-375)||(5484678-5484741)
chr4 (320-375)||(27382284-27382339)
chr4 (154-245)||(39923007-39923098)
chr4 (312-375)||(42880684-42880747)
chr4 (312-375)||(43779790-43779853)
chr4 (310-403)||(11255813-11255907)
chr4 (483-557)||(27382453-27382527)
chr4 (309-403)||(2693125-2693221)
chr4 (154-219)||(42879275-42879340)
chr4 (154-219)||(43778389-43778454)
chr4 (154-219)||(44992808-44992873)
chr4 (323-375)||(39083788-39083840)
chr4 (323-375)||(39189531-39189583)
chr4 (154-213)||(5486084-5486143)
chr4 (483-558)||(13450728-13450803)
chr4 (312-375)||(39921632-39921695)
chr4 (162-245)||(44792942-44793025)
chr4 (154-219)||(10371057-10371122)
chr4 (154-219)||(10767976-10768041)
chr4 (310-404)||(25993653-25993748)
chr4 (154-219)||(39085178-39085243)
chr4 (82-123)||(54152278-54152319)
[»] chr6 (13 HSPs)
chr6 (151-625)||(29077325-29077804)
chr6 (151-625)||(29112297-29112776)
chr6 (154-552)||(2968139-2968528)
chr6 (152-561)||(4641353-4641767)
chr6 (172-373)||(3018336-3018538)
chr6 (483-591)||(30641018-30641123)
chr6 (413-555)||(25171826-25171968)
chr6 (154-245)||(17950561-17950652)
chr6 (312-375)||(17951965-17952028)
chr6 (312-375)||(35175786-35175849)
chr6 (489-550)||(4314599-4314660)
chr6 (154-219)||(29114802-29114867)
chr6 (322-403)||(30641203-30641284)
[»] scaffold0477 (1 HSPs)
scaffold0477 (152-371)||(6540-6760)
[»] scaffold1041 (1 HSPs)
scaffold1041 (177-253)||(2121-2197)


Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 154 - 650
Target Start/End: Complemental strand, 33113304 - 33112809
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| |||| ||| |||||||||||||||    
T  33113304 gagtgaaccatcaaattagtccttgaatttttacgggtcggccaaaatcatccctcaattatgcgaaatatcaacttagtccctaaatttgtcagacgtc 33113205  T
Q  254 cattaaaaaggtccctccgtcaagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtg 353  Q
    ||| |||||||||||||||||||||| || ||||||||||  |||||||||||||||||| || | |||||||||||| |||||||||| ||||||||||    
T  33113204 catcaaaaaggtccctccgtcaagtgatccgttagccatgccgatctgtcgcccagcatgttgcgctgtcttgtacacgtggcaaaaaggaagccacgtg 33113105  T
Q  354 ttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnnatgttattccaattttgcccctatattacccatacctccttc 453  Q
    |||| ||||||||||||||||||| ||||||||||| ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  33113104 ttcaaggactaatttgatggaagtggaaaaattccacttttcacttttcaatttttttatgttattccaattttgcccctatattacccatacctccttc 33113005  T
Q  454 ctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccg 553  Q
    ||||||||||||||| ||||||       |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33113004 ctcacatttcactcataaacat-aaaaaacgtctctgacccttctcattcccgctaaaactttctccattctcacctctccaaaatcatcatcatctcca 33112906  T
Q  554 gcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcacccttt 650  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||    
T  33112905 gcgattctcacgtttttgaagtttctgtgttcgactgtggttaaaggtaacacctttcctctagtttatcaagtttctgtgttcgtattcacccttt 33112809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 154 - 650
Target Start/End: Complemental strand, 31887576 - 31887075
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| ||||||||||||| |||| || | |||| ||| || |||||||||||| | |||||| |||| ||||||||||||||| |||    
T  31887576 gagtgaaccatcaaattcgtccttgaattttcacggatcggtcaaattcaaccatcaattatgcgaaatatcaacttagtccctgaatttgtcagatgtc 31887477  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
     || |||||||||||||||| ||||||||| |||||||||| |||| |||||||  |||||||||| |||||||||||| |||||||||| ||||||  |    
T  31887476 tatcaaaaaggtccctccgtccaagtgctccgttagccatgctgatttgtcgccttgcatgctgtgttgtcttgtacacgtggcaaaaaggaagccatat 31887377  T
Q  353 gttcacggactaatttgatgga-agttgaaaaattccagttttcacttttca----annnnnnnatgttattccaattttgcccctatattacccatacc 447  Q
    ||||| |||||||||||||||| ||| |||||||||||||||||||||||||    |       |||||||||||||||| ||| | |||||| ||||||    
T  31887376 gttcaaggactaatttgatggatagtggaaaaattccagttttcacttttcagtttaattttttatgttattccaatttttcccttgtattactcatacc 31887277  T
Q  448 tccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatca 547  Q
    ||||||||||||||||||||| ||| ||       ||||  ||| | |||||||||||||||||||||||||||||| |||||||  ||||||||| |||    
T  31887276 tccttcctcacatttcactcaaaaatat-caaaaacgtcattgaacattctccttcccgctaaaactttctccattcccacctctataaaatcatcgtca 31887178  T
Q  548 tctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcaccc 647  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||    
T  31887177 tctccggcgattctcgcggttttgaagtttctgtgttcggctgtggctaaaggtaacacctttcctctagtttatcaagtttatgtgttcgtattcaccc 31887078  T
Q  648 ttt 650  Q
    |||    
T  31887077 ttt 31887075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 154 - 648
Target Start/End: Complemental strand, 18430395 - 18429902
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||| | |||||| |||| ||||||| |||||||||||    
T  18430395 gagtgaaccatcaaattcgtccttgaattttaacgggtcagccaaattcatccctcaattatgcgaaatatcaacttagtccctgaatatgtcagacgtc 18430296  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    || ||||||||||||||||| ||||||||| |||||||||| |||  |||||||| |||||| ||| |||||||||||| |||||| ||| || ||||||    
T  18430295 caataaaaaggtccctccgtccaagtgctccgttagccatggtgacatgtcgccctgcatgccgtgttgtcttgtacacgtggcaagaaggaaaccacgt 18430196  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnnatgttattccaattttgcccctatattacccatacctcctt 452  Q
    ||||| ||||||||||||| ||| | |||||| |||| ||||||| |||           || | |||| |||||||||||  |||||||||||||| ||    
T  18430195 gttcaaggactaatttgattgaattggaaaaagtccaattttcac-tttattttttttcctgcttttcccattttgcccctgcattacccatacctcatt 18430097  T
Q  453 cctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctcc 552  Q
    | |||||||||| |||||| |||       | ||| ||||| ||| | || |||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  18430096 cttcacatttcagtcagaagcat-caaaaacatccttgacctttcacatttccgctaaaactttctccattctcacccctccaaaatcatcatcatcacc 18429998  T
Q  553 ggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcaccct 648  Q
    ||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||   | |||||||||  || | ||||| ||||||||||    
T  18429997 ggcgattttgacgtttttgaagtttctgtgttcggctgtgattaaaggtaacacctttcaaattgtttatcaagattctatgttcgtattcaccct 18429902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 149 - 642
Target Start/End: Original strand, 23774147 - 23774640
Alignment:
Q  149 agatcgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcag 248  Q
    |||| ||||||||||||||||| ||||||||||||| ||| ||| |||||| || |||||||||||||||| | |||||  |||| ||||||||||||||    
T  23774147 agattgagtgaaccatcaaattcgtccttgaattttcacgagtcggccaaattcgtccctcaattatgcgaaatatcaatttagtccctgaatttgtcag 23774246  T
Q  249 acgtccattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagc 347  Q
    |||||||| ||||| ||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| |||||| ||| ||||    
T  23774247 acgtccatcaaaaaagtccctc-gtctaagtgctctgttagccatgttgatctgtcgccctgcatgatgtgttgtcttgtacacgtggcaataaggaagc 23774345  T
Q  348 cacgtgttcacggactaatttgatggaagttgaaaaattccagttttcacttttc-----aannnnnnnatgttattccaattttgcccctatattaccc 442  Q
    |||||||||| ||||||||| ||| ||  | |||||| |||| ||||||||||||     ||        |  | |||| |||||||||||  |||||||    
T  23774346 cacgtgttcaaggactaattcgattgatttggaaaaagtccaattttcacttttcagtttaatttttttctacttttcccattttgcccctgcattaccc 23774445  T
Q  443 atacctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcat 542  Q
    |||    ||||| |||||||| |||||||||||       ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23774446 ata----cttccccacatttctctcagaaacat-aaaaaacgtccttgactcttctccttcccgctaaaactttctccattctcacctctccaaaaccat 23774540  T
Q  543 catcatctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatatt 642  Q
    |||||||| || ||||||||| ||| ||||||||  |||||||||||||||||||||||||||| |||||| || |||||||| ||| ||||||| ||||    
T  23774541 catcatcttcgacgattctcatgttcttgaagttgttgtgttcggctgtggttaaaggtaacacatttcctctaatttatcaagtttctgtgttcgtatt 23774640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 154 - 642
Target Start/End: Original strand, 48633877 - 48634371
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| ||||||||||||| ||||||| | |||| || ||| |||||||||||| | |||||| |||| |||||||||||||||||||    
T  48633877 gagtgaaccatcaaattcgtccttgaattttcacgggtcggtcaaattcgtccatcaattatgcgaaatatcaacttagtccctgaatttgtcagacgtc 48633976  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtg----atgtcttgtacacatggcaaaaagaaagcc 348  Q
    ||| |||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||| ||||     |||||||||||| |||||||||| |||||    
T  48633977 catcaaaaaggtccctccgtccaagtgctccgttagccatgttgatctgtcgccctgcatgatgtgttgtttgtcttgtacacgtggcaaaaaggaagcc 48634076  T
Q  349 acgtgttcacggactaatttgatggaagttg---aaaaattccagttttcacttttca---annnnnnnatgttattccaattttgcccctatattaccc 442  Q
    ||||||||| ||||||||||||| ||| |||   ||||| || | |||||||||||||            || | |||| |||||||||||  |||| ||    
T  48634077 acgtgttcaaggactaatttgattgaa-ttgaaaaaaaagtctaattttcacttttcagtttaatttttctgcttttcccattttgcccctgcattatcc 48634175  T
Q  443 atacctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcat 542  Q
     ||| |||||||||||||||| |||| ||||||       ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||   |     
T  48634176 ttacttccttcctcacatttctctcaaaaacat-caaaaacgtccttgactcttctccttcccgctaaaactttctccattctcacctctccaaa---ac 48634271  T
Q  543 catcatctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatatt 642  Q
    ||||||||||| |||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||| || |||||||| ||| ||||||| ||||    
T  48634272 catcatctccgacgattcgcacgtttttgaagttgttgtgttcggctgtggttaaaggtaacacctttcctctaatttatcaagtttttgtgttcgtatt 48634371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 156 - 648
Target Start/End: Complemental strand, 33852792 - 33852307
Alignment:
Q  156 gtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtcca 255  Q
    ||||| ||| ||||| ||||||||||||||||||||  | |||| | ||||||||||||||||| | |||||  || || |||||||| |||||||||||    
T  33852792 gtgaatcattaaatttgtccttgaatttttacgggttggtcaaatttatccctcaattatgcgaaatatcaatttaatttctgaatttatcagacgtcca 33852693  T
Q  256 ttaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgt 354  Q
    | ||||||||||||| ||| |||||||| |||||||||| |||  |||||||| ||||| |||| ||||||||| || |||||| ||| |||||||||||    
T  33852692 tcaaaaaggtccctctgtccaagtgctccgttagccatggtgacatgtcgccctgcatgttgtgttgtcttgtagacgtggcaagaaggaagccacgtgt 33852593  T
Q  355 tcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnnatgttattccaattttgcccctatattacccatacctccttcc 454  Q
    ||| ||||||||||||| ||| | |||||| |||| |||||||||   ||        || | |||| |||||||| ||  ||||||||||||||||       
T  33852592 tcaaggactaatttgattgaattggaaaaaatccaattttcactt---aatttttttctgcttttcccattttgccactgcattacccatacctcct--- 33852499  T
Q  455 tcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccgg 554  Q
    |||||||||| ||||||||||       | ||| ||||  ||| |||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  33852498 tcacatttcagtcagaaacat-aaaaaacatccttgacttttcacctttccgctaaaactttctccattctcacccctccaaaatcatcatcatcaccgg 33852400  T
Q  555 cgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcaccct 648  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||||||||| ||||||   | |||||||||  || ||||||| ||||||||||    
T  33852399 cgattctgacgtttttgaagtttctgtgtt-ggctgtgattaaaggtaacgcctttcaggttgtttatcaagattttgtgttcgtattcaccct 33852307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 154 - 586
Target Start/End: Complemental strand, 2977453 - 2977017
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||| ||||||||| |||||||||||||||||  || |||||| |||||||| |||||||||| | |||||   ||| ||| ||||||||| |||||    
T  2977453 gagtgaatcatcaaattcgtccttgaatttttacgaatcggccaaattcatcccttaattatgcgaaatatcaattcagtccctaaatttgtcatacgtc 2977354  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||| |||| | |||||||| |||||| ||| |||| |||||||| ||||||| || |||||  ||||| |||||| ||| || |||| |    
T  2977353 catcaaaaaggtccatccgcccaagtgctccgttagcgatgctgatttgtcgccctgcatgctatgttgtctaatacacgtggcaagaaggaaaccacat 2977254  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttca----annnnnnnatgttattccaattttgcccctatattacccatacct 448  Q
    ||||| |||||||||||||||||||  |||||||||| |||| ||||||||    |       ||||| |||||||||||||||| |||||| |||||||    
T  2977253 gttcaaggactaatttgatggaagtgaaaaaattccaattttgacttttcagtttaattttttatgttcttccaattttgcccctgtattactcatacct 2977154  T
Q  449 ccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcat 548  Q
    |||||||||||||||||||||||||||        || | |||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  2977153 ccttcctcacatttcactcagaaacatcaaaaat-gttcgtgacccttcttcttcccgcaaaaaccttctccattctcacctctccaaaatcatcatcat 2977055  T
Q  549 ctccggcgattctcacgtttttgaagtttctgtgttcg 586  Q
    |||||| ||| |||  |||||| ||||| || ||||||    
T  2977054 ctccggtgatcctctagtttttcaagttgctttgttcg 2977017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 154 - 581
Target Start/End: Complemental strand, 24383017 - 24382583
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||| |||||| ||||||||| || | |||||| |||| | || ||||||||||||||    
T  24383017 gagtgaaccatcaaattggtccttgaatttttacgggtcggccaaattcatccttcaattatgagaaatatcaacttagtccatggatttgtcagacgtc 24382918  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||||||||| |||||  || |||||||||| |||| |||||||| ||||| |||| |||||| || ||  ||||||||| |||||||||    
T  24382917 catcaaaaaggtccctccgtccaagtcatccgttagccatgctgatatgtcgccctgcatgttgtgttgtcttatatacggggcaaaaaggaagccacgt 24382818  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttca-------annnnnnnatgttattccaattttgcccctatattacccata 445  Q
    ||||| ||||||||||||| ||| | |||||| | ||||||||||||||||                || | || | |||||||||||  ||||||||||    
T  24382817 gttcaaggactaatttgattgaattggaaaaagttcagttttcacttttcagtttattttttctttctgctttttccattttgcccctgcattacccata 24382718  T
Q  446 cctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcat 545  Q
    |||||||| |||||||||||||||||||||       ||||  || | |||||||||||||||||||| ||||||||| ||||| || ||||||||||||    
T  24382717 cctccttcttcacatttcactcagaaacat-aaaaaacgtcattgtctcttctccttcccgctaaaacattctccattttcaccccttcaaaatcatcat 24382619  T
Q  546 catctccggcgattctcacgtttttgaagtttctgt 581  Q
    |||||||| |||||||||||||||| ||||||||||    
T  24382618 catctccgacgattctcacgtttttaaagtttctgt 24382583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 154 - 611
Target Start/End: Complemental strand, 45257344 - 45256888
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| || |||||||||| ||||||| |||||| ||||||||||||||||  | | |||||| ||||||||||||||||||||||||    
T  45257344 gagtgaaccatcaaattcgttcttgaattttcacgggtcggccaaattcatccctcaattatgtaaaatatcaacttagttcctgaatttgtcagacgtc 45257245  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| ||||| |||||||||| ||||||||| ||||| |||| |||  || ||||| ||||| |||| |||||||||||| |||||| ||  |||||||||    
T  45257244 cataaaaaatgtccctccgtccaagtgctccgttagtcatgctgacatgccgccctgcatgttgtgttgtcttgtacacgtggcaagaatgaagccacgt 45257145  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttca----annnnnnnatgttattccaattttgcccctatattacccatacct 448  Q
    ||||| ||||||||||||| ||| | |||||| ||||||||||||||||||    |        || | | || |||||||||||  ||||||||||| |    
T  45257144 gttcaaggactaatttgattgaattggaaaaagtccagttttcacttttcactttatttttttctgctttccccattttgcccctgcattacccatacat 45257045  T
Q  449 ccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcat 548  Q
    |||   |||||||| | ||| ||||||       | ||| ||||| ||  |||| |||||||||||||||||||||||||| |||||||||||||||| |    
T  45257044 cct---tcacattttagtca-aaacat-caaaaacatccttgaccttttacctttccgctaaaactttctccattctcacccctccaaaatcatcatc-t 45256951  T
Q  549 ctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttc 611  Q
    | | ||||||||| ||||||||||||||||| |||||||||||| ||||||||||| ||||||    
T  45256950 cactggcgattctgacgtttttgaagtttctatgttcggctgtgattaaaggtaacgcctttc 45256888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 154 - 639
Target Start/End: Complemental strand, 41021127 - 41020637
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| |||| |||||||| ||| ||| |||||| |  |||||||||||||||| |  ||||  |  | |||||||||||||||||||    
T  41021127 gagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaaattagtccctcaattatgcgaaatttcaatttcatccctgaatttgtcagacgtc 41021028  T
Q  254 cattaaaaaggtccctccgtcaa-gtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||||||||| || | |||| |||||||||| |||  |||||||  |||||||||| |||| ||||| | |||||| ||| |||||||||    
T  41021027 catcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctggcatgctgtgctgtcctgtacgcgtggcaagaaggaagccacgt 41020928  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnnatgt-----tattccaattttgcccctatattacccatacc 447  Q
    ||||| |||| |||||||| ||  | |||||| | || |||||| |||||||        | |     | |||| |||||||||||  |||||  ||  |    
T  41020927 gttcagggacgaatttgattgatttggaaaaagttcacttttcatttttcaatttaattttttcgtgcttttcccattttgcccctgcattacatatttc 41020828  T
Q  448 tccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatca 547  Q
    | |||| |||||||| ||||||||||||       | ||| |||| |||||||||||||||||||| ||||||||| ||||| |||||||||||||||||    
T  41020827 ttcttcttcacattttactcagaaacatcaaaaa-catccttgactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcatca 41020729  T
Q  548 tctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcat 639  Q
    |||||  |||||||  ||| ||||||||| ||||||||| | ||| | |||||||||||||||||||  |||||||||  || |||||||||    
T  41020728 tctccatcgattctggcgtgtttgaagttcctgtgttcgaccgtgatcaaaggtaacacctttccttgtgtttatcaagattctgtgttcat 41020637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 237 - 534
Target Start/End: Original strand, 1845867 - 1846170
Alignment:
Q  237 tgaatttgtcagacgtccattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatgg 335  Q
    |||||||| ||||||||||| ||||| ||||||||||| |||||||| |||| |||||||||| |||||||| ||||| ||||||||| | ||||| |||    
T  1845867 tgaatttgacagacgtccatcaaaaacgtccctccgtccaagtgctccgttaaccatgttgatatgtcgccctgcatgatgtgatgtcctatacacgtgg 1845966  T
Q  336 caaaaagaaagccacgtgttcacggactaatttgatggaag-ttgaaaaattccagttttcactt-----ttcaannnnnnnatgttattccaattttgc 429  Q
    ||||||| |||||||||||||| |||||||||||| ||||| | ||||||||| |||||||||||     || |        || || ||||||||||||    
T  1845967 caaaaaggaagccacgtgttcaaggactaatttgaaggaagatggaaaaattcaagttttcactttttagtttattttttttatatttttccaattttgc 1846066  T
Q  430 ccctatattacccatacctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacc 529  Q
    |||| ||||||||||| ||| |||||||||||||| || |||||||        |||  ||||||||||| |||||||||||| |||||||||||| |||    
T  1846067 ccctgtattacccatatctcattcctcacatttcagtctgaaacatcaactta-gtctttgacccttctctttcccgctaaaattttctccattctgacc 1846165  T
Q  530 tctcc 534  Q
    |||||    
T  1846166 tctcc 1846170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 483 - 648
Target Start/End: Complemental strand, 45898173 - 45898008
Alignment:
Q  483 cgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggcgattctcacgtttttgaagtttctgtg 582  Q
    ||||| |||||||||| |||| ||||||||||| ||||||| ||||| |||||||| |||||||||||||||||||||| || |||||||||||| ||||    
T  45898173 cgtccttgacccttcttcttctcgctaaaacttcctccattttcacccctccaaaaacatcatcatctccggcgattctgacatttttgaagtttgtgtg 45898074  T
Q  583 ttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcaccct 648  Q
    ||||| |||| ||||||||||||| |||||| | ||||||||| ||| ||||||| ||||||||||    
T  45898073 ttcggttgtgattaaaggtaacacatttcctgttgtttatcaagtttttgtgttcgtattcaccct 45898008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 153 - 403
Target Start/End: Complemental strand, 23888897 - 23888646
Alignment:
Q  153 cgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgt 252  Q
    |||||||||||||||||| |||| |||||||| ||  ||| |||||  || |||||||||||||||| | |||| | |||| ||||||||||||| ||||    
T  23888897 cgagtgaaccatcaaattcgtccctgaattttcacacgtcggccaacttcgtccctcaattatgcgaaatatcagcttagtccctgaatttgtcaaacgt 23888798  T
Q  253 ccattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacg 351  Q
    |||| |||||||||||||||| ||| | ||| ||||||| || ||||||||||||  |||| ||||| |||||||||| | |||||| ||| |||||||     
T  23888797 ccatcaaaaaggtccctccgtccaaatcctccgttagccttgctgatctgtcgccttgcatactgtgttgtcttgtacgcgtggcaagaaggaagccaca 23888698  T
Q  352 tgttcacggactaatttgatggaagttgaaaaattccagttttcacttttca 403  Q
    |||||| ||||||||||||| ||| | |||||  |  |||||||||||||||    
T  23888697 tgttcagggactaatttgattgaattggaaaatgttgagttttcacttttca 23888646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 154 - 331
Target Start/End: Complemental strand, 40509035 - 40508857
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| ||||||||||||| ||||||| |||||| || |||||||||||||||| | |||||| || | | |||||||||||||||||    
T  40509035 gagtgaaccatcaaattcgtccttgaattttcacgggtcggccaaattcgtccctcaattatgcgaaatatcaacttaatccttgaatttgtcagacgtc 40508936  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacac 331  Q
    ||| ||||| |||||||||| |||||| || ||||| | || ||||||||||||| ||||| |||| |||| |||||||    
T  40508935 catcaaaaatgtccctccgtccaagtgttccgttagtcgtgctgatctgtcgccctgcatgttgtgttgtcatgtacac 40508857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 154 - 330
Target Start/End: Complemental strand, 39641963 - 39641786
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||| | |   |||||| |||| | | ||||||||||||||     
T  39641963 gagtgaaccatcaaatttgtccttgaatttttacgggtcggccaaattcatctctcaattattcaaagtatcaacttagtccttaaatttgtcagacgtt 39641864  T
Q  254 cattaaaaaggtccctccg-tcaagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtaca 330  Q
    ||| ||||||||||||||| |||||| ||| |||||||||||||||||  || || ||||| |||| |||||| ||||    
T  39641863 cataaaaaaggtccctccgttcaagtactccgttagccatgttgatctaccgtcctgcatgttgtgttgtcttataca 39641786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 489 - 610
Target Start/End: Complemental strand, 23888563 - 23888442
Alignment:
Q  489 tgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggcgattctcacgtttttgaagtttctgtgttcggc 588  Q
    |||||||||| |||| ||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||||||| || ||||| |||||| |||||||||     
T  23888563 tgacccttcttcttctcgctaaaacttcctccattttcacccctccaaaatcatcatcatctccgacgattctgacattttttaagtttgtgtgttcggt 23888464  T
Q  589 tgtggttaaaggtaacaccttt 610  Q
    |||| ||||||||||| |||||    
T  23888463 tgtgattaaaggtaacgccttt 23888442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 152 - 367
Target Start/End: Complemental strand, 51454376 - 51454156
Alignment:
Q  152 tcgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacg 251  Q
    ||||||||||||||||||| ||||||||||||| |||| || |||||| |||| |||||||||||||| | |||||  ||||   ||||||||||| ||     
T  51454376 tcgagtgaaccatcaaattcgtccttgaattttcacggatcggccaaattcattcctcaattatgcgaaatatcaaattagtctttgaatttgtcaaaca 51454277  T
Q  252 tccattaaaaaggtccctccgt-caagtgctctgttagccatgtt----gatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaag 346  Q
    ||||| ||||| ||||||| || |||||| || ||||||||||||     || |||| ||| ||||| |||| |||||| ||||| |||||| ||| | |    
T  51454276 tccataaaaaatgtccctctgtccaagtgatccgttagccatgttcatatatatgtccccctgcatgatgtgttgtcttatacacgtggcaagaaggagg 51454177  T
Q  347 ccacgtgttcacggactaatt 367  Q
    ||||||||||| |||||||||    
T  51454176 ccacgtgttcaaggactaatt 51454156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 35424551 - 35424692
Alignment:
Q  17 aacttagtgtgtgtttaggaacgagttttcaatgactaaactgggttttactttttca-----------------ttccagcttgtttgggtgaatgaaa 99  Q
    |||||||||||||||| ||||||||||||||||| | ||||||| |||||||||||||                 |||||||||||||||||||||||||    
T  35424551 aacttagtgtgtgtttgggaacgagttttcaatggccaaactggcttttactttttcaaaccacgtttttagatattccagcttgtttgggtgaatgaaa 35424650  T
Q  100 agcactttcaaaaaactcagttttaagaccaaaatgttggta 141  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  35424651 agcactttcaaaaaactcagttttgagaccaaaacgttggta 35424692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 483 - 557
Target Start/End: Original strand, 54093022 - 54093096
Alignment:
Q  483 cgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggcga 557  Q
    ||||| ||||| ||||||||||||||||||| |||  |||| |||||||||||||||||||||||||||||||||    
T  54093022 cgtccatgacctttctccttcccgctaaaaccttcatcattttcacctctccaaaatcatcatcatctccggcga 54093096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 154 - 301
Target Start/End: Complemental strand, 45898472 - 45898324
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| |||| |||||||| ||  |||  ||||  |  ||||| |||||||||| | |||||| |||| | |||||||||||||||||    
T  45898472 gagtgaaccatcaaattcgtccctgaattttcacacgtcgaccaactttgtccctgaattatgcgaaatatcaacttagtccttgaatttgtcagacgtc 45898373  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctg 301  Q
     || |||||||||||||||| ||||| ||| ||||||| || |||||||    
T  45898372 tatcaaaaaggtccctccgtccaagtcctccgttagccttgctgatctg 45898324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 487 - 555
Target Start/End: Complemental strand, 26449084 - 26449016
Alignment:
Q  487 cctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggc 555  Q
    ||||||| |||||||| |||||||||| ||| ||||  |||||||||||||||||||||||||||||||    
T  26449084 cctgacctttctcctttccgctaaaaccttcaccatcttcacctctccaaaatcatcatcatctccggc 26449016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 1847736 - 1847645
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    ||||||| ||||||||| ||||||||||||| ||||||| |||||| ||||||||||||||||| | | |||||  || | |||||||||||    
T  1847736 gagtgaatcatcaaatttgtccttgaattttcacgggtcggccaaattcatccctcaattatgcaaaatatcaatttaatccctgaatttgt 1847645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 30812348 - 30812286
Alignment:
Q  78 cagcttgtttgggtgaatgaaaagcactttcaaaaaactcagttttaagaccaaaatgttggta 141  Q
    ||||||||||||||||||||||||||| ||| ||||||| |||||||||| ||||||| |||||    
T  30812348 cagcttgtttgggtgaatgaaaagcac-ttccaaaaacttagttttaagatcaaaatgctggta 30812286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 45897050 - 45897141
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    ||||||| |||||| || ||||||||||||||||||||| |||||  || |||||||||||||||| | |||||  || | |||||||||||    
T  45897050 gagtgaatcatcaacttcgtccttgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgt 45897141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 164 - 403
Target Start/End: Complemental strand, 30600052 - 30599811
Alignment:
Q  164 tcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtccattaaaaag 263  Q
    ||||||| |||||| |||||||||   || |||||| |  ||||| |||| ||||| | ||| |  |||| |||||||||   ||||||| || |||| |    
T  30600052 tcaaattcgtccttaaatttttacaaatcggccaaatttgtccctgaattttgcgaaatatctatttagtccctgaattttagagacgtcgatcaaaatg 30599953  T
Q  264 gtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggac 362  Q
    ||||||||||| ||  ||||||||||   || |||| ||||  |  |||||||||| ||||||||||||||| ||| |||  |||||||||| || ||||    
T  30599952 gtccctccgtccaaaagctctgttagtggtgatgatgtgtcctcttgcatgctgtgttgtcttgtacacatgtcaataaggcagccacgtgtacaaggac 30599853  T
Q  363 taatttgatggaagttg-aaaaattccagttttcacttttca 403  Q
    ||| ||||||||| | | |||||||| || ||| ||||||||    
T  30599852 taaattgatggaaatggtaaaaattcgagatttaacttttca 30599811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 2975460 - 2975551
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    ||||||| || |||||| |||||||||||||||||| || || ||| |||||||||||| |||||| | |||||  || | |||||||||||    
T  2975460 gagtgaatcaccaaattcgtccttgaatttttacggatcagctaaattcatccctcaatgatgcgaaatatcaatttaatccctgaatttgt 2975551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 24381762 - 24381809
Alignment:
Q  172 gtccttgaatttttacgggtctgccaaaatcatccctcaattatgcga 219  Q
    |||||||||||||||||| || |||||| |||||||||||||||||||    
T  24381762 gtccttgaatttttacggatcggccaaattcatccctcaattatgcga 24381809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 51454112 - 51454059
Alignment:
Q  418 ttccaattttgcccctatattacccatacctccttcctcacatttcactcagaa 471  Q
    |||| |||||||||||  ||||| |||||||||||| |||||||||||||||||    
T  51454112 ttcccattttgcccctgcattacacatacctccttcttcacatttcactcagaa 51454059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 23887198 - 23887289
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    ||||||| |||||| || ||||||||||||||| ||||| || ||  || |||||||||||||||| | |||||  || | |||||||||||    
T  23887198 gagtgaatcatcaacttcgtccttgaatttttatgggtcggctaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgt 23887289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 33111841 - 33111932
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    ||||||| |||||| || |||| |||||||| |||| || | |||| ||||||||||||||||||| | |||||  || | |||||||||||    
T  33111841 gagtgaatcatcaacttcgtccctgaattttcacggctcggtcaaattcatccctcaattatgcgaaatatcaatttaatccctgaatttgt 33111932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 2226141 - 2226075
Alignment:
Q  309 gcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaa 375  Q
    |||||||||| |||||||||||| || ||| |||  |||||||||| || ||||||| |||||||||    
T  2226141 gcatgctgtgttgtcttgtacacgtgtcaacaaggtagccacgtgtacaaggactaaattgatggaa 2226075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 464
Target Start/End: Complemental strand, 45898232 - 45898186
Alignment:
Q  418 ttccaattttgcccctatattacccatacctccttcctcacatttca 464  Q
    |||| |||||||||||  |||||||||||||||||| ||||||||||    
T  45898232 ttcccattttgcccctgcattacccatacctccttcttcacatttca 45898186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 31885531 - 31885608
Alignment:
Q  167 aattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttg 244  Q
    |||| ||||||| ||||||||||||| | |||| |||||||| |||||||||| | |||||  |||| | ||||||||    
T  31885531 aattcgtccttggatttttacgggtcggtcaaattcatcccttaattatgcgaaatatcaatttagtacttgaatttg 31885608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 40998515 - 40998580
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcga 219  Q
    |||||||||||||| ||||||| |||||||| ||| ||| | |||| |  ||||||||||||||||    
T  40998515 gagtgaaccatcaagttagtccctgaattttcacgcgtcggtcaaattagtccctcaattatgcga 40998580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 8426604 - 8426552
Alignment:
Q  81 cttgtttgggtgaatgaaaagcactttcaaaaaactcagttttaagaccaaaa 133  Q
    ||||||| | |||||||||||| ||| |||||||||||||||| ||| |||||    
T  8426604 cttgttttgatgaatgaaaagcgcttccaaaaaactcagttttgagatcaaaa 8426552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 418 - 462
Target Start/End: Complemental strand, 40508783 - 40508739
Alignment:
Q  418 ttccaattttgcccctatattacccatacctccttcctcacattt 462  Q
    |||| |||||||||||  ||||||||||| |||||||||||||||    
T  40508783 ttcccattttgcccctgcattacccatacttccttcctcacattt 40508739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 46197796 - 46197840
Alignment:
Q  230 tagttcctgaatttgtcagacgtccattaaaaaggtccctccgtc 274  Q
    ||||||||||||||  |||||||||||||||| ||||||| ||||    
T  46197796 tagttcctgaattttacagacgtccattaaaatggtcccttcgtc 46197840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 153 - 650
Target Start/End: Complemental strand, 18184068 - 18183573
Alignment:
Q  153 cgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgt 252  Q
    |||||||||||||||||| ||| |||||||||||||| || |||||||||||||||||||||||||| | |||||| |||| ||||||||||||||||||    
T  18184068 cgagtgaaccatcaaattcgtctttgaatttttacggttcggccaaaatcatccctcaattatgcgaaatatcaacttagtccctgaatttgtcagacgt 18183969  T
Q  253 ccattaaaaaggtccctccgtcaagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    |||| ||||| |||||| | |||||||||| |||||||||| |||| ||||| |||||||| |||| |||||||||||| |||||||||  |||||||||    
T  18183968 ccatcaaaaatgtcccttcatcaagtgctccgttagccatgctgatttgtcgtccagcatgttgtgttgtcttgtacacgtggcaaaaaagaagccacgt 18183869  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnnatgttattccaattttgcccctatattacccatacctcctt 452  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||       |||||||||||||||||||| | ||||||||||||||||||    
T  18183868 gttcaaggactaatttgatggaagtggaaaaattccagttttcacttttcaa-ttttttatgttattccaattttgcccatgtattacccatacctcctt 18183770  T
Q  453 cctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctcc 552  Q
    ||| |||||||||||||||||||       ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18183769 ccttacatttcactcagaaacat-caaaaacgtcattgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctcc 18183671  T
Q  553 ggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcacccttt 650  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||    
T  18183670 ggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctctagtttatcaagtttctgtgttcgtattcacccttt 18183573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 154 - 645
Target Start/End: Original strand, 42134482 - 42134975
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| |||| |||||||||||||||||||    
T  42134482 gagtgaaccatcaaattcgtccttgaatttttacgggtcggccaaaatcatccctcaattatgcgaaatatcaacttagtccctgaatttgtcagacgtc 42134581  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||||||||| ||||||||| ||||||||||||||  |||| ||| |||||||||| |||||||||||| |||||| ||| ||||||| |    
T  42134582 catcaaaaaggtccctccgtccaagtgctccgttagccatgttgacatgtcaccctgcatgctgtgttgtcttgtacacgtggcaagaaggaagccacat 42134681  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttca--annnnnnnatgttattccaattttgcccctatattacccatacctcc 450  Q
    ||||| ||||||||||||| ||| | |||||| ||||||||||||||||||           || | |||| ||||||||||   ||||||||||||||     
T  42134682 gttcaaggactaatttgattgaattggaaaaagtccagttttcacttttcactttttttttctgcttttcccattttgccccggcattacccatacctct 42134781  T
Q  451 ttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatct 550  Q
    ||| |||||||||| ||||||||||       | ||| ||||| |||  ||| |||||||||||||||||||||||||| ||||||||||||||| |||     
T  42134782 ttcttcacatttcagtcagaaacat-caaaaacatccttgacctttcatctttccgctaaaactttctccattctcacccctccaaaatcatcataatca 42134880  T
Q  551 ccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcac 645  Q
     |||||||||| ||||||||||||||| ||||||||| |||| ||||||||||||||||||   | |||||||||  || ||||||| |||||||    
T  42134881 tcggcgattctgacgtttttgaagtttatgtgttcggatgtgattaaaggtaacacctttcaggttgtttatcaagattctgtgttcgtattcac 42134975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 172 - 610
Target Start/End: Complemental strand, 45381090 - 45380646
Alignment:
Q  172 gtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtccattaaaaaggtccctcc 271  Q
    |||||| ||||||||||||   | |||| ||||||||||||||||||| | |||||| |||||| |||||||||||||||||||| |||||||| |||||    
T  45381090 gtccttaaatttttacgggaaggtcaaattcatccctcaattatgcgaaatatcaacttagttcatgaatttgtcagacgtccatcaaaaaggttcctcc 45380991  T
Q  272 gtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttga 370  Q
    ||| |||||||| |||||||||| |||  |||||||| |||||||||| |||||||||||| |||||| ||| |||||||||||||| ||||||||||||    
T  45380990 gtccaagtgctccgttagccatggtgacatgtcgccctgcatgctgtgttgtcttgtacacgtggcaagaaggaagccacgtgttcaaggactaatttga 45380891  T
Q  371 tggaagttgaaaaattccagttttcacttttc-----aannnnnnnatgttattccaattttgcccctatattacccatacct-ccttcctcacatttca 464  Q
    | ||| | |||||| |||| ||||||||||||     |         || | |||| ||||||||     |||||| |||||| ||||| ||||||||||    
T  45380890 ttgaattggaaaaagtccaattttcacttttcactttattttttttctgcttttcccattttgccatagcattaccgatacctcccttcttcacatttca 45380791  T
Q  465 ctcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggcgattctcac 564  Q
     ||||||||||       | ||| ||||| ||| | || |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||    
T  45380790 gtcagaaacat-caaaaacatccttgacctttcacatttccgctaaaactttctccattctcacccctccaaaatcatcatcatcaccggcgattctgac 45380692  T
Q  565 gtttttgaagtttctgtgttcggctgtggttaaaggtaacaccttt 610  Q
    ||||||||||||| |||||||||||||| ||||||||||| |||||    
T  45380691 gtttttgaagtttatgtgttcggctgtgattaaaggtaacgccttt 45380646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 154 - 648
Target Start/End: Complemental strand, 35480099 - 35479596
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    |||||||||||||| || ||||||||||||| |||| || |||||| ||||||||||||||||||| | |||||| || |   |||||||||||||||||    
T  35480099 gagtgaaccatcaacttcgtccttgaattttcacggatcagccaaattcatccctcaattatgcgaaatatcaacttaatctatgaatttgtcagacgtc 35480000  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||| |||||| ||||||||||||||| ||| ||||||||||||  ||||||| || |||||||||| | |||||| ||  |||||||||    
T  35479999 catcaaaaaggtccttccgtccaagtgctctgttagc-atgctgatctgtcgccatgcatgctttgttgtcttgtacgcgtggcaagaaagaagccacgt 35479901  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttca---------annnnnnnatgttattccaattttgcccctatattaccca 443  Q
    ||||| ||||||||||||| ||| |||||||| | || |||||||||||||                  || | || | |||||||||||| ||||||||    
T  35479900 gttcagggactaatttgattgaatttgaaaaagttcaattttcacttttcagttttttttttttctttctgctttttccattttgcccctacattaccca 35479801  T
Q  444 tacctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatc 543  Q
    ||| |||||| ||| |||||| ||||||| ||       ||||| ||||||||||||||||| |||||||||| | ||||||| ||||||||||||||||    
T  35479800 tacatccttcttcatatttcagtcagaaaaat-aaaaaacgtccttgacccttctccttcccactaaaactttattcattctcgcctctccaaaatcatc 35479702  T
Q  544 atcatctccggcgattctcacgtttttgaagtttctgtgttcggctgtggtt---aaaggtaacacctttcctttagtttatcaaatttatgtgttcata 640  Q
    ||||||| || ||||||| | ||||||||||||||||| ||||| |||  ||   ||||||||| |||||||| | ||||||||| ||||||||||| ||    
T  35479701 atcatcttcgacgattctgatgtttttgaagtttctgtattcggttgt--ttcaaaaaggtaacgcctttcctgttgtttatcaagtttatgtgttcgta 35479604  T
Q  641 ttcaccct 648  Q
    ||||||||    
T  35479603 ttcaccct 35479596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 154 - 648
Target Start/End: Complemental strand, 36895634 - 36895142
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| |||| |||||||| ||| ||| | |||  || ||| |||||||||||| | |||||| |||| |||||||||||||||||||    
T  36895634 gagtgaaccatcaaatttgtccctgaattttcacgcgtcggtcaacttcgtccatcaattatgcgaaatatcaacttagtccctgaatttgtcagacgtc 36895535  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||||| ||| ||||||||| |||||||||| |||||||||| |  ||||| |||| |||||||||| | |||||| ||| |||||||||    
T  36895534 catcaaaaaggtcccttcgtccaagtgctccgttagccatgctgatctgtcgtcttgcatgttgtgttgtcttgtacgcgtggcaagaaggaagccacgt 36895435  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaa---nnnnnnnatgttattccaattttgcccctatattacccatacctc 449  Q
    ||||| |||| |||||||| ||| | |||||  |  ||||||||||||||||           || | |||| |||||||||||  ||||||||||||||    
T  36895434 gttcagggacgaatttgattgaattggaaaatgttgagttttcacttttcaatttattttttctgcttttcccattttgcccctgcattacccatacctc 36895335  T
Q  450 cttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatc 549  Q
    |||| |||||||||||     |||||       ||||  ||| |||||| |||| ||||||||||  ||||||| ||| | |||||||||||||||||||    
T  36895334 cttcttcacatttcac-----aacat-caaaaacgtcattgatccttcttcttctcgctaaaactacctccattttcatccctccaaaatcatcatcatc 36895241  T
Q  550 tccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcaccct 648  Q
    |||| ||||||| ||  ||||||||||| | |||||||||||| ||||||||| |||||||||| | ||||||||| ||| ||||||| ||||||||||    
T  36895240 tccgacgattctgacagttttgaagtttgtttgttcggctgtgattaaaggtagcacctttcctgttgtttatcaagtttttgtgttcgtattcaccct 36895142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 204 - 648
Target Start/End: Original strand, 31801683 - 31802126
Alignment:
Q  204 tccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtccattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgt 302  Q
    |||||||||||||||| | |||||| |||| | | ||||||| |||||||||| ||||||||||||||||| |||||||| |||||||||| |||| |||    
T  31801683 tccctcaattatgcgaaatatcaacttagtccttaaatttgtgagacgtccatcaaaaaggtccctccgtccaagtgctccgttagccatgctgatttgt 31801782  T
Q  303 cgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaagttgaaaaattccagttttcacttttc 402  Q
    || |  ||||| |||| |||||||||| | |||||| ||| ||| |||||||||| |||| |||||||| ||| | |||||  |  ||||||||||||||    
T  31801783 cgtcttgcatgttgtgttgtcttgtacgcgtggcaagaaggaagtcacgtgttcagggacgaatttgattgaattggaaaatgttgagttttcacttttc 31801882  T
Q  403 a----annnnnnnatgttattccaattttgcccctatattacccatacctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttct 498  Q
    |    |        || | |||  |||||||| ||  ||||||||||||| |||| ||||||||||      |||||       ||||  ||||||||||    
T  31801883 agtttatttttttctgcttttctcattttgcctctgcattacccatacctacttcttcacatttcag-----aacatcaaaaa-cgtcattgacccttct 31801976  T
Q  499 ccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaa 598  Q
     |||| ||||||||||| ||||| | ||||  ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||| |||||    
T  31801977 tcttctcgctaaaacttcctccactttcactcctccaaaatcatcatcatctccggcgattctgacatttttgaagtttgtgtgttcggctgtgattaaa 31802076  T
Q  599 ggtaacacctttcctttagtttatcaaatttatgtgttcatattcaccct 648  Q
    ||||||||||||||| | ||||||||| ||| ||||||| ||||||||||    
T  31802077 ggtaacacctttcctgttgtttatcaagtttttgtgttcgtattcaccct 31802126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 154 - 403
Target Start/End: Complemental strand, 46638931 - 46638681
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| || | |||||||| ||| ||| |||||  ||||||||||||||||||| | |||||| |||| | |||||||||||||||||    
T  46638931 gagtgaaccatcaaattcgttcctgaattttcacgcgtcggccaacttcatccctcaattatgcgaaatatcaacttagtccttgaatttgtcagacgtc 46638832  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||  |||||||||||||||| ||||||||| |||||||||| ||||||||||||  ||||| |||| |||||||||| | |||||||||| |||||||||    
T  46638831 caccaaaaaggtccctccgtccaagtgctccgttagccatgctgatctgtcgccttgcatgttgtgttgtcttgtacgcgtggcaaaaaggaagccacgt 46638732  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttca 403  Q
    ||||| |||| |||||||| ||| | |||||  |  |||||||||||||||    
T  46638731 gttcagggacgaatttgattgaattggaaaatgttgagttttcacttttca 46638681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 154 - 403
Target Start/End: Original strand, 44157433 - 44157682
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||| | |||||| |||||| ||||||| |||||| ||||||||||||||||| | | |||||| |||| ||||||||||| |||||||    
T  44157433 gagtgaaccatcaaactcgtccttaaattttcacgggtcggccaaattcatccctcaattatgcaaaatatcaacttagtccctgaatttgttagacgtc 44157532  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| ||||| |||| |||||| |||||||| || ||||||  |||  |||||||| ||||| |||| |||||||||||| |||||| ||| |||||||||    
T  44157533 cataaaaaaagtccttccgtctaagtgctccgtcagccatagtgacatgtcgccctgcatgttgtgttgtcttgtacacgtggcaagaaggaagccacgt 44157632  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttca 403  Q
    |||||  |||||||||||| ||| | |||||| | ||||||||||||||||    
T  44157633 gttca-agactaatttgattgaattggaaaaagttcagttttcacttttca 44157682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 154 - 625
Target Start/End: Complemental strand, 47269580 - 47269104
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| |||| |||||||| ||| ||| |||||| |  |||||||||||| ||| |  ||||  |  | ||||||||||||| |||||    
T  47269580 gagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaaattagtccctcaattatacgaaatttcaatttcatccctgaatttgtcaaacgtc 47269481  T
Q  254 cattaaaaaggtccctccgtcaa-gtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||||||||| || | |||| |||||||||| |||  ||||| |  ||||| |||| |||| ||||| | |||||| ||| |||||||||    
T  47269480 catcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgtctggcatggtgtgctgtcctgtacgcgtggcaagaaggaagccacgt 47269381  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnnatgt-----tattccaattttgcccctatattacccatacc 447  Q
    ||||| |||| |||||||| ||  | |||||| | || |||||| |||||||        | |     | |||| |||||||||||  |||||  || ||    
T  47269380 gttcagggacgaatttgattgatttggaaaaagttcacttttcatttttcaatttaattttttcgtgcttttcccattttgcccctgcattacatattcc 47269281  T
Q  448 tccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatca 547  Q
    | |||| |||||||| |||||||| |||       | ||| |||| |||||||||||||||||||| ||||||||| ||||| ||||||||||||| |||    
T  47269280 ttcttcttcacattttactcagaaccatcaaaaa-catccttgactcttctccttcccgctaaaacgttctccattttcacccctccaaaatcatcctca 47269182  T
Q  548 tctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaa 625  Q
    |||||  |||||||  ||| ||||||||| ||||||||| | ||| | |||||||||||||||||||| |||||||||    
T  47269181 tctccatcgattctggcgtgtttgaagttcctgtgttcgaccgtgatcaaaggtaacacctttccttttgtttatcaa 47269104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 436 - 648
Target Start/End: Original strand, 6575454 - 6575666
Alignment:
Q  436 attacccatacctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctcca 535  Q
    |||||||||||||||||| |||||||||| | ||||| ||       ||||| ||||||||||||||||| |||||||||| |||||||||||| |||||    
T  6575454 attacccatacctccttcttcacatttcagttagaaaaataaaaaa-cgtccttgacccttctccttcccactaaaactttatccattctcacccctcca 6575552  T
Q  536 aaatcatcatcatctccggcgattctcacgtttttgaagtttctgtgttcggctgtggt-taaaggtaacacctttcctttagtttatcaaatttatgtg 634  Q
    ||||||||||||||||||  |||||| ||||||||||||||| ||||||||| |||  |  ||||||||| | |||||| | ||||||||| ||||||||    
T  6575553 aaatcatcatcatctccgatgattctgacgtttttgaagtttatgtgttcggttgttttaaaaaggtaacgcttttcctgttgtttatcaagtttatgtg 6575652  T
Q  635 ttcatattcaccct 648  Q
    ||| ||||||||||    
T  6575653 ttcgtattcaccct 6575666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 489 - 648
Target Start/End: Complemental strand, 46638597 - 46638438
Alignment:
Q  489 tgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggcgattctcacgtttttgaagtttctgtgttcggc 588  Q
    |||||||||| |||  ||||||||||| ||||||| ||||| |||||||||||||||||||| || ||||||| || |||||||||||| ||||||||||    
T  46638597 tgacccttcttcttttcgctaaaacttcctccattttcacccctccaaaatcatcatcatcttcgacgattctgacatttttgaagtttgtgtgttcggc 46638498  T
Q  589 tgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcaccct 648  Q
    |||| ||||||||||||| |||||| | ||||||||| ||| ||||||| ||||||||||    
T  46638497 tgtgattaaaggtaacacatttcctgttgtttatcaagtttttgtgttcgtattcaccct 46638438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 154 - 401
Target Start/End: Complemental strand, 33685372 - 33685126
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| |||| |||||||||||||||| | |||| ||||||||||||||||||| | |||||  || |   ||||||||||| |  ||    
T  33685372 gagtgaaccatcaaattcgtccctgaatttttacgggtcggtcaaattcatccctcaattatgcgaaatatcaatttaatcattgaatttgtcacatctc 33685273  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||| | ||||||| || |||||||| ||||||||||  ||| |||||||| ||||| || | |||||||||||| |||||| ||| |||||||||    
T  33685272 catcaaaa-gatccctccatccaagtgctccgttagccatgccgatgtgtcgccctgcatgttgagttgtcttgtacacgtggcaagaaggaagccacgt 33685174  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcactttt 401  Q
    ||||| ||||||||||||| ||| | |||||| | | ||||||||||||    
T  33685173 gttcaaggactaatttgattgaattggaaaaagttc-gttttcactttt 33685126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 418 - 648
Target Start/End: Original strand, 44158056 - 44158282
Alignment:
Q  418 ttccaattttgcccctatattacccatacctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttc 517  Q
    |||| |||||||||||  ||||||||||||||||||   |||||||| ||||||||||       | ||| ||||| ||| |||| |  |||||||||||    
T  44158056 ttcccattttgcccctgcattacccatacctccttc---acatttcagtcagaaacatcaaaaa-catccttgacctttcacctttctactaaaactttc 44158151  T
Q  518 tccattctcacctctccaaaatcatcatcatctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttag 617  Q
    ||||||||||||  | |||||||||||||||| ||||||||||| || |||||||||||| |||||||||||||| ||||||||||| ||||||   | |    
T  44158152 tccattctcaccctttcaaaatcatcatcatcaccggcgattctgacttttttgaagtttatgtgttcggctgtgattaaaggtaacgcctttcaggttg 44158251  T
Q  618 tttatcaaatttatgtgttcatattcaccct 648  Q
    ||||||||  || ||||||| ||||||||||    
T  44158252 tttatcaagattttgtgttcgtattcaccct 44158282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 489 - 645
Target Start/End: Complemental strand, 33683004 - 33682857
Alignment:
Q  489 tgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggcgattctcacgtttttgaagtttctgtgttcggc 588  Q
    ||||||||||||||||||||||||||||||||          || |||||||||||||||||||||||||| | |||||||||||||||||||||||| |    
T  33683004 tgacccttctccttcccgctaaaactttctccc---------cttcaaaatcatcatcatctccggcgattatgacgtttttgaagtttctgtgttcgac 33682914  T
Q  589 tgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcac 645  Q
    |||| ||||||||||| |||||||| | ||||||||| ||| ||||||| |||||||    
T  33682913 tgtgattaaaggtaacgcctttcctattgtttatcaagtttctgtgttcgtattcac 33682857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 153 - 404
Target Start/End: Original strand, 27940607 - 27940859
Alignment:
Q  153 cgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgt 252  Q
    ||||||||||||||| ||||||| |||||||| || |||  | |||| || |||||||||||||||| | |||||  || | | ||||||| ||||||||    
T  27940607 cgagtgaaccatcaatttagtccctgaattttcacaggttggtcaaattcgtccctcaattatgcgaaatatcaatttaatccttgaatttatcagacgt 27940706  T
Q  253 ccattaaaaaggtccctccgtcaa-gtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacg 351  Q
    |||| |||||||||||||||| || | |||| |||||||||| |||  |||  ||  ||||| |||| |||||||||| | |||||| ||| ||||||||    
T  27940707 ccatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtaaccttgcatgatgtgctgtcttgtacgcgtggcaagaaggaagccacg 27940806  T
Q  352 tgttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaa 404  Q
    |||||| |||| |||||||| ||  | |||||| | || |||||| |||||||    
T  27940807 tgttcagggacgaatttgattgatttggaaaaagttcacttttcatttttcaa 27940859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 222 - 381
Target Start/End: Original strand, 6575260 - 6575418
Alignment:
Q  222 catcaacctagttcctgaatttgtcagacgtccattaaaaaggtccctccgtcaa-gtgctctgttagccatgttgatctgtcgcccagcatgctgtgat 320  Q
    ||||||| |||| |||||||||||||||| || || |||||||||| |||||||| |||||||||  |||||| |||| ||||| |  ||||||| || |    
T  6575260 catcaacttagtccctgaatttgtcagacatctatcaaaaaggtccttccgtcaaagtgctctgt--gccatgctgatatgtcgtcatgcatgctttgtt 6575357  T
Q  321 gtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaagttgaa 381  Q
    ||||||||| | |||||| ||| |||||||||||||| ||||||||||||| ||| |||||    
T  6575358 gtcttgtacgcgtggcaagaaggaagccacgtgttcaaggactaatttgattgaatttgaa 6575418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 292559 - 292508
Alignment:
Q  82 ttgtttgggtgaatgaaaagcactttcaaaaaactcagttttaagaccaaaa 133  Q
    ||||||||||||||||||||| ||| |||||||||||||||| |||||||||    
T  292559 ttgtttgggtgaatgaaaagcgcttccaaaaaactcagttttgagaccaaaa 292508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 33679258 - 33679324
Alignment:
Q  153 cgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcga 219  Q
    |||||||| |||||| || |||| |||||||||||||||| |||||| || ||||||||||||||||    
T  33679258 cgagtgaatcatcaattttgtccatgaatttttacgggtcagccaaattcgtccctcaattatgcga 33679324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 309 - 403
Target Start/End: Original strand, 15104597 - 15104692
Alignment:
Q  309 gcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaagttg-aaaaattccagttttcacttttca 403  Q
    |||||||||| |||||||||||| || ||| |||  |||||||||| || ||||||||||||||||| | | |||||||| || ||| ||||||||    
T  15104597 gcatgctgtgttgtcttgtacacgtgtcaataaggcagccacgtgtacaaggactaatttgatggaaatggtaaaaattcgagatttaacttttca 15104692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 5783513 - 5783565
Alignment:
Q  323 cttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaa 375  Q
    ||||||||| ||| |||||||||||||||||| || ||||||| |||||||||    
T  5783513 cttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgatggaa 5783565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 5783363 - 5783466
Alignment:
Q  153 cgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgt 252  Q
    ||||||||||||||| || |||| |||||||||| ||||| |||||| ||||| | |||||   ||| | |||||  |||| |||||||||||  |||||    
T  5783363 cgagtgaaccatcaatttcgtccctgaatttttaggggtcggccaaattcatctcccaatttaacgaaatatcaaaatagtccctgaatttgtttgacgt 5783462  T
Q  253 ccat 256  Q
    ||||    
T  5783463 ccat 5783466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 18180500 - 18180591
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    ||||||| | |||| || |||| |||||||| |||  || |||||| ||||||||||||||||||| | |||||  || |||||||||||||    
T  18180500 gagtgaatcctcaactttgtccctgaattttcacgactcggccaaattcatccctcaattatgcgaaatatcaatttaattcctgaatttgt 18180591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 27952583 - 27952500
Alignment:
Q  162 catcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    |||||| ||||||| |||||| | ||||||| |||||| || |||||||||||||||| | |||||  || | |||||||||||    
T  27952583 catcaacttagtccctgaattatcacgggtcggccaaattcgtccctcaattatgcgaaatatcaatttaatccctgaatttgt 27952500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 365
Target Start/End: Original strand, 51121986 - 51122117
Alignment:
Q  235 cctgaatttgtcagacgtccattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacat 333  Q
    ||||||||| ||  |||||||| |||| ||||||||||| |||  | ||||||||  ||||||| ||| | ||| ||||| |||| |||| ||||||| |    
T  51121986 cctgaatttctctcacgtccatcaaaatggtccctccgtccaaaaggtctgttagtgatgttgagctggctccctgcatgttgtgttgtcatgtacacgt 51122085  T
Q  334 ggcaaaaagaaagccacgtgttcacggactaa 365  Q
    | ||||||| ||| ||||||| || |||||||    
T  51122086 gtcaaaaaggaagtcacgtgtacaaggactaa 51122117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 403
Target Start/End: Complemental strand, 31238462 - 31238368
Alignment:
Q  310 catgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaagttg-aaaaattccagttttcacttttca 403  Q
    ||||||||| |||| ||||||| || ||| |||  |||||||||| || ||||||||||||||||| | | |||||||| || ||| ||||||||    
T  31238462 catgctgtgttgtcatgtacacgtgtcaacaaggcagccacgtgtacaaggactaatttgatggaaatggtaaaaattcgagatttaacttttca 31238368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 558
Target Start/End: Original strand, 51122234 - 51122308
Alignment:
Q  484 gtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggcgat 558  Q
    ||||| |||| ||||||||||||||||||| |||  ||   || |||||||||||||||||||||  ||||||||    
T  51122234 gtccccgacctttctccttcccgctaaaaccttcatcaccttctcctctccaaaatcatcatcattgccggcgat 51122308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 11152545 - 11152610
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcga 219  Q
    ||||||| |||||| || |||| |||||||| ||||||| |||||  || ||||||||||||||||    
T  11152545 gagtgaatcatcaacttcgtccctgaattttcacgggtcggccaatttcgtccctcaattatgcga 11152610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 47264124 - 47264189
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcga 219  Q
    |||||||||||||| ||||||| |||||||| ||| ||| |||||  |  ||||||||||||||||    
T  47264124 gagtgaaccatcaagttagtccctgaattttcacgcgtcggccaatttagtccctcaattatgcga 47264189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 153 - 245
Target Start/End: Complemental strand, 5784959 - 5784867
Alignment:
Q  153 cgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    |||||||| |||||| || |||| |||||||| ||||||| | |||  || |||||||||||||||| | |||||  || | |||||||||||    
T  5784959 cgagtgaatcatcaacttcgtccctgaattttcacgggtcggtcaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgt 5784867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 404
Target Start/End: Complemental strand, 50556065 - 50555969
Alignment:
Q  309 gcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaagttg-aaaaattccagttttcacttttcaa 404  Q
    |||||||||| |||| ||||||| || ||| |||  || ||||||| || ||||||||||||||||| | | |||||||| || ||| |||||||||    
T  50556065 gcatgctgtgttgtcatgtacacgtgtcaacaagggagtcacgtgtacaaggactaatttgatggaaatggtaaaaattcgagatttgacttttcaa 50555969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 154 - 650
Target Start/End: Complemental strand, 35292505 - 35292010
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| ||||||||||||||| ||||  ||||||||||||| |||||||||||| | |||||| |||| |||||||||||||||||||    
T  35292505 gagtgaaccatcaaattcgtccttgaatttttatgggtg-gccaaaatcatccttcaattatgcgaaatatcaacttagtccctgaatttgtcagacgtc 35292407  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||| |||||||| || ||||| |||||| ||  |||||||||||||| |||| |||| |||||||||||| |||||||||| |||| ||||    
T  35292406 cataaaaaaggttcctccgtccaaatgctccgttagctattctgatctgtcgcccaacatgttgtgctgtcttgtacacgtggcaaaaaggaagctacgt 35292307  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnnatgttattccaattttgcccctatattacccatacctcctt 452  Q
    ||||| |||||||||||||| ||||  |||||||||||||||||||||||||       |||||||||||||||||||||| ||||||||||||||||||    
T  35292306 gttcaaggactaatttgatgaaagtgaaaaaattccagttttcacttttcaatttttttatgttattccaattttgcccctgtattacccatacctcctt 35292207  T
Q  453 cctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctcc 552  Q
    ||||||||| |||||||||||||       | ||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35292206 cctcacattccactcagaaacat-caaaaacatccttgatccttctccttccccctaaaactttctccattctcacctctccaaaatcatcatcatctcc 35292108  T
Q  553 ggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcacccttt 650  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| | ||||| ||| ||||||||    
T  35292107 ggcgattctcacgtttttaaagtttctgtgttcggctgtggttaaaggtaaaacctttcctctagtttatcaagtttctatgttcgtatccacccttt 35292010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 152 - 650
Target Start/End: Complemental strand, 43318186 - 43317696
Alignment:
Q  152 tcgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacg 251  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||| | |||||| |||| |||||||||||||||||    
T  43318186 tcgagtgaaccatcaaattcgtccttgaatttttatgggtcggccaaaatcatccctcaattatgcgaaatatcaacttagtccctgaatttgtcagacg 43318087  T
Q  252 tccattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccac 350  Q
    ||||| |||||||||||||||| ||||||||||||||||||||  ||| |||||||||||||| |||| |||||||||||  |||||||||| |||||||    
T  43318086 tccataaaaaaggtccctccgtccaagtgctctgttagccatgccgatatgtcgcccagcatgttgtgctgtcttgtacatgtggcaaaaaggaagccac 43317987  T
Q  351 gtgttcacggactaatttgatggaagttgaaaaattccagttttcacttttc-aannnnnnnatgttattccaattttgcccctatattacccatacctc 449  Q
    ||||||| |||||||||||||| |||| |||||||| ||||||||||||||| ||       |||||||| ||||||||||||| |||||||||||||||    
T  43317986 gtgttcaaggactaatttgatgaaagtggaaaaatttcagttttcacttttcaaatttttttatgttatttcaattttgcccctgtattacccatacctc 43317887  T
Q  450 cttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatc 549  Q
    |||||||||||| |||||| |||||          ||| ||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||    
T  43317886 cttcctcacattccactcaaaaaca----------tccttgacccttctcctcccccctaaaactttctccattctcacctccccaaaatcatcatcatc 43317797  T
Q  550 tccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcaccctt 649  Q
    |||||||||||||  ||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| | ||||| ||| |||||||    
T  43317796 tccggcgattctcttgtttttgaaatttctgtgttcggttgtggttaaaggtaacacctttcctctagtttatcaagtttctatgttcgtatccaccctt 43317697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 154 - 642
Target Start/End: Complemental strand, 38178217 - 38177723
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    |||||||| |||||||| |||||| |||||| ||||||| | |||| ||||||||||||||||||| | |||||  ||||  ||||||||||||||||||    
T  38178217 gagtgaactatcaaattcgtccttaaattttcacgggtcggtcaaattcatccctcaattatgcgaaatatcaatttagtatctgaatttgtcagacgtc 38178118  T
Q  254 cattaaaaaggtccctccgtcaa-gtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||||| |||| | |||||| |||||||||| |||| ||||| || |||||||||| |||||||||||| | |||||||| ||| |||||    
T  38178117 catcaaaaaggtcccttcgtccatgtgctccgttagccatgctgatatgtcgtcctgcatgctgtgttgtcttgtacacgtagcaaaaaggaagtcacgt 38178018  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnnatgtta------ttccaattttgcccctatattacccatac 446  Q
    ||||| ||||||| ||||| ||  |  ||||| | || |||||||||||||         | ||       |||| |||||||||||  |||||||||||    
T  38178017 gttcaaggactaacttgattgatttgaaaaaagttcaattttcacttttcagtttaattttttttctgcttttcccattttgcccctgcattacccatac 38177918  T
Q  447 ctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatc 546  Q
     |||||||||||||||| |||||||||||       ||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  38177917 ttccttcctcacatttctctcagaaacataaaaaa-cgtccttgactcttctccttcctgctaaaactttctccattctcacctctccaaaaccatcatc 38177819  T
Q  547 atctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatatt 642  Q
    |||| ||  |||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||| || |||||||| ||| ||||||| ||||    
T  38177818 atcttcgatgattctcacgtttttgaagttgttgtgttcggttgtggttaaaggtaacacctttcctctaatttatcaagtttctgtgttcgtatt 38177723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 154 - 642
Target Start/End: Complemental strand, 38205441 - 38204947
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    |||||||| |||||||| |||||| |||||| ||||||| | |||| ||||||||||||||||||| | |||||  ||||  ||||||||||||||||||    
T  38205441 gagtgaactatcaaattcgtccttaaattttcacgggtcggtcaaattcatccctcaattatgcgaaatatcaatttagtatctgaatttgtcagacgtc 38205342  T
Q  254 cattaaaaaggtccctccgtcaa-gtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||||| |||| | |||||| |||||||||| |||| ||||| || |||||||||| |||||||||||| | |||||||| ||| |||||    
T  38205341 catcaaaaaggtcccttcgtccatgtgctccgttagccatgctgatatgtcgtcctgcatgctgtgttgtcttgtacacgtagcaaaaaggaagtcacgt 38205242  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnnatgtta------ttccaattttgcccctatattacccatac 446  Q
    ||||| ||||||| ||||| ||  |  ||||| | || |||||||||||||         | ||       |||| |||||||||||  |||||||||||    
T  38205241 gttcaaggactaacttgattgatttgaaaaaagttcaattttcacttttcagtttaattttttttctgcttttcccattttgcccctgcattacccatac 38205142  T
Q  447 ctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatc 546  Q
     |||||||||||||||| |||||||||||       ||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  38205141 ttccttcctcacatttctctcagaaacataaaaaa-cgtccttgactcttctccttcctgctaaaactttctccattctcacctctccaaaaccatcatc 38205043  T
Q  547 atctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatatt 642  Q
    |||| ||  |||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||| || |||||||| ||| ||||||| ||||    
T  38205042 atcttcgatgattctcacgtttttgaagttgttgtgttcggttgtggttaaaggtaacacctttcctctaatttatcaagtttctgtgttcgtatt 38204947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 154 - 646
Target Start/End: Original strand, 32087514 - 32088005
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| |||| |||||||| ||| |||   |||  || ||||| |||||||||| | |||||| |||| ||| ||||| |||||||||    
T  32087514 gagtgaaccatcaaattcgtccctgaattttcacgcgtcgatcaacttcgtcccttaattatgcgaaatatcaacttagtcccttaatttttcagacgtc 32087613  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| ||||||||||||||||| |||||||||||||||| || |||||| |||||  |||||||||| |||||||||| | |||||| ||| |||||||||    
T  32087614 catcaaaaaggtccctccgtccaagtgctctgttagccttgctgatctatcgccttgcatgctgtgttgtcttgtacgcgtggcaagaaggaagccacgt 32087713  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttca----annnnnnnatgttattccaattttgcccctatattacccatacct 448  Q
    ||||| ||||||||||||| ||| | |||||  |  |||||||||||||||    |        |||| |||| ||||||||||||||||||||||||||    
T  32087714 gttcagggactaatttgattgaattggaaaatgttgagttttcacttttcagtttatttttttctgtttttcccattttgcccctatattacccatacct 32087813  T
Q  449 ccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcat 548  Q
    ||||| ||||||||||      |||||       ||||| |||||||||| |||| ||||||||||| |||||||  |||| ||||||||||||||||||    
T  32087814 ccttcttcacatttca-----gaacat-caaaaacgtccttgacccttcttcttctcgctaaaacttcctccatttccacccctccaaaatcatcatcat 32087907  T
Q  549 ctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcacc 646  Q
    |||| |||||| |  | |||||||||||| |||||||||||||| |||||||||||||||||||| | ||||||||| ||| ||||||  ||||||||    
T  32087908 ctccagcgattataccatttttgaagtttgtgtgttcggctgtgattaaaggtaacacctttcctgttgtttatcaagtttttgtgttagtattcacc 32088005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 154 - 648
Target Start/End: Complemental strand, 18728726 - 18728233
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| |||| |||||||| ||  ||| |||||  || ||||| |||||||||| | |||||| |||| |||||||||||||||||||    
T  18728726 gagtgaaccatcaaattcgtccctgaattttcacttgtcggccaacttcgtcccttaattatgcgaaatatcaacttagtccctgaatttgtcagacgtc 18728627  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||||||||| ||||||||||||||||| || ||||||||| ||  |||||||||| |||||||||||| |||||| ||| |||||||||    
T  18728626 catcaaaaaggtccctccgtccaagtgctctgttagccttgctgatctgtcaccttgcatgctgtgttgtcttgtacacgtggcaagaaggaagccacgt 18728527  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttca----annnnnnnatgttattccaattttgcccctatattacccatacct 448  Q
    ||| | ||||||||||||| ||| | |||||  |  |||||||||||||||    |        || | |||| ||||| |||||  |||||||||||||    
T  18728526 gttaagggactaatttgattgaattggaaaatgttgagttttcacttttcagtttatttttttctgcttttcccattttacccctgcattacccatacct 18728427  T
Q  449 ccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcat 548  Q
    ||||| ||||||||||      |||||       ||||  |||||||||| |||| ||||||||||| ||||||| ||||| ||||||||||||||||||    
T  18728426 ccttcttcacatttca-----gaacat-caaaaacgtctttgacccttcttcttctcgctaaaacttcctccattttcacccctccaaaatcatcatcat 18728333  T
Q  549 ctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcaccct 648  Q
    |||||||||||||  | |||||||||||| |||||||||||||| ||||||||||  |||||||| | ||||||||| ||| ||||||  ||||||||||    
T  18728332 ctccggcgattctaccatttttgaagtttgtgtgttcggctgtgattaaaggtaatgcctttcctgttgtttatcaagtttttgtgtttgtattcaccct 18728233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 154 - 648
Target Start/End: Original strand, 35395333 - 35395823
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    |||||||||||||||||  ||| |||||||| ||  ||| |||||  || |||||||||||||||| | |||||  |||||||||||||||| |||||||    
T  35395333 gagtgaaccatcaaattcatccctgaattttcacacgtcggccaacttcgtccctcaattatgcgaaatatcaatttagttcctgaatttgttagacgtc 35395432  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| ||||||||||||||||| ||||||||||||||||||| |||| |||||||  ||||| |||  |||||||||| | |||||| ||| ||||||| |    
T  35395433 catcaaaaaggtccctccgtccaagtgctctgttagccatgctgatatgtcgccttgcatggtgt--tgtcttgtacgcgtggcaagaaggaagccacat 35395530  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnnatgtta----ttccaattttgcccctatattacccatacct 448  Q
    ||||| ||||||||||||| ||| | |||||| |   ||||  |||||||||        | ||     |||| |||||||||||  |||||||||||||    
T  35395531 gttcagggactaatttgattgaattggaaaaagttgcgttta-acttttcaatttattattttttgcttttcctattttgcccctgcattacccatacct 35395629  T
Q  449 ccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcat 548  Q
    ||||| ||||||||||      |||||       ||||| |||||||||| |||||||||||||||| ||||||| ||||| ||||||||||||||||||    
T  35395630 ccttcttcacatttcag-----aacatcaaaca-cgtccttgacccttcttcttcccgctaaaacttcctccattttcacccctccaaaatcatcatcat 35395723  T
Q  549 ctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcaccct 648  Q
    ||||| ||||||| || |||||||||||| |||||||||||||| ||||||||||| |||||| | | ||||||||| ||| ||||||| ||||||||||    
T  35395724 ctccgacgattctgacatttttgaagtttgtgtgttcggctgtgattaaaggtaacgcctttcttgttgtttatcaagtttctgtgttcgtattcaccct 35395823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 154 - 403
Target Start/End: Original strand, 33256400 - 33256650
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| |||| |||||||||||  ||| |||||  |||||| |||||||||||| | |||||| || |   |||||||||||||||||    
T  33256400 gagtgaaccatcaaattcgtccctgaatttttacacgtcggccaacttcatccttcaattatgcgaaatatcaacttaatctttgaatttgtcagacgtc 33256499  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| ||||| ||||||||||| |||| ||| ||||||| || ||||||||| ||  |||||||||| ||||||||||   |||||| ||| |||||||||    
T  33256500 catcaaaaaagtccctccgtccaagtcctccgttagccttgctgatctgtcaccttgcatgctgtgttgtcttgtacgagtggcaagaaggaagccacgt 33256599  T
Q  353 gttcacggactaatttgatggaagttgaaaaat-tccagttttcacttttca 403  Q
    ||||| ||||||||||||| ||| ||||||||| |  |||||||||||||||    
T  33256600 gttcagggactaatttgattgaa-ttgaaaaatgttgagttttcacttttca 33256650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 214 - 545
Target Start/End: Complemental strand, 32838567 - 32838236
Alignment:
Q  214 atgcgacacatcaacctagttcctgaatttgtcagacgtccattaa---aaaggtccctccgtcaa-gtgctctgttagccatgttgatctgtcgcccag 309  Q
    |||||| | |||||| || || |||||||||||||||| |||||||   |||||||  || ||||| |||||| ||||| ||||||||| ||||| ||      
T  32838567 atgcgaaatatcaacttaatttctgaatttgtcagacgaccattaattaaaaggtctttctgtcaaagtgctccgttagtcatgttgatatgtcgtccta 32838468  T
Q  310 catgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnn 409  Q
    ||||||||| |||||||||||||| |||| ||| |||||||||||||| ||| ||||||||  ||  | |||||| | || |||||||||   ||         
T  32838467 catgctgtgttgtcttgtacacatagcaagaaggaagccacgtgttcaaggaataatttgaatgatttggaaaaagttcaattttcactt---aattttt 32838371  T
Q  410 nnatgttattccaattttgcccctatattacccatacctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgcta 509  Q
       || | |||| |||||||||||  ||||||||||| |||||||||||||||| |||||||||||       ||||  |||| ||||||||||||||||    
T  32838370 tcctgcttttcccattttgcccctgcattacccatacttccttcctcacatttctctcagaaacat-aaaaaacgtcattgactcttctccttcccgcta 32838272  T
Q  510 aaactttctccattctcacctctccaaaatcatcat 545  Q
    ||||||||||||||||||||||||||||| ||||||    
T  32838271 aaactttctccattctcacctctccaaaaccatcat 32838236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 489 - 649
Target Start/End: Original strand, 33256733 - 33256893
Alignment:
Q  489 tgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggcgattctcacgtttttgaagtttctgtgttcggc 588  Q
    |||| ||||| |||| | ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| | || |||||||||||| |||||||||     
T  33256733 tgacacttcttcttctcactaaaacttcctccattttcacccctccaaaatcatcatcatctccggcgattttgacatttttgaagtttgtgtgttcggt 33256832  T
Q  589 tgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcaccctt 649  Q
    |||| ||||||||||| |||||||| | ||||||||| ||| ||||||| |||||||||||    
T  33256833 tgtgattaaaggtaacgcctttcctgttgtttatcaagtttttgtgttcgtattcaccctt 33256893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 223 - 365
Target Start/End: Original strand, 38597014 - 38597157
Alignment:
Q  223 atcaacctagttcctgaatttgtcagacgtccattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatg 321  Q
    |||||| |||| ||| |||||||||||||||||| ||||||||||||| ||| ||||| || ||||||| || ||||||||||||| |||||||||| ||    
T  38597014 atcaacttagtcccttaatttgtcagacgtccatcaaaaaggtccctctgtccaagtgttccgttagccgtgctgatctgtcgccctgcatgctgtgttg 38597113  T
Q  322 tcttgtacacatggcaaaaagaaagccacgtgttcacggactaa 365  Q
    |||||||||| |||||| ||| ||||| |||||||| |||||||    
T  38597114 tcttgtacacgtggcaagaaggaagccgcgtgttcaaggactaa 38597157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 38596868 - 38596980
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| ||||||||||||||| ||||| |||||| || |||||||||||||||| | |||||| |||| ||||||||||| |||||||    
T  38596868 gagtgaaccatcaaattcgtccttgaatttttatgggtcggccaaattcgtccctcaattatgcgaaatatcaacttagtccctgaatttgttagacgtc 38596967  T
Q  254 cattaaaaaggtc 266  Q
    ||| |||||||||    
T  38596968 catcaaaaaggtc 38596980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 541 - 642
Target Start/End: Complemental strand, 32837082 - 32836981
Alignment:
Q  541 atcatcatctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcata 640  Q
    |||||||||| || ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||| || |||||||| ||| ||||||| ||    
T  32837082 atcatcatcttcgacgattttcacgtttttgaagttgttgtgttcggctgtggttaaaggtaacacctttcctctaatttatcaagtttctgtgttcgta 32836983  T
Q  641 tt 642  Q
    ||    
T  32836982 tt 32836981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 41741433 - 41741381
Alignment:
Q  81 cttgtttgggtgaatgaaaagcactttcaaaaaactcagttttaagaccaaaa 133  Q
    |||||||||||||||||||||| ||| |||||||||||||||| |||||||||    
T  41741433 cttgtttgggtgaatgaaaagcgcttccaaaaaactcagttttgagaccaaaa 41741381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 40330606 - 40330515
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    ||||||| |||||| || |||| |||||||| ||||||| ||||||||| |||||||||||||||| | |||||  || | |||||||||||    
T  40330606 gagtgaatcatcaacttcgtccctgaattttcacgggtcggccaaaatcgtccctcaattatgcgaaatatcaatttaatccctgaatttgt 40330515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 32090016 - 32089925
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    ||||||| |||||| || |||| |||||||||||||||| |||||  || |||||||||||||||| | |||||  || | |||||||||||    
T  32090016 gagtgaatcatcaacttcgtccctgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgt 32089925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 164 - 375
Target Start/End: Original strand, 17574328 - 17574539
Alignment:
Q  164 tcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtccattaaaaag 263  Q
    ||||||| ||||||||||||| |    || |||||| || ||||| |||| ||||| | ||| |  |||| |||||||||  ||||||||||| |||| |    
T  17574328 tcaaattcgtccttgaattttaaaaaatcggccaaattcgtccctgaattttgcgaaatatctatttagtccctgaattttacagacgtccatcaaaatg 17574427  T
Q  264 gtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggac 362  Q
    ||||||||||| ||  |||| |||||   || |||  |||| ||  |||||||||| |||||||||||| || ||| |||  |||||||||| || ||||    
T  17574428 gtccctccgtccaaaagctccgttagtggtgatgacgtgtc-ccttgcatgctgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggac 17574526  T
Q  363 taatttgatggaa 375  Q
    ||| |||||||||    
T  17574527 taaattgatggaa 17574539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 2431111 - 2431057
Alignment:
Q  78 cagcttgtttgggtgaatgaaaagcactttcaaaaaactcagttttaagaccaaaa 133  Q
    |||||||||||| |||||||||||| | ||| |||||||||||||| |||||||||    
T  2431111 cagcttgtttggatgaatgaaaagcgc-ttccaaaaactcagttttgagaccaaaa 2431057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 24498116 - 24498065
Alignment:
Q  196 caaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtca 247  Q
    |||||||||||||||||||||||| | |||||  |||| |||||||||||||    
T  24498116 caaaatcatccctcaattatgcgataaatcaaattagtccctgaatttgtca 24498065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 42620749 - 42620686
Alignment:
Q  312 tgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaa 375  Q
    ||||||| || ||||||||| ||| ||||||||||||||||||  | ||||||| |||||||||    
T  42620749 tgctgtgttggcttgtacacgtgggaaaaagaaagccacgtgtatagggactaaattgatggaa 42620686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 319 - 404
Target Start/End: Original strand, 12737304 - 12737390
Alignment:
Q  319 atgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaagttg-aaaaattccagttttcacttttcaa 404  Q
    ||||| ||||||| || ||| |||| |||||||||| || ||||||||||||||||| | | |||||||| || ||| |||||||||    
T  12737304 atgtcatgtacacgtgtcaacaagacagccacgtgtacaaggactaatttgatggaaatggtaaaaattcgagatttgacttttcaa 12737390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 33257854 - 33257760
Alignment:
Q  151 atcgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    |||||||| | |||||| || |||| |||||||||||||||| |||||  || ||||| |||||||||| | |||||  || | |||||||||||    
T  33257854 atcgagtggatcatcaacttcgtccctgaatttttacgggtcggccaacttcgtcccttaattatgcgaaatatcaatttaatccctgaatttgt 33257760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 558
Target Start/End: Original strand, 24497112 - 24497145
Alignment:
Q  525 tcacctctccaaaatcatcatcatctccggcgat 558  Q
    ||||||||||||||||||||||||||| ||||||    
T  24497112 tcacctctccaaaatcatcatcatctctggcgat 24497145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 42619286 - 42619354
Alignment:
Q  151 atcgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcga 219  Q
    |||||||||| |||||| || |||| |||||||| ||||||| | |||  || ||||||||||||||||    
T  42619286 atcgagtgaatcatcaacttcgtccctgaattttcacgggtcggtcaatttcgtccctcaattatgcga 42619354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 154 - 646
Target Start/End: Original strand, 23953805 - 23954302
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| |||||| |||||||||||||| |  ||| || ||| |||||||||||| | |||||| |||| | |||||||||||||||||    
T  23953805 gagtgaaccatcaaattcgtccttaaatttttacgggtcggtaaaattcgtccatcaattatgcgaaatatcaacttagtccgtgaatttgtcagacgtc 23953904  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
     || |||||||||||||||| ||||||||| |||||||||| |||| |||||||  ||||| |||| |||||||||||| |||||||||| |||||||||    
T  23953905 aatcaaaaaggtccctccgtccaagtgctccgttagccatgctgatatgtcgccatgcatgttgtgttgtcttgtacacgtggcaaaaaggaagccacgt 23954004  T
Q  353 gttcacggactaatttgatgga-agttgaaaaattccagttttcacttttcaa----nnnnnnnatgttattccaattttgcccctatattacccatacc 447  Q
    ||||  |||||||||||||||| ||| ||||||||||| ||||||||||||||           |||||||||||||||||||||| |||||||||||||    
T  23954005 gttccaggactaatttgatggatagtggaaaaattccaattttcacttttcaattttattttttatgttattccaattttgcccctgtattacccatacc 23954104  T
Q  448 tccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatca 547  Q
    ||||||||||||||||  ||| ||||||       ||||| |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  23954105 tccttcctcacatttctttcataaacat-aaaaaacgtccttgactcttctcctacctgctaaaactttctccattctcacctctccaaaatcatcatca 23954203  T
Q  548 tctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcacc 646  Q
    ||||  ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| ||||| ||| ||||||| ||||||||    
T  23954204 tctctcgcgattctcacgtttttgaagtttctgagttcggctgtggttaaaggtagcacctttcctatagttaatcaagtttctgtgttcgtattcacc 23954302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 154 - 566
Target Start/End: Original strand, 2167479 - 2167890
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||  |||||||||||  |||||||| | |||| ||||||||||||||||||| | |||||| |||| ||||||||||||||||| |    
T  2167479 gagtgaaccatcaaatatgtccttgaattagtacgggtcggtcaaattcatccctcaattatgcgaaatatcaacttagtccctgaatttgtcagacgcc 2167578  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||||||||| |||||||||  ||||||||| |||  |||| ||| ||||| |||| |||||||||||| |||||||||||||||||||     
T  2167579 catcaaaaaggtccctccgtccaagtgctccattagccatgctgacgtgtcaccctgcatgatgtgttgtcttgtacacgtggcaaaaagaaagccacgc 2167678  T
Q  353 gttcacggactaatttgatgga-agttgaaaaattccagttttcacttttcaannnnnnnatgttattccaattttgcccctatattacccatacctcct 451  Q
    ||||| |||||||||||||||| | | |||||||| |||||||||||||  ||       |||||||||||||||||||||| |||||||||||||||||    
T  2167679 gttcaaggactaatttgatggatactggaaaaatttcagttttcacttt--aatttttttatgttattccaattttgcccctgtattacccatacctcct 2167776  T
Q  452 tcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctc 551  Q
    ||||||||||||| ||||||||||       ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2167777 tcctcacatttcaatcagaaacat-caaaaacgtctttgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcttcatctc 2167875  T
Q  552 cggcgattctcacgt 566  Q
    |||||||||||||||    
T  2167876 cggcgattctcacgt 2167890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 154 - 645
Target Start/End: Complemental strand, 33038921 - 33038435
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||| ||||||||| ||||||||||||||| ||||| | |||| ||||||||||||||||||| | |||||| |||| ||||||||| |||||||||    
T  33038921 gagtgaatcatcaaattcgtccttgaatttttatgggtcggtcaaattcatccctcaattatgcgaaatatcaacttagtccctgaatttttcagacgtc 33038822  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||||||||| ||||||||||||||| ||||||||||||||| || ||||| |||| |||||| ||||| || ||| ||| |||||| ||    
T  33038821 catcaaaaaggtccctccgtccaagtgctctgttaggcatgttgatctgtcgtcctgcatgttgtgttgtcttatacacgtgtcaagaaggaagccatgt 33038722  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnnatgttattccaattttgcccctatattacccatacctcctt 452  Q
    ||||| ||||| ||||||| ||| | |||||  || |||||||||||||           || | |||  |||||||||||  ||||  |||||||||||    
T  33038721 gttcaaggactgatttgattgaattggaaaatgtctagttttcactttt----tttcttctgcttttctcattttgcccctgcattatacatacctcctt 33038626  T
Q  453 cctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctcc 552  Q
    | |||||||||||||||||||||       ||||  | ||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  33038625 cttcacatttcactcagaaacat-caaaaacgtcattaacccttccccttcccgctaaaactttctccattcccacccctccaaaatcatcatcatctcc 33038527  T
Q  553 ggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcac 645  Q
    ||||||||||| ||||||||||||| || ||||  ||||| ||||||||||  |||||| | ||||||||||| ||||||||||| |||||||    
T  33038526 ggcgattctcatgtttttgaagtttatgcgttcaactgtgattaaaggtaa-gcctttcatgtagtttatcaagtttatgtgttcgtattcac 33038435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 151 - 641
Target Start/End: Original strand, 40784343 - 40784838
Alignment:
Q  151 atcgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagac 250  Q
    |||||||||||||||||||| || |||||||||||||| ||| || ||| |||||| |||||||||||| | |||||| ||||   ||||||||||||||    
T  40784343 atcgagtgaaccatcaaattcgttcttgaatttttacgcgtcagctaaattcatccttcaattatgcgaaatatcaacttagtctttgaatttgtcagac 40784442  T
Q  251 gtccattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagcca 349  Q
     ||||| ||||||||||||||||| || ||| ||||||  |||| |||||||||| || ||||| |||| |||||| ||||| |||||| ||| ||||||    
T  40784443 atccatcaaaaaggtccctccgtccaaatgcgctgttaatcatgctgatctgtcgtcctgcatgttgtgttgtcttatacacgtggcaagaaggaagcca 40784542  T
Q  350 cgtgttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnnatgttat-----tccaattttgcccctatattacccat 444  Q
    | |||||| ||||||||||||| ||| | |||||  || | |||||||||||||         | || |     ||| |||||||||||  ||||| |||    
T  40784543 catgttcaaggactaatttgattgaattggaaaaggtcaaattttcacttttcagtttattttttttctgcttttcccattttgcccctgcattactcat 40784642  T
Q  445 acctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatca 544  Q
    ||||||||| |||||||||||| ||||||||         ||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40784643 acctccttcttcacatttcacttagaaacataaaaaata-tcattgacccttctccttcccgctaaaactttctccattctcacccctccaaaatcatca 40784741  T
Q  545 tcatctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatat 641  Q
     |||||  |||||||||||||| |||||||||| ||||||||| |||||||||||||||| | ||| || ||||||||||||||| ||||| |||||    
T  40784742 ccatctttggcgattctcacgtgtttgaagtttttgtgttcggttgtggttaaaggtaacgcattttctgtagtttatcaaatttctgtgtacatat 40784838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 154 - 591
Target Start/End: Complemental strand, 46812706 - 46812265
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    |||||||||||||| || ||||||||||||||||| ||| |||||| |||||||||||||| | || | |||||  |||| ||| |||||||||||||||    
T  46812706 gagtgaaccatcaacttcgtccttgaatttttacgagtcggccaaattcatccctcaattacgtgaaatatcaatttagtccctaaatttgtcagacgtc 46812607  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||  |||||| ||||||||||||||||||| |||| |||||||| |||||||||| ||||||||||   |||||| ||| |||||||||    
T  46812606 catcaaaaaggtcattccgtccaagtgctctgttagccatgctgatatgtcgccctgcatgctgtgttgtcttgtacgtgtggcaagaaggaagccacgt 46812507  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttca----annnnnnnatgttattccaattttgcccctatattacccatacct 448  Q
    ||||| |||||| |||||| ||| |||||||  | || |||||||||||||             || | |||| |||||||||||  ||||| |||||||    
T  46812506 gttcaaggactactttgattgaatttgaaaaggttcaattttcacttttcagttttctttattctgcttttcccattttgcccctgcattactcatacct 46812407  T
Q  449 ccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcat 548  Q
    | ||| |||||||||| ||||||||||       || || ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  46812406 cattcttcacatttcagtcagaaacat-caaaaacgaccttgacctttctccttcccactaaaactttctccattctcacccctccaaaatcatcatcat 46812308  T
Q  549 ctccggcgattctcacgtttttgaagtttctgtgttcggctgt 591  Q
    ||||| ||||||| |||||||||||||||||||||||||||||    
T  46812307 ctccgacgattctgacgtttttgaagtttctgtgttcggctgt 46812265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 154 - 611
Target Start/End: Complemental strand, 47341810 - 47341355
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||| | |||||| |||| ||||||||||||||||||     
T  47341810 gagtgaaccatcaaattcgtccttgaattttcacgggtcggccaaattcatccctcaattatgcgaaatatcaacttagtccctgaatttgtcagacgtt 47341711  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgccc----agcatgctgtgatgtcttgtacacatggcaaaaagaaagcc 348  Q
     || ||||||||  |||||| ||||||||| ||||||||||  ||  ||||||||     |||||||||| |||||||||||| |||||| ||| |||||    
T  47341710 aatcaaaaaggtatctccgtccaagtgctccgttagccatggggacatgtcgccctgcatgcatgctgtgttgtcttgtacacgtggcaagaaggaagcc 47341611  T
Q  349 acgtgttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnnatgttattccaattttgcccctatattacccatacct 448  Q
    ||||||||| ||||||||||||| ||| | |||||| |||||||||||||||   |        || | |||| |||||||||||  |||||||||||||    
T  47341610 acgtgttcaaggactaatttgattgaattggaaaaagtccagttttcacttt---atttttttctgcttttcccattttgcccctgcattacccatacct 47341514  T
Q  449 ccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcat 548  Q
    ||||| |||||||||| | ||||||||       | ||| ||||  ||| |||| ||||||||||||||| |||||||||| |||||||||||||||||     
T  47341513 ccttcttcacatttcagtgagaaacat-caaaaacatccttgacatttcacctttccgctaaaactttcttcattctcacccctccaaaatcatcatca- 47341416  T
Q  549 ctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttc 611  Q
      ||| ||||||| | |||||||| ||||||||||||||||||| ||||||||||| ||||||    
T  47341415 --ccgacgattctgaagtttttgacgtttctgtgttcggctgtgattaaaggtaacgcctttc 47341355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 154 - 646
Target Start/End: Complemental strand, 46996826 - 46996335
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| |||| |||||||| ||| ||| |||||  || |||||||||||||||| | |||||| ||||  ||||||||||||||||||    
T  46996826 gagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaacttcgtccctcaattatgcgaaatatcaacttagtcactgaatttgtcagacgtc 46996727  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||||||||| ||||||||| |||||| ||| ||||||||||||  |||||||||| |||||||||| | |||||| ||| |||||||||    
T  46996726 catcaaaaaggtccctccgtccaagtgctccgttagcgatgctgatctgtcgccttgcatgctgtgttgtcttgtacgcgtggcaagaaggaagccacgt 46996627  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttca----annnnnnnatgttattccaattttgcccctatattacccatacct 448  Q
    ||||| |||| |||||||| ||| | |||||  |  |||||||||||||||    |        || | |||| |||||||||||| |||||||||||||    
T  46996626 gttcaaggacgaatttgattgaattggaaaatgttgagttttcacttttcagtttatttttttctgcttttcccattttgcccctacattacccatacct 46996527  T
Q  449 ccttcctcacatttcactcagaaacatnnnnnnncgtccctgacc---cttctccttcccgctaaaactttctccattctcacctctccaaaatcatcat 545  Q
    |||   | ||||||||      |||||       ||||| |||||   ||||| |||| ||||||||||| ||||||| ||||| |||||||||||||||    
T  46996526 cct---ttacatttca-----gaacat-caaaaacgtccttgacccttcttcttcttctcgctaaaacttcctccattttcacccctccaaaatcatcat 46996436  T
Q  546 catctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcac 645  Q
    |||||||| ||||||| || |||||||||||| |||||||||||||| |||||||||||||||||||| | ||||||||| ||| ||||||| |||||||    
T  46996435 catctccgacgattctgacatttttgaagtttgtgtgttcggctgtgattaaaggtaacacctttcctgttgtttatcaagtttttgtgttcgtattcac 46996336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 154 - 622
Target Start/End: Original strand, 27955370 - 27955841
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||| ||||||||| |||||||||||||||||| || || ||| ||||||||||||| | ||| | |||||| || || ||||||||||||||||||    
T  27955370 gagtgaatcatcaaattcgtccttgaatttttacggatcagctaaattcatccctcaattttacgaaatatcaacttaatttctgaatttgtcagacgtc 27955469  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| ||| |||||||||||| ||||||||| ||||| |||| |||| |||||  | ||||| |||| |||||||||||| |||||| ||| |||||| ||    
T  27955470 catcaaagaggtccctccgtccaagtgctccgttagtcatgctgatgtgtcgtgctgcatgttgtgttgtcttgtacacttggcaacaaggaagccatgt 27955569  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttca----annnnnnnatgttattccaattttgcccctatattacccatacct 448  Q
    ||||| |||| |||||||||||||  |||||||| ||||||||| ||||||    |        || | |||| ||||| | | | ||||||||||||||    
T  27955570 gttcaaggaccaatttgatggaagccgaaaaatttcagttttcatttttcaatttaattttttctgcttttcccattttactcatgtattacccatacct 27955669  T
Q  449 ccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcat 548  Q
    |||||||||| ||||| ||||||||||       ||||| |||||||||| ||||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  27955670 ccttcctcacttttcagtcagaaacat-taaaaacgtccttgacccttctgcttcccgcttaaaccttc-ccattctcacctctccaaaatcatcatcat 27955767  T
Q  549 ctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttat 622  Q
    ||||| |||| |||   ||||| |||||  |||||||| ||||||| ||||||||||| |||||| || |||||    
T  27955768 ctccgacgatcctctaattttttaagttgttgtgttcgtctgtggtaaaaggtaacacatttcctctaatttat 27955841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 300 - 566
Target Start/End: Original strand, 38613610 - 38613881
Alignment:
Q  300 tgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatgga-agttgaaaaattccagttttcact 398  Q
    |||||||| ||||| |||| |||||||||||| ||| ||||||||||||||||||||| ||||||| |||||||| ||| ||||| ||||||||||||||    
T  38613610 tgtcgccctgcatggtgtgttgtcttgtacacgtgggaaaaagaaagccacgtgttcaaggactaacttgatggatagtggaaaatttccagttttcact 38613709  T
Q  399 tttca-----annnnnnnatgttattccaattttgcccctatattacccatacctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacc 493  Q
    ||| |     |       |||||||| ||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||        |||  |||||    
T  38613710 ttttagttttatttttttatgttatttcaattttgcccctgtattatccatacctcattcctcacatttcactcagaaacatcaaaaat-gtcattgacc 38613808  T
Q  494 cttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggcgattctcacgt 566  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||    
T  38613809 cttctccttcccgctaaaactttctctattctcacctctccaaaatcatcatcatctccagtgattctcacgt 38613881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 154 - 404
Target Start/End: Original strand, 2492327 - 2492577
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    |||| |||||||||||| ||||| ||||||||||||||| | |||||| |||| |||||||||||| | |||||| || | | ||||||| ||| |||||    
T  2492327 gagtaaaccatcaaattcgtcctcgaatttttacgggtcggtcaaaattatccttcaattatgcgaaatatcaacttaatacttgaatttttcaaacgtc 2492426  T
Q  254 cattaaaaaggtccctccg-tcaagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    || |||||| || |||||| |||||||||| ||||||||||||||||| ||||||| |||||| || |||||||||||| |||||||||| ||| |||||    
T  2492427 ca-taaaaaagttcctccgttcaagtgctccgttagccatgttgatctatcgcccaacatgctctgctgtcttgtacacgtggcaaaaaggaagtcacgt 2492525  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaa 404  Q
    ||||| |||||||||||||||||||  ||||||| || ||||||||||||||    
T  2492526 gttcaaggactaatttgatggaagtgaaaaaatttcaattttcacttttcaa 2492577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 152 - 552
Target Start/End: Complemental strand, 8423407 - 8423002
Alignment:
Q  152 tcgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacg 251  Q
    |||||||||||||||| ||||||| |||||||| ||||||| |||||| |  |||||||||||||||| | |||||  || | ||||||||| |||||||    
T  8423407 tcgagtgaaccatcaatttagtccctgaattttcacgggtcagccaaatttgtccctcaattatgcgaaatatcaatttaatccctgaatttatcagacg 8423308  T
Q  252 tccattaaaaaggtccctccgtcaa-gtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccac 350  Q
    || || |||||||||||||||| || | |||| |||||||||| |||  |||||||  |||||||||| |||||||||| | |||||| ||| |||||||    
T  8423307 tcaatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgccttgcatgctgtgctgtcttgtacgcgtggcaagaaggaagccac 8423208  T
Q  351 gtgttcacggactaatttgatggaagttgaaaaattccagttttcacttttc-----aannnnnnnatgttattccaattttgcccctatattacccata 445  Q
    ||||||| |||| |||||||| ||  | |||||| | || |||||| |||||     ||       ||| | |||| |||||||||||  |||||  ||     
T  8423207 gtgttcagggacgaatttgattgatttggaaaaagttcacttttcatttttcaatttaattttttcatgcttttcccattttgcccctgcattacatatt 8423108  T
Q  446 cctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcat 545  Q
    |||||||| |||||||| ||||||||||||       | ||| |||| |||||||||||||||||||| ||||||||| ||| | |||||||||||||||    
T  8423107 cctccttcttcacattttactcagaaacat-caaaaacatccttgactcttctccttcccgctaaaacgttctccattgtcatccctccaaaatcatcat 8423009  T
Q  546 catctcc 552  Q
    |||||||    
T  8423008 catctcc 8423002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 154 - 552
Target Start/End: Complemental strand, 35344414 - 35344011
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    |||||||||||||| |||||||  ||||||| ||||||| |||||| || |||||||||||||||| | |||||  || | ||||||||| | |||||||    
T  35344414 gagtgaaccatcaatttagtccccgaattttcacgggtcagccaaattcgtccctcaattatgcgaaatatcaatttaatccctgaatttataagacgtc 35344315  T
Q  254 cattaaaaaggtccctccgtcaa-gtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||||||||| || | |||| |||||||||| |||  ||| |||  |||||||||| |||||||||| | |||||| ||| |||||||||    
T  35344314 catcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgttgccttgcatgctgtgctgtcttgtacgcgtggcaagaaggaagccacgt 35344215  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttc-----aannnnnnnatgttattccaattttgcccctatattacccatacc 447  Q
    ||||| |||| |||||||| ||  | |||||| | || |||||| |||||     ||        || | |||| |||||||||||  |||||  || ||    
T  35344214 gttcagggacgaatttgattgatttggaaaaagttcacttttcatttttcaatttaattttttcgtgcttttcccattttgcccctgcattacatattcc 35344115  T
Q  448 tccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatca 547  Q
    |||||| |||||||| ||||||||||||       | ||| | || |||||||||||||||||||| ||||||||| ||||| |||||||||||||||||    
T  35344114 tccttcttcacattttactcagaaacat-caaaaacatccttaactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcatca 35344016  T
Q  548 tctcc 552  Q
    |||||    
T  35344015 tctcc 35344011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 151 - 299
Target Start/End: Complemental strand, 38613608 - 38613459
Alignment:
Q  151 atcgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagac 250  Q
    |||||||||||||||||||| |||||| |||||| ||||||| |||||| ||||||||||||||||||| | |||||| |||| ||||||||||||||||    
T  38613608 atcgagtgaaccatcaaattcgtccttcaattttcacgggtcggccaaattcatccctcaattatgcgaaatatcaacttagtccctgaatttgtcagac 38613509  T
Q  251 gtccattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatc 299  Q
    |||||| ||||| |||| | |||| ||||| | ||||||||||| |||||    
T  38613508 gtccataaaaaatgtccattcgtctaagtgttatgttagccatgctgatc 38613459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 154 - 305
Target Start/End: Complemental strand, 38615035 - 38614884
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||| ||||||||| |||||| |||||| |||||||   |||| ||||||||||||||||||| | || ||| |||| |||||||||||||||||||    
T  38615035 gagtgaaacatcaaattcgtccttaaattttcacgggtcgatcaaattcatccctcaattatgcgaaatattaacttagtccctgaatttgtcagacgtc 38614936  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgc 305  Q
    || |||||| ||||||||||| ||||||||||||||||||| |||||||||||    
T  38614935 ca-taaaaatgtccctccgtctaagtgctctgttagccatgctgatctgtcgc 38614884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 40785639 - 40785548
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    ||||||| |||||| || ||||||||||||| ||||||| |||||| ||||| |||||||||| || | ||||| ||| | |||||||||||    
T  40785639 gagtgaatcatcaatttcgtccttgaattttcacgggtcggccaaattcatctctcaattatgtgaaatatcaatctaatccctgaatttgt 40785548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 418 - 549
Target Start/End: Original strand, 23168354 - 23168485
Alignment:
Q  418 ttccaattttgcccctatattacccatacc-tccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaacttt 516  Q
    |||||||||| ||||| ||||||||||||| ||| ||||||||||||||||||| ||||       | ||  ||||| |||||||||||| |||||| ||    
T  23168354 ttccaattttacccctctattacccataccttccatcctcacatttcactcagacacat-caaacacatcattgacctttctccttcccgttaaaacctt 23168452  T
Q  517 ctccattctcacctctccaaaatcatcatcatc 549  Q
      ||||  | |||||||||||||||||||||||    
T  23168453 taccatcttaacctctccaaaatcatcatcatc 23168485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 30108564 - 30108656
Alignment:
Q  153 cgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    |||||||| |||||| || |||| |||||||||||||||| |||||  || |||||||||||||||| | |||||  || | |||||||||||    
T  30108564 cgagtgaatcatcaacttcgtccctgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgt 30108656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 309 - 404
Target Start/End: Complemental strand, 39859197 - 39859101
Alignment:
Q  309 gcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaagttg-aaaaattccagttttcacttttcaa 404  Q
    |||||||||| |||| ||||||| || ||| |||| |||||||||| || ||||||||||||||||| | | |||||||| || ||| |||||||||    
T  39859197 gcatgctgtgttgtcatgtacacgtgtcaacaagacagccacgtgtacaaggactaatttgatggaaatggtaaaaattcgagatttgacttttcaa 39859101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 8421416 - 8421507
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    ||||||| |||||| ||||||| |||||| | ||||||| |||||| || |||||||||||||||| | |||||  || | |||||||||||    
T  8421416 gagtgaatcatcaacttagtccctgaattatcacgggtcggccaaattcgtccctcaattatgcgaaatatcaatttaatccctgaatttgt 8421507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 35342425 - 35342516
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    ||||||| |||||| ||||||| |||||| ||||||||| |||||| |  |||||||||||||||| | |||||  || | |||||||||||    
T  35342425 gagtgaatcatcaacttagtccctgaattattacgggtcggccaaatttgtccctcaattatgcgaaatatcaatttaatccctgaatttgt 35342516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 45465275 - 45465184
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    ||||||| |||||| || ||||||||||||||||||||| | |||  || |||||||||||||||| | |||||  || | |||||||||||    
T  45465275 gagtgaatcatcaacttcgtccttgaatttttacgggtcggtcaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgt 45465184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 495 - 558
Target Start/End: Original strand, 48704516 - 48704579
Alignment:
Q  495 ttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggcgat 558  Q
    |||| |||||||||||||| ||| ||||  || ||||||||||||||||||||||| |||||||    
T  48704516 ttctacttcccgctaaaaccttcaccatcttcgcctctccaaaatcatcatcatcttcggcgat 48704579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 33037691 - 33037755
Alignment:
Q  152 tcgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatg 216  Q
    |||||| || |||||| || ||||||||||||||| | ||| |||||| ||||||||||||||||    
T  33037691 tcgagtcaatcatcaagttcgtccttgaatttttatgtgtcggccaaattcatccctcaattatg 33037755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 38614884 - 38614820
Alignment:
Q  153 cgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgc 217  Q
    |||||||| |||||| |  ||||||||||||||| ||||| | |||| |||||||||||||||||    
T  38614884 cgagtgaatcatcaactacgtccttgaatttttatgggtcggtcaaattcatccctcaattatgc 38614820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 45463819 - 45463871
Alignment:
Q  323 cttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaa 375  Q
    ||||||||| ||| |||||||||||||||||| || ||||||| |||||||||    
T  45463819 cttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgatggaa 45463871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 48303635 - 48303576
Alignment:
Q  312 tgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgat 371  Q
    ||||||| || ||||||||| ||| |||||||||||||||||| || ||||||| |||||    
T  48303635 tgctgtgttggcttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgat 48303576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 375
Target Start/End: Original strand, 13168279 - 13168345
Alignment:
Q  309 gcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaa 375  Q
    |||||||||| |||| ||||||| || ||| |||| || ||||||| || |||||||||||||||||    
T  13168279 gcatgctgtgttgtcatgtacacgtgtcaacaagacagacacgtgtacaaggactaatttgatggaa 13168345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 596 - 645
Target Start/End: Original strand, 36755395 - 36755444
Alignment:
Q  596 aaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcac 645  Q
    |||||||||||||||||| | ||||||||| || |||||||| |||||||    
T  36755395 aaaggtaacacctttcctgttgtttatcaagttgatgtgttcgtattcac 36755444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 596 - 645
Target Start/End: Original strand, 36761192 - 36761241
Alignment:
Q  596 aaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcac 645  Q
    |||||||||||||||||| | ||||||||| || |||||||| |||||||    
T  36761192 aaaggtaacacctttcctgttgtttatcaagttgatgtgttcgtattcac 36761241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 2168925 - 2168865
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaatta 214  Q
    ||||||| |||||| || |||||||||||||||| ||||  ||||| |||||||| |||||    
T  2168925 gagtgaatcatcaacttcgtccttgaatttttactggtcgtccaaattcatcccttaatta 2168865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 550
Target Start/End: Original strand, 11683136 - 11683192
Alignment:
Q  494 cttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatct 550  Q
    ||||||||| |||||||||| ||| ||||  ||| ||||||||||||| ||||||||    
T  11683136 cttctcctttccgctaaaaccttcaccatcttcatctctccaaaatcaccatcatct 11683192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 404
Target Start/End: Original strand, 45359492 - 45359588
Alignment:
Q  309 gcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaagttg-aaaaattccagttttcacttttcaa 404  Q
    |||||||||| |||| ||||||| |  |||||||  || ||||||| || ||||||||||||||||| | | |||||||| || ||| |||||||||    
T  45359492 gcatgctgtgttgtcatgtacacgtttcaaaaaggcagtcacgtgtacaaggactaatttgatggaaatggtaaaaattcgagatttgacttttcaa 45359588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 48455274 - 48455326
Alignment:
Q  484 gtccctgacccttctccttcccgctaaaactttctccattctcacctctccaa 536  Q
    ||||||||| | |||||||||||||||||||||| ||||  ||| ||||||||    
T  48455274 gtccctgactcatctccttcccgctaaaactttcaccatcttcatctctccaa 48455326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 310 - 401
Target Start/End: Complemental strand, 48852314 - 48852222
Alignment:
Q  310 catgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaagttg-aaaaattccagttttcactttt 401  Q
    |||| |||| |||||||||||  || ||| |||| || ||||||| || | ||||||||||||||| | | ||||||||||||||| ||||||    
T  48852314 catgatgtgttgtcttgtacatgtgtcaacaagacagtcacgtgtacaagaactaatttgatggaaatggtaaaaattccagttttaactttt 48852222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 154 - 642
Target Start/End: Complemental strand, 42897898 - 42897404
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||  ||||||||||||||||||||| |||||| || ||||||||||||| || | |||||| |||| | |||||||||||||||||    
T  42897898 gagtgaaccatcaaatccgtccttgaatttttacgggtcggccaaattcgtccctcaattatgtgaaatatcaacttagtccttgaatttgtcagacgtc 42897799  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||||||||| |||||||||||||||||||| |||||||||| || |||||||||| |||||||||||| |||||| ||| |||||||||    
T  42897798 catcaaaaaggtccctccgtccaagtgctctgttagccatgctgatctgtcgtcctgcatgctgtgttgtcttgtacacgtggcaagaaggaagccacgt 42897699  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaa------nnnnnnnatgttattccaattttgcccctatattacccatac 446  Q
    ||||| |||||||||||||  |  | |||||| |||| || |||||||||||              || | |||| |||||||||||  |||||| ||||    
T  42897698 gttcaaggactaatttgatttatttggaaaaagtccaattatcacttttcaatttaattttttttctgcttttcccattttgcccctgcattaccgatac 42897599  T
Q  447 ctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatc 546  Q
     |||||||||||||||| |||||||||||       ||| | |||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  42897598 ttccttcctcacatttctctcagaaacat-aaaaaacgttcttgactcttctccttcccgctaaaactttctccattctcaccactccaaaaccatcatc 42897500  T
Q  547 atctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatatt 642  Q
    |||| || ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| || |||||||| ||| ||||||| ||||    
T  42897499 atcttcgacgattctcacgtttttgaagttgttgtgttcggctgtggttaaaggtaacacctttcctctaatttatcaagtttctgtgttcgtatt 42897404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 154 - 641
Target Start/End: Complemental strand, 37526147 - 37525659
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| ||||||||||||| ||| ||| | |||| |||| | |||||||||||| | |||||| |||| ||||||||| |||||| ||    
T  37526147 gagtgaaccatcaaattcgtccttgaattttcacgcgtcggtcaaattcattcttcaattatgcgaaatatcaacttagtccctgaatttttcagacatc 37526048  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||||||||| ||||||| ||||||| ||||||||||||||| || | ||| |||| |||||| ||||| |||||| ||| |||||||||    
T  37526047 catcaaaaaggtccctccgtccaagtgcgctgttagtcatgttgatctgtcgtcctgtatgttgtgttgtcttatacacgtggcaagaaggaagccacgt 37525948  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttc-----aannnnnnnatgttattccaattttgcccctatattacccatacc 447  Q
    ||||| |||||||||||||  || | |||||| || | ||||||||||||     |        ||| | |||| ||||||||| |  ||||||||||||    
T  37525947 gttcaaggactaatttgattcaattggaaaaagtcaaattttcacttttctgattatttttttcatgct-ttcccattttgcccatgcattacccatacc 37525849  T
Q  448 tccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatca 547  Q
    ||||   |||||||||||||| || |||        | || |||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  37525848 tcct---tcacatttcactcataagcataaaaaat-ggccttgactcttctccttcccgctaaaactttcttcattctcacccctccaaaatcatcatca 37525753  T
Q  548 tctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatat 641  Q
    |||| |||||||||||||| | |||||||| ||||||||| |||||||||||||||||| |||||| ||||||||||| ||| ||||| |||||    
T  37525752 tctctggcgattctcacgtctgtgaagtttttgtgttcggttgtggttaaaggtaacacatttcctatagtttatcaagtttctgtgtacatat 37525659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 154 - 648
Target Start/End: Original strand, 32822361 - 32822861
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    |||||||||||||| || ||||||||||||||| || || |||||| |||||||||||||||   | | |||||| |||| ||||||||||||||| |||    
T  32822361 gagtgaaccatcaacttcgtccttgaatttttatggatcggccaaattcatccctcaattatttaaaatatcaacttagtccctgaatttgtcagatgtc 32822460  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||| |||||| ||||||| ||||||| ||| ||||||||||||  ||||||| || |||||||||| | |||||| ||| |||||||||    
T  32822461 catcaaaaaggtccttccgtccaagtgctttgttagc-atgctgatctgtcgccatgcatgctttgttgtcttgtacgcgtggcaagaaggaagccacgt 32822559  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttca------annnnnnnatgttattccaattttgcccctatattacccatac 446  Q
    ||||| ||||||||||||| ||| |||||||| | || ||||||||||| |               || | |||| |||||||||||| |||||||||||    
T  32822560 gttcagggactaatttgattgaatttgaaaaagttcaattttcactttttagtttatttttttttctgcttttcccattttgcccctacattacccatac 32822659  T
Q  447 ctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatc 546  Q
    ||||||| |||||||||| ||||||| ||       ||||  ||||||||||||||||| |||||||||| | ||||||| ||||| |||||||||||||    
T  32822660 ctccttcttcacatttcagtcagaaaaat-aaaaaacgtcattgacccttctccttcccactaaaactttattcattctcgcctcttcaaaatcatcatc 32822758  T
Q  547 atctccggcgattctcacgtttttgaagtttctgtgttcggctgtggtt---aaaggtaacacctttcctttagtttatcaaatttatgtgttcatattc 643  Q
    ||||||| ||||||| ||||||||||||||||||| ||||| |||  ||   ||||||||| | |||||| | ||||||||| ||||||||| | |||||    
T  32822759 atctccgacgattctgacgtttttgaagtttctgtattcggttgt--ttcaaaaaggtaacgcttttcctattgtttatcaagtttatgtgtccgtattc 32822856  T
Q  644 accct 648  Q
    |||||    
T  32822857 accct 32822861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 154 - 603
Target Start/End: Complemental strand, 38882921 - 38882465
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| ||||||||||||| |||| || | |||| |||||| |||| ||||||| | |||||  || | |||||||||||||||||||    
T  38882921 gagtgaaccatcaaattcgtccttgaattttcacggatcggtcaaattcatccttcaactatgcgagatatcaatttaatccctgaatttgtcagacgtc 38882822  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| ||||| ||||||||||| |||||||| ||||||||||||||||||||| || |||||||||| |||||||||| | |||||| ||| ||| |||||    
T  38882821 cataaaaaatgtccctccgtccaagtgctccgttagccatgttgatctgtcgtcctgcatgctgtgttgtcttgtactcgtggcaacaaggaagtcacgt 38882722  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttca-------annnnnnnatgttattccaattttgcccctatattacccata 445  Q
    ||||| |||| ||||| |||||||| |||||||| ||||||||||||||||                || | |||  ||||||||||| |||||||||||    
T  38882721 gttcaaggaccaatttaatggaagtggaaaaattacagttttcacttttcagtttaatttttttttctgcttttctcattttgcccctgtattacccata 38882622  T
Q  446 cctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcat 545  Q
    ||||||||| ||| ||||||||||||||||       ||||  ||||||||||||||||| ||||| | ||||||||| ||||| |||||||||||||||    
T  38882621 cctccttccccacttttcactcagaaacat-aaaaaacgtcattgacccttctccttcccactaaagccttctccattttcaccgctccaaaatcatcat 38882523  T
Q  546 catctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaa 603  Q
    ||||||  ||||| |||  |||||| |||||  |||||| | ||||||| ||||||||    
T  38882522 catctcttgcgatcctctagtttttcaagttgttgtgtttgtctgtggtaaaaggtaa 38882465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 204 - 646
Target Start/End: Complemental strand, 33750458 - 33750017
Alignment:
Q  204 tccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtccattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgt 302  Q
    |||||||||||||||| | |||||| |||| |||||||||||||||| | ||| ||||||||||||||||| ||||||||||||||| ||||||||||||    
T  33750458 tccctcaattatgcgaaatatcaacttagtccctgaatttgtcagacattcatcaaaaaggtccctccgtccaagtgctctgttagcgatgttgatctgt 33750359  T
Q  303 cgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaagttgaaaaattccagttttcacttttc 402  Q
    || |  ||||| |||| |||||||||| | |||||| ||| |||||| ||||||| |||| |||||||| ||| | |||||  |  ||||||||||||||    
T  33750358 cgtcttgcatgttgtgttgtcttgtacgcgtggcaagaaggaagccatgtgttcagggacgaatttgattgaattggaaaatgttgagttttcacttttc 33750259  T
Q  403 a----annnnnnnatgttattccaattttgcccctatattacccatacctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttct 498  Q
    |    |        || | |||| |||||||||||  |||||||||||||||||| |||||||||       |||||       ||||| |||||||| |    
T  33750258 agtttatttttttttgcttttcccattttgcccctgcattacccatacctccttcttcacatttc-----tgaacat-caaaaacgtccttgaccctttt 33750165  T
Q  499 ccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaa 598  Q
     |||| ||||||||||| || |||| ||||| |||||||||||||||||||||||  |||||| || |||||||||||| ||||||| ||| || |||||    
T  33750164 tcttctcgctaaaacttccttcattttcacccctccaaaatcatcatcatctccgatgattctgacatttttgaagtttgtgtgttctgctctgattaaa 33750065  T
Q  599 ggtaacacctttcctttagtttatcaaatttatgtgttcatattcacc 646  Q
    ||||||||||||||| | ||||||||| ||| ||||||  ||||||||    
T  33750064 ggtaacacctttcctgttgtttatcaagtttttgtgtttgtattcacc 33750017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 154 - 471
Target Start/End: Complemental strand, 33160272 - 33159952
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    |||| |||||||||||| ||||||||||||| || |||| |||||| |||||||||||||||| || | |||||| ||||  |||||||||||||||| |    
T  33160272 gagtaaaccatcaaattcgtccttgaattttcacaggtcggccaaattcatccctcaattatgtgaaatatcaacttagtctctgaatttgtcagacgcc 33160173  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| ||||||||||||||  | ||||||||||||||||||| ||||||||||||| ||||| |||| |||||| ||||| |||||| |||||   |||||    
T  33160172 catcaaaaaggtccctccacctaagtgctctgttagccatgctgatctgtcgccctgcatgttgtgttgtcttatacacgtggcaagaagaagctcacgt 33160073  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttca--annnnnnnatgttattccaattttgcccctatattacccatacctcc 450  Q
    ||||| ||||||||||||| ||| | ||||||||| |||||||||||||||           || | |||| |||||||||||  || ||||||||||||    
T  33160072 gttcaaggactaatttgattgaattggaaaaattcaagttttcacttttcagtttttttttctgcttttcctattttgcccctgcatcacccatacctcc 33159973  T
Q  451 ttcctcacatttcactcagaa 471  Q
    ||| |||||||||||||||||    
T  33159972 ttcttcacatttcactcagaa 33159952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 151 - 401
Target Start/End: Original strand, 1320614 - 1320865
Alignment:
Q  151 atcgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagac 250  Q
    |||||||||||||||||||| |||||| |||||| ||||||| || ||| ||||||||||||||||| | | |||||| |||| ||||||||||||||||    
T  1320614 atcgagtgaaccatcaaatttgtccttaaattttcacgggtcggctaaattcatccctcaattatgcaaaatatcaacttagtccctgaatttgtcagac 1320713  T
Q  251 gtccattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagcca 349  Q
    |||||| || ||||||| ||||| |||||| || || ||||||| |||  |||||||| ||||||| || |||||||||||| |||||| ||| ||||||    
T  1320714 gtccataaataaggtccttccgtccaagtgttccgtcagccatggtgacatgtcgccctgcatgctatgttgtcttgtacacgtggcaagaaggaagcca 1320813  T
Q  350 cgtgttcacggactaatttgatggaagttgaaaaattccagttttcactttt 401  Q
    |||||||| ||||||||||||| ||| |  ||||| | ||||||||||||||    
T  1320814 cgtgttcaaggactaatttgattgaattgaaaaaagttcagttttcactttt 1320865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 154 - 648
Target Start/End: Original strand, 31821418 - 31821902
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    |||||||| |||||||| |||| |||||||| ||  ||| | |||  || |||||||||||||||| | |||||| |||| || |||||| |||||||||    
T  31821418 gagtgaacaatcaaattcgtccctgaattttcacacgtcggtcaacttcgtccctcaattatgcgaaatatcaacttagtcccagaatttatcagacgtc 31821517  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| ||||||||||||||||| |||| ||||||||||| || |||||||||| |  ||||| |||| |||||||||         | ||| |||||||||    
T  31821518 catcaaaaaggtccctccgtccaagtcctctgttagccttgctgatctgtcgtcttgcatgatgtgttgtcttgta---------agaaggaagccacgt 31821608  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnnatgt----tattccaattttgcccctatattacccatacct 448  Q
    ||||| ||||||||||||| ||| ||||||||||  ||||||||| |||||         | |    | |||| ||||||||| |  ||||||||||| |    
T  31821609 gttcagggactaatttgattgaa-ttgaaaaatttgagttttcacatttcagtttatttttttctccttttcccattttgcccttgcattacccatacat 31821707  T
Q  449 ccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcat 548  Q
    ||||| ||||||||||      |||||        |||| |||||||||| |||  ||||||||||| ||||||| ||||| ||||||||||||||||||    
T  31821708 ccttcttcacatttcag-----aacataaaaaat-gtccttgacccttcttcttatcgctaaaacttcctccattttcacccctccaaaatcatcatcat 31821801  T
Q  549 ctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggt-aacacctttcctttagtttatcaaatttatgtgttcatattcaccc 647  Q
    ||||||||||||| || |||||||||||| ||||||||| |||| |||||||| ||| |||||||| | ||||||||| ||| ||||||| |||||||||    
T  31821802 ctccggcgattctgacatttttgaagtttgtgtgttcggttgtgattaaaggtaaacgcctttcctgttgtttatcaagtttttgtgttcgtattcaccc 31821901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 154 - 529
Target Start/End: Complemental strand, 462494 - 462114
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| ||| |||||||||||| | || |||||| |||||| |||||||||||| | |||||| |||| | ||||||||||| |||||    
T  462494 gagtgaaccatcaaattcgtcattgaatttttacagatcggccaaattcatccgtcaattatgcgaaatatcaacttagtccttgaatttgtcaaacgtc 462395  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||| ||||||| | |||||||||||||||||||| |||| |||||||  ||||| |||| | |||| ||||| |||||| ||| ||||   ||    
T  462394 catcaaaaagatccctccatccaagtgctctgttagccatgctgatttgtcgccgtgcatgttgtgttatcttatacacgtggcaagaaggaagc--agt 462297  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttca-------annnnnnnatgttattccaattttgcccctatattacccata 445  Q
    ||||| ||||||||||||| ||| |||||||| | ||||||||||| ||||                || | || | |||||||||||   |||||||||    
T  462296 gttcaaggactaatttgattgaatttgaaaaagttcagttttcactcttcagtttatttttttcttctgctttttccattttgcccctgcgttacccata 462197  T
Q  446 cctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacc 529  Q
    |||||||| || || |||||||||||||||       ||||  |||||||||||||||||||||||||||||||||||||||||    
T  462196 cctccttcttcgcagttcactcagaaacat-aaagaacgtcattgacccttctccttcccgctaaaactttctccattctcacc 462114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 154 - 404
Target Start/End: Original strand, 8654500 - 8654750
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    |||||||||||||| ||||||  |||||||||||| ||| | |||| || | |||||||||||||| | ||||   || ||| ||||||| |||||||||    
T  8654500 gagtgaaccatcaatttagtctctgaatttttacgagtcggtcaaattcgttcctcaattatgcgaaatatcatt-taattcttgaatttatcagacgtc 8654598  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||| |||||||||||| |||||||| |||||||||| |||  |||||||| ||||||  || |||||||||||| |||||| ||| ||||||| |    
T  8654599 catcaaaagggtccctccgtccaagtgctccgttagccatgctgacatgtcgccctgcatgcaatgttgtcttgtacacgtggcaagaaggaagccacat 8654698  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaa 404  Q
    ||||| ||||||||||||| ||| | |||||| | || ||||||||||||||    
T  8654699 gttcaaggactaatttgattgaattggaaaaagttcacttttcacttttcaa 8654750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 489 - 625
Target Start/End: Original strand, 8654837 - 8654972
Alignment:
Q  489 tgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggcgattctcacgtttttgaagtttctgtgttcggc 588  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||| || ||||||||||| ||||||||| |    
T  8654837 tgactcttctccttcccgctaaaactttctccattctcacccctccaaaatcatcatcatctcc-gcaattctgacatttttgaagttcctgtgttcgac 8654935  T
Q  589 tgtggttaaaggtaacacctttcctttagtttatcaa 625  Q
    |||| | ||||||||| |||||| ||| |||||||||    
T  8654936 tgtgatcaaaggtaacgcctttcattttgtttatcaa 8654972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 152 - 404
Target Start/End: Complemental strand, 31201269 - 31201016
Alignment:
Q  152 tcgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacg 251  Q
    |||||||||||||||| ||||||| |||||||| ||||||| |||||| || ||| |||||||||||| | |||||  || | ||||||||| |||||||    
T  31201269 tcgagtgaaccatcaatttagtccctgaattttcacgggtcggccaaattcgtccatcaattatgcgaaatatcaatttaatccctgaatttatcagacg 31201170  T
Q  252 tccattaaaaaggtccctccgtcaa-gtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccac 350  Q
    ||||| |||||||||||||||| || | |||| |||||||||| |||  |||||||  ||||| |||| |||||||||  | |||||| ||| ||| ||     
T  31201169 tccatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgccttgcatgatgtgttgtcttgtatgcgtggcaagaaggaagtcat 31201070  T
Q  351 gtgttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaa 404  Q
    ||||||| |||| |||||||| ||  | |||||| | || |||||| |||||||    
T  31201069 gtgttcagggacgaatttgattgatttggaaaaagttcacttttcatttttcaa 31201016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 421 - 558
Target Start/End: Complemental strand, 11721618 - 11721481
Alignment:
Q  421 caattttgcccctatattacccatacct-ccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctc 519  Q
    ||||||| ||||| |||||||||||||| || |  ||||||||||||| || ||||       ||||||||| | ||||||||||||||||||| ||| |    
T  11721618 caattttacccctctattacccataccttccataatcacatttcactcggacacatcaaata-cgtccctgatctttctccttcccgctaaaaccttcac 11721520  T
Q  520 cattctcacctctccaaaatcatcatcatctccggcgat 558  Q
    | |  ||||||||||||||||||||||||||||||||||    
T  11721519 cttcttcacctctccaaaatcatcatcatctccggcgat 11721481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 151 - 253
Target Start/End: Complemental strand, 25373716 - 25373614
Alignment:
Q  151 atcgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagac 250  Q
    |||||||||| |||||| ||  |||||||||||| |||  || |||||| |||| |||||||||||||| | |||||| || ||||||||||||||||||    
T  25373716 atcgagtgaatcatcaagttcatccttgaattttcacgcatcggccaaattcattcctcaattatgcgaaatatcaacttaattcctgaatttgtcagac 25373617  T
Q  251 gtc 253  Q
    |||    
T  25373616 gtc 25373614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 151 - 253
Target Start/End: Complemental strand, 25707395 - 25707293
Alignment:
Q  151 atcgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagac 250  Q
    |||||||||| |||||| ||  ||||| ||||||||||  || |||||| ||||||||||||||||||| | |||||| || | ||||||||||| ||||    
T  25707395 atcgagtgaatcatcaagttcatccttaaatttttacgcatcggccaaattcatccctcaattatgcgaaatatcaacttaatccctgaatttgtgagac 25707296  T
Q  251 gtc 253  Q
    |||    
T  25707295 gtc 25707293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 495 - 552
Target Start/End: Complemental strand, 31200930 - 31200873
Alignment:
Q  495 ttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctcc 552  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||    
T  31200930 ttctctttcccgctaaaacgttctccattgtcacccctccaaaatcatcatcatctcc 31200873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 495 - 555
Target Start/End: Original strand, 9184734 - 9184794
Alignment:
Q  495 ttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggc 555  Q
    ||||||||||||||||||| |||  |||  |||||||||||||||||||||||||||||||    
T  9184734 ttctccttcccgctaaaaccttcatcatcttcacctctccaaaatcatcatcatctccggc 9184794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 375
Target Start/End: Original strand, 9184383 - 9184605
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||| |||||| || ||||||||||||  |||  || |||||| || || | ||| || |||| | |||||  |||| |||||||||||||||||||    
T  9184383 gagtgaatcatcaatttcgtccttgaatttgcacgaatcggccaaattcgtcgcccaactacgcgaaatatcaaattagtccctgaatttgtcagacgtc 9184482  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
     ||  ||| ||||||||||| ||| ||||   ||||   || ||||||||||||| ||||| |||| |||||||||||  || ||| ||| || ||||||    
T  9184483 gatcgaaatggtccctccgtccaaatgcttcattagtgctgctgatctgtcgccctgcatgatgtgttgtcttgtacatgtgtcaacaaggaatccacgt 9184582  T
Q  353 gttcacggactaatttgatggaa 375  Q
    || ||  ||| ||||||||||||    
T  9184583 gtacaaagaccaatttgatggaa 9184605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 38881429 - 38881493
Alignment:
Q  155 agtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcga 219  Q
    |||||| ||||||||| ||||||||||||| |||  || |||||| |||||||||||||||||||    
T  38881429 agtgaatcatcaaattcgtccttgaattttcacgaatcagccaaattcatccctcaattatgcga 38881493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 40019156 - 40019247
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    ||||||| |||||| || ||| ||||||||||||||||| |||||  || |||||||||||||||| | |||||  || | |||||||||||    
T  40019156 gagtgaatcatcaacttcgtctttgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgt 40019247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 461184 - 461238
Alignment:
Q  162 catcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatg 216  Q
    |||||| || ||||||||||||| ||||||| |||||| ||||||||||||||||    
T  461184 catcaacttcgtccttgaattttcacgggtcggccaaattcatccctcaattatg 461238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 33748331 - 33748423
Alignment:
Q  153 cgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    |||||||| |||||| || |||| |||||||| ||||||| |||||  || ||| |||||||||||| | |||||  || |||||||||||||    
T  33748331 cgagtgaatcatcaacttcgtccctgaattttcacgggtcggccaacttcgtccttcaattatgcgaaatatcaatttaattcctgaatttgt 33748423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 36646814 - 36646865
Alignment:
Q  82 ttgtttgggtgaatgaaaagcactttcaaaaaactcagttttaagaccaaaa 133  Q
    ||||||||||||||||||||| | | || ||||||||||||| |||||||||    
T  36646814 ttgtttgggtgaatgaaaagcgcgtccagaaaactcagttttgagaccaaaa 36646865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 13108325 - 13108259
Alignment:
Q  309 gcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaa 375  Q
    |||||||||| |||||||||||| || ||| |||  |||||||||| || ||||||| |||||||||    
T  13108325 gcatgctgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaa 13108259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 375
Target Start/End: Original strand, 38547383 - 38547449
Alignment:
Q  309 gcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaa 375  Q
    |||||||||| |||||||||||| || ||| |||  |||||||||| || ||||||| |||||||||    
T  38547383 gcatgctgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaa 38547449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 401
Target Start/End: Complemental strand, 28433691 - 28433611
Alignment:
Q  323 cttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaagtt--gaaaaattccagttttcactttt 401  Q
    ||||||||| ||| |||||| ||||||||||| || ||||||| |||||||||  |  ||||||||  |||||||||||||    
T  28433691 cttgtacacgtgggaaaaaggaagccacgtgtacatggactaaattgatggaaaatacgaaaaattttagttttcactttt 28433611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 37524876 - 37524949
Alignment:
Q  172 gtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    ||||||||||||||||||||| | |||| |||||||| ||||||| || | ||||| ||| |  ||||||||||    
T  37524876 gtccttgaatttttacgggtcggtcaaattcatcccttaattatgtgaaatatcaatctaatctctgaatttgt 37524949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 154 - 642
Target Start/End: Original strand, 37417273 - 37417771
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||| ||| ||||||||||||| | ||||| |||||| ||||||||||||||||||| | |||||| |||| |||||||||||||||||||    
T  37417273 gagtgaaccatcatattcgtccttgaattttcatgggtcggccaaattcatccctcaattatgcgaaatatcaacttagtccctgaatttgtcagacgtc 37417372  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||||| ||| ||||||||| |||||||||| |||||||| |||| |||||||||| |||||||||||| |||||| ||| |||||||||    
T  37417373 catcaaaaaggtcccttcgtccaagtgctccgttagccatgctgatctgttgccctgcatgctgtgttgtcttgtacacgtggcaagaaggaagccacgt 37417472  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnna----------tgttattccaattttgcccctatattaccc 442  Q
    ||||| |||||||||| || ||  | |||||| |||| |||||| ||||||        |          || | |||| ||||||||| |  |||||||    
T  37417473 gttcaaggactaatttaattgatttggaaaaagtccaattttcaattttcagtttaattattttttcttctgcttttcccattttgcccgtgcattaccc 37417572  T
Q  443 atacctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcat 542  Q
    |||| |||| ||||||||||| |||||||||||       ||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  37417573 atacttcctccctcacatttctctcagaaacat-caaaaacgtccttgactcttctccttcccgctaaaactgtctccattctcacctctccaaaaccat 37417671  T
Q  543 catcatctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatatt 642  Q
    |||||||| || ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| || |||||||| ||| ||||||| ||||    
T  37417672 catcatcttcgacgattctcacgtttttgaagttgttgtgttcggctgtggttaaaggtaacacctttcctctaatttatcaagtttttgtgttcgtatt 37417771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 154 - 648
Target Start/End: Complemental strand, 29909784 - 29909293
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| |||| |||||||| ||| ||| |||||  |  |||||||||||||||| | |||||  |||| ||| |||||||||||||||    
T  29909784 gagtgaaccatcaaatttgtccctgaattttcacgcgtcggccaactttgtccctcaattatgcgaaatatcaatttagtcccttaatttgtcagacgtc 29909685  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||||||||||   ||||| |||| |||||||||| | |||||| ||| |||||||||    
T  29909684 catcaaaaaggtccctccgtccaagtgctctgttagccatgttgatctgtcgcgttgcatgttgtgttgtcttgtacgcgtggcaagaaggaagccacgt 29909585  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaa--nnnnnnnatgttattccaattttgcccctatattacccatacctcc 450  Q
    ||| | ||||||||||||| ||| |||||||| |  ||||||||||||||||          || | |||| ||||| ||| |  |||||||||||||||    
T  29909584 gttaagggactaatttgattgaatttgaaaaagttgagttttcacttttcaatttttttttctgcttttcccatttttcccatgcattacccatacctcc 29909485  T
Q  451 ttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatct 550  Q
    ||| ||||||||||      |||||       ||||| |||||||||| |||||||||||||||| ||||||| ||||| ||||||||| ||||||||||    
T  29909484 ttcttcacatttca-----gaacat-caaaaacgtccttgacccttcttcttcccgctaaaacttcctccattttcacccctccaaaattatcatcatct 29909391  T
Q  551 ccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcaccct 648  Q
    |||| |||||| ||||||||||||||| |||||||| ||||| |||||||||||  ||||||| | ||||||||| ||| ||||||| ||||||||||    
T  29909390 ccggtgattctgacgtttttgaagtttgtgtgttcgactgtgattaaaggtaacgtctttcctgttgtttatcaagtttctgtgttcgtattcaccct 29909293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 154 - 603
Target Start/End: Original strand, 15432328 - 15432779
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    |||||||||||||||||  |||||||||||||| ||||| | |||| ||||||||||||||||||| | |||||  ||||  ||||||||||||||||||    
T  15432328 gagtgaaccatcaaatttatccttgaatttttatgggtcggtcaaattcatccctcaattatgcgaaatatcaatttagtctctgaatttgtcagacgtc 15432427  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||| | | ||| |||||||||| |||| |||| |||  |||||||| ||||| |||| |||||||||||| |||||| ||| ||| || ||    
T  15432428 catcaaaaaggttcattcgtccaagtgctctattagtcatgctgacatgtcgccctgcatgttgtgttgtcttgtacacgtggcaagaaggaagtcatgt 15432527  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttca---annnnnnnatgttattccaattttgcccctatattacccatacctc 449  Q
    ||||| ||||||||||||| ||| | |||||| | ||||||||||||||||            || | |||| |||||||||||| ||||| |||||| |    
T  15432528 gttcaaggactaatttgattgaattggaaaaagttcagttttcacttttcagtttattttttctgcttttcccattttgcccctacattactcatacc-c 15432626  T
Q  450 cttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatc 549  Q
    |||| |||||||||| ||||||||||       | ||  || || | |||||||||||| |||||||| ||||||||||| |||||||||||||||||||    
T  15432627 cttcttcacatttcagtcagaaacat-caaaaacatctttggccttcctccttcccgctcaaactttcaccattctcacccctccaaaatcatcatcatc 15432725  T
Q  550 tccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaa 603  Q
     ||||||||||| |||||||||||||||||||||||||||||  ||||||||||    
T  15432726 accggcgattctgacgtttttgaagtttctgtgttcggctgtaattaaaggtaa 15432779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 154 - 648
Target Start/End: Original strand, 42001610 - 42002107
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| ||||||||||||||||||||   ||||| | ||||||| ||||||||| | |||||  || | | |||||||||||||| ||    
T  42001610 gagtgaaccatcaaattcgtccttgaatttttacgggttgtccaaatttatccctctattatgcgaaatatcaatttaatccttgaatttgtcagacatc 42001709  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
     || |||||||| | ||| || |||||||  ||||||||||||||| |||||||| ||||| || | |||||||||||| || ||| ||| ||| |||||    
T  42001710 -atcaaaaaggttcatccatccaagtgcttcgttagccatgttgatgtgtcgccctgcatgttgagttgtcttgtacacgtgacaagaaggaagtcacgt 42001808  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnnatgt------tattccaattttgcccctatattacccatac 446  Q
    ||||| ||||| ||||||| ||| | |||||| | || ||||||||||| |         | |      | |||| |||||||| ||  |||||||||||    
T  42001809 gttcaaggactgatttgattgaattggaaaaaattca-ttttcactttttagacttattttttctctgcttttcccattttgcctctgcattacccatac 42001907  T
Q  447 ctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatc 546  Q
    ||||||| |||||||||| ||||||||||       | ||  ||| ||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||    
T  42001908 ctccttcttcacatttcagtcagaaacatcaaaaa-catcattgatccttctccttcccgctaaaactttccccattatcacccctccaaaa-catcatc 42002005  T
Q  547 atctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcacc 646  Q
    ||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||| ||   |||||| ||||||||    
T  42002006 atctccggcgattattacgtttttgaagtttctgtgttcggctgtgattaaaggtaacacctttcctgttgtttatcaagttcccgtgttcgtattcacc 42002105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 154 - 642
Target Start/End: Complemental strand, 39521 - 39035
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| ||||  ||||||| ||| ||| |||||  |  | |||||||||||||| | |||||| |||| ||||||||||||||||||     
T  39521 gagtgaaccatcaaatttgtccccgaattttcacgcgtcagccaactttgtacctcaattatgcgaaatatcaacttagtccctgaatttgtcagacgtt 39422  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| ||||||||||| ||||| ||||| || |||||||||| |||| ||||| |  |||||||||| |||||||||| | |||||| ||| |||||||||    
T  39421 catcaaaaaggtccccccgtccaagtgttccgttagccatgctgatatgtcgtcttgcatgctgtgttgtcttgtacgcgtggcaagaaggaagccacgt 39322  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttca---annnnnnnatgttattccaattttgcccctatattacccatacctc 449  Q
    ||||| |||| |||||||| ||| | |||||  |  |||||||||||||||            || | |||  |||||||||||  ||||||||||||||    
T  39321 gttcagggacaaatttgattgaattggaaaatgttgagttttcacttttcagtttattttttctgcttttctcattttgcccctgcattacccatacctc 39222  T
Q  450 cttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatc 549  Q
    |||| ||||||||||      |||||       ||||| |||||||||| |||| |||||| |||| ||||||| ||||| ||||||||||||||||||     
T  39221 cttcttcacatttca-----gaacat-aaaaaacgtccttgacccttcttcttctcgctaatacttcctccattttcacccctccaaaatcatcatcatg 39128  T
Q  550 tccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatatt 642  Q
    |||| ||||||| |  |||||||||||| |||||||||||||| |||||||||||||||||||| | ||||||||| ||| ||||||| ||||    
T  39127 tccgacgattctgaaatttttgaagtttgtgtgttcggctgtgattaaaggtaacacctttcctgttgtttatcaagtttttgtgttcgtatt 39035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 154 - 645
Target Start/End: Complemental strand, 92470 - 91981
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| |||| |||||||| |||  || | |||  || | |||||||||||||| | |||||| ||||   ||||||||||||||||     
T  92470 gagtgaaccatcaaatt-gtccctgaattttcacgcatcagtcaacttcgtacctcaattatgcgaaatatcaacttagtctttgaatttgtcagacgtt 92372  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| ||||||||||||| ||| |||||||| |||||||||| |||| ||||| |  |||||||||| ||||||||||   |||||| ||| |||||||||    
T  92371 catcaaaaaggtccctcagtccaagtgctccgttagccatgctgatatgtcgtcttgcatgctgtgttgtcttgtacgtgtggcaagaaggaagccacgt 92272  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnnat---gttattccaattttgcccctatattacccatacctc 449  Q
    ||||| |||| |||||||| ||| | |||||  |  |||||||||||||||         |   | | |||  ||||||||| |  ||||||||||||||    
T  92271 gttcagggacaaatttgattgaattggaaaatgttgagttttcacttttcagtttattttttctgcttttctcattttgcccttgcattacccatacctc 92172  T
Q  450 cttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatc 549  Q
    |||| ||||||||||      |||||       ||||| |||||||||| |||| |||||| |||| ||||||| ||||| |||||||||||||||||||    
T  92171 cttcttcacatttcag-----aacataaaaaaacgtccttgacccttcttcttctcgctaatacttcctccattttcacccctccaaaatcatcatcatc 92077  T
Q  550 tccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcac 645  Q
    |||| ||||||| || |||||||||||| |||||||||||||| ||||||||||||||||| || | ||||||||| ||| ||||||| |||||||    
T  92076 tccgacgattctgacatttttgaagtttgtgtgttcggctgtgattaaaggtaacaccttttctgttgtttatcaagtttttgtgttcgtattcac 91981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 155 - 535
Target Start/End: Original strand, 25619661 - 25620049
Alignment:
Q  155 agtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtcc 254  Q
    |||||||||||||||| ||||||||||||||| ||||| | |||| ||||||||||||||||| | | |||||| |||| ||||||||||||| | ||||    
T  25619661 agtgaaccatcaaattcgtccttgaatttttatgggtcggtcaaattcatccctcaattatgcaaaatatcaacttagtccctgaatttgtcatatgtcc 25619760  T
Q  255 attaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtg 353  Q
    || |||||||||||||| | ||||||||| |||||||||||||||||||||| | ||||| || | |||||| ||||| |||||| ||  ||||||| ||    
T  25619761 atcaaaaaggtccctccatccaagtgctccgttagccatgttgatctgtcgctctgcatgttgcgttgtcttatacacgtggcaagaaagaagccacatg 25619860  T
Q  354 ttcacggactaatttgatggaagttgaaaaattccagttttcacttttca--------annnnnnnatgttattccaattttgcccctatattacccata 445  Q
    |||| ||||||||||||| ||| |  ||||| |  ||||||||||||| |                 || | |||| |||||||||||  ||||||||||    
T  25619861 ttcaaggactaatttgattgaattgaaaaaagtttagttttcactttttagtttattttttctcttctgcttttcccattttgcccctgcattacccata 25619960  T
Q  446 cctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctcca 535  Q
    |||||||| |||||||||||||||||||||       ||||| ||||||||||||||  || |||||||||||||||||||||| |||||    
T  25619961 cctccttcttcacatttcactcagaaacat-aaaaaacgtccttgacccttctccttttcgataaaactttctccattctcacccctcca 25620049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 418 - 642
Target Start/End: Original strand, 42879585 - 42879809
Alignment:
Q  418 ttccaattttgcccctatattacccatacctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttc 517  Q
    |||| ||||||||| |  ||||||||||| |||||||||||||||| |||||||||||       ||||| |||| |||||| |||  ||||||||||||    
T  42879585 ttcccattttgcccatgcattacccatacttccttcctcacatttctctcagaaacataaaaaaacgtccttgactcttctctttcttgctaaaactttc 42879684  T
Q  518 tccattctcacctctccaaaatcatcatcatctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttag 617  Q
    ||||||||||||||||||||| ||||||||||| |  ||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||| ||     
T  42879685 tccattctcacctctccaaaaccatcatcatcttcaacgattctcacgtttttgaagttgttgtgttcggttgtggttaaaggtaacacctttcctctaa 42879784  T
Q  618 tttatcaaatttatgtgttcatatt 642  Q
    |||||||| ||| ||||||| ||||    
T  42879785 tttatcaagtttctgtgttcgtatt 42879809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 158 - 358
Target Start/End: Original strand, 42879360 - 42879560
Alignment:
Q  158 gaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtccatt 257  Q
    ||||||||||||| |||||| |||||||||||||| | |||| |||||||| |||||||||| | |||||| ||||   ||||||||||||||||||||     
T  42879360 gaaccatcaaattcgtccttaaatttttacgggtcggtcaaattcatcccttaattatgcga-aaatcaacttagtctatgaatttgtcagacgtccatc 42879458  T
Q  258 aaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttc 356  Q
    |||||||||||||||| |||||| || ||||| |||| |||| |||||||| |||||||||| |||||||||||| || ||| ||| ||| |||||||||    
T  42879459 aaaaaggtccctccgtccaagtgttccgttagtcatgctgatatgtcgccctgcatgctgtgttgtcttgtacacgtgacaagaaggaagtcacgtgttc 42879558  T
Q  357 ac 358  Q
    ||    
T  42879559 ac 42879560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 154 - 552
Target Start/End: Original strand, 15372499 - 15372902
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    |||||||||||||| ||||||| |||||||| ||||||| |||||| ||  ||||||||||||| | | |||||  || | ||||||||| |||||||||    
T  15372499 gagtgaaccatcaatttagtccctgaattttcacgggtcggccaaattcgcccctcaattatgcaaaatatcaatttaatccctgaatttatcagacgtc 15372598  T
Q  254 cattaaaaaggtccctccgtcaa-gtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||||||||| || | |||| |||||||||| | |  |||||||  ||||| |||| |||||||||| | |||||| ||| |||||||||    
T  15372599 catcaaaaaggtccctccgttaacgggctccgttagccatgctaacatgtcgccttgcatgttgtgctgtcttgtacgcgtggcaagaaggaagccacgt 15372698  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttc-----aannnnnnnatgttattccaattttgcccctatattacccatacc 447  Q
    ||||| |||| |||||||| ||  | |||||| | || |||||| |||||     ||        || | |||| ||||| |||||  |||||  || ||    
T  15372699 gttcagggacgaatttgattgatttggaaaaagttcacttttcatttttcaatttaattttttcgtgcttttcccattttacccctgcattacatattcc 15372798  T
Q  448 tccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatca 547  Q
    |||||| |||||||| ||||||||||||       | ||  |||| |||||||||||||||||||| ||||||||| ||| | |||||||||||||||||    
T  15372799 tccttcttcacattttactcagaaacat-caaaaacatcattgactcttctccttcccgctaaaacgttctccattgtcaaccctccaaaatcatcatca 15372897  T
Q  548 tctcc 552  Q
    |||||    
T  15372898 tctcc 15372902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 154 - 552
Target Start/End: Original strand, 41706539 - 41706933
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    |||||||||||||| ||||| | |||||||| ||||||| | |||| || |||||||||||||||| | |||||  || | ||||||||| ||  |||||    
T  41706539 gagtgaaccatcaatttagttcctgaattttcacgggtcggtcaaattcgtccctcaattatgcgaaatatcaatttaatccctgaatttatcgaacgtc 41706638  T
Q  254 cattaaaaaggtccctccgtcaa-gtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||||||||| || | |||| |||||||||| |||  |||||||  |||||||||| |||||||||| | |||||| ||| ||| |||||    
T  41706639 catcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgccttgcatgctgtgctgtcttgtacgcgtggcaagaaggaagtcacgt 41706738  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttc-----aannnnnnnatgttattccaattttgcccctatattacccatacc 447  Q
    ||||| |||| |||||||| ||  | |||||| | || |||||| |||||     ||        || | |||  |||||||||||  ||| |  || ||    
T  41706739 gttcagggacgaatttgattgatttggaaaaagttcacttttcatttttcaatttaattttttcgtgcttttctcattttgcccctgcatttcatattcc 41706838  T
Q  448 tccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatca 547  Q
    |||||| |||||||| ||||| |||||          ||| |||| |||||||||||||||||||| ||||||||| ||||| |||||||||||||||||    
T  41706839 tccttcttcacattttactcaaaaaca----------tccttgactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcatca 41706928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 158 - 306
Target Start/End: Original strand, 39560 - 39709
Alignment:
Q  158 gaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtccatt 257  Q
    |||||||||| ||||||| |||||||||||||||| |||||| || |||||||||||||||| | |||||  || | ||||||||| |||| |||| |||    
T  39560 gaaccatcaatttagtccctgaatttttacgggtcggccaaattcgtccctcaattatgcgaaatatcaatttaatccctgaatttatcaggcgtcgatt 39659  T
Q  258 aaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcc 306  Q
    |||||||||||||||| ||||||||  |||||||||| |||  |||||||    
T  39660 aaaaaggtccctccgtccaagtgcttcgttagccatgctgacatgtcgcc 39709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 418 - 552
Target Start/End: Original strand, 39793 - 39926
Alignment:
Q  418 ttccaattttgcccctatattacccatacctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttc 517  Q
    |||| |||||||||||  |||||  || |||||||| |||||||| | ||||||||||       | ||| |||| ||||||||||||||||||||||||    
T  39793 ttcccattttgcccctgcattacatattcctccttcttcacattttagtcagaaacatcaaaaa-catccttgactcttctccttcccgctaaaactttc 39891  T
Q  518 tccattctcacctctccaaaatcatcatcatctcc 552  Q
    |||||||||||| ||||||||||||||||||||||    
T  39892 tccattctcacccctccaaaatcatcatcatctcc 39926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 483 - 552
Target Start/End: Complemental strand, 11315139 - 11315070
Alignment:
Q  483 cgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctcc 552  Q
    ||||||||||| |||||||||| |||||||| |||  |||  ||||||||||||||||||||||||||||    
T  11315139 cgtccctgacctttctccttcctgctaaaaccttcatcatcttcacctctccaaaatcatcatcatctcc 11315070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 484 - 552
Target Start/End: Original strand, 40097883 - 40097951
Alignment:
Q  484 gtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctcc 552  Q
    |||||||||| ||||||||||||||| ||| |||  |||  ||||||||||||||||||||||||||||    
T  40097883 gtccctgacctttctccttcccgctagaaccttcatcatcttcacctctccaaaatcatcatcatctcc 40097951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 483 - 554
Target Start/End: Complemental strand, 4416754 - 4416683
Alignment:
Q  483 cgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccgg 554  Q
    ||||||||||| |||||||| |||||||| | |||  |||  ||||||||||||||||||||||||||||||    
T  4416754 cgtccctgacctttctcctttccgctaaatccttcatcatcttcacctctccaaaatcatcatcatctccgg 4416683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 25665453 - 25665504
Alignment:
Q  82 ttgtttgggtgaatgaaaagcactttcaaaaaactcagttttaagaccaaaa 133  Q
    |||||||| |||||||||||| |||||||||||||||||||| |||||||||    
T  25665453 ttgtttggatgaatgaaaagcgctttcaaaaaactcagttttgagaccaaaa 25665504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 11315383 - 11315339
Alignment:
Q  230 tagttcctgaatttgtcagacgtccattaaaaaggtccctccgtc 274  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||    
T  11315383 tagttcctgaatttgtcagacgtccatcaaaatggtccctccgtc 11315339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 309 - 404
Target Start/End: Complemental strand, 19908234 - 19908138
Alignment:
Q  309 gcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaagttg-aaaaattccagttttcacttttcaa 404  Q
    |||||||||| |||| ||||||| || ||| |||| |||||||||| || ||||||||||||||||| | | |||||||| || ||| |||||||||    
T  19908234 gcatgctgtgttgtcatgtacacgtgtcaacaagacagccacgtgtacaaggactaatttgatggaaatggtaaaaattcgagatttgacttttcaa 19908138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 11022999 - 11022936
Alignment:
Q  312 tgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaa 375  Q
    ||||||| || ||||||||| ||| |||||||||||||||||| || ||||||| |||||||||    
T  11022999 tgctgtgttggcttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgatggaa 11022936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 28246801 - 28246864
Alignment:
Q  312 tgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaa 375  Q
    ||||||| || ||||||||| ||| |||||||||||||||||| || ||||||| |||||||||    
T  28246801 tgctgtgttggcttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgatggaa 28246864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 28248266 - 28248175
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    ||||||| |||||| || |||| |||||||||||||||| |||||  || |||||||||||||||| | |||||  || | |||||||||||    
T  28248266 gagtgaatcatcaacttcgtccctgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgt 28248175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 361445 - 361547
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||| |||||| || ||||||||||||| | |  || ||||||||||||||||||||||| || | |||||  ||||   |||||| ||||||||||    
T  361445 gagtgaatcatcaacttcgtccttgaattttcatgaatcggccaaaatcatccctcaattatgtgaaatatcaaattagtcattgaattcgtcagacgtc 361544  T
Q  254 cat 256  Q
    |||    
T  361545 cat 361547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 41233 - 41168
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcga 219  Q
    ||||||| |||||| || |||| |||||||| ||||||| |||||| || ||||||||||||||||    
T  41233 gagtgaatcatcaacttcgtccctgaattttcacgggtcggccaaattcgtccctcaattatgcga 41168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 17946256 - 17946345
Alignment:
Q  315 tgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaa 404  Q
    |||| |||| |||||||||| ||||||| ||| ||||||| || ||||||| |||||||||    ||||| | |||||||||||||||||    
T  17946256 tgtgttgtcatgtacacatgtcaaaaaggaagtcacgtgtacaaggactaaattgatggaaacgcaaaaaattcagttttcacttttcaa 17946345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 402
Target Start/End: Complemental strand, 10716871 - 10716777
Alignment:
Q  309 gcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaa--gttgaaaaattccagttttcacttttc 402  Q
    ||||| |||| |||||||||||| || ||| ||| ||||||||||| || |||| ||||||||||||  | || |||||| |||||||||||||||    
T  10716871 gcatgttgtgttgtcttgtacacgtgtcaacaaggaagccacgtgtacaaggaccaatttgatggaaatgatg-aaaatttcagttttcacttttc 10716777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 11021533 - 11021624
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    ||||||| |||||| || |||| |||||||| ||||||| |||||  || |||||||||||||||| | |||||  || | |||||||||||    
T  11021533 gagtgaatcatcaacttcgtccctgaattttcacgggtcggccaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgt 11021624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 15373979 - 15373888
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    ||||||| |||||| ||||||| |||||| | || |||| |||||| || | |||||||||||||| | |||||  || |||||||||||||    
T  15373979 gagtgaatcatcaacttagtccctgaattatcacaggtcggccaaattcgttcctcaattatgcgaaatatcaatttaattcctgaatttgt 15373888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 23357523 - 23357574
Alignment:
Q  82 ttgtttgggtgaatgaaaagcactttcaaaaaactcagttttaagaccaaaa 133  Q
    ||||||||||||||||||||  ||| |||||||||||||||| ||| |||||    
T  23357523 ttgtttgggtgaatgaaaagtgcttccaaaaaactcagttttgagatcaaaa 23357574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 28246662 - 28246765
Alignment:
Q  153 cgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgt 252  Q
    ||||||||||||||| || |||| |||||||||| ||||| |||||| || ||||  ||||   ||| | |||||  ||||||||||||||||  |||||    
T  28246662 cgagtgaaccatcaatttcgtccctgaatttttaggggtcggccaaattcgtccccaaatttaacgaaatatcaaaatagttcctgaatttgtttgacgt 28246761  T
Q  253 ccat 256  Q
    ||||    
T  28246762 ccat 28246765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 41708521 - 41708430
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    ||||||| |||||| ||||||  |||||| | ||||||| |||||| || |||||||||||||||| | |||||  || | |||||||||||    
T  41708521 gagtgaatcatcaacttagtctctgaattatcacgggtcggccaaattcgtccctcaattatgcgaaatatcaatttaatccctgaatttgt 41708430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 412 - 550
Target Start/End: Original strand, 20940990 - 20941128
Alignment:
Q  412 atgttattccaattttgcccctatattacccatacctcct-tcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaa 510  Q
    ||||| || ||||||| ||||||| |||||||| ||| || ||||||||||||||||||| ||||        ||| ||||| ||||||||| |||||||    
T  20940990 atgttttttcaattttacccctattttacccattccttctatcctcacatttcactcagacacatcaaacaa-gtctctgactcttctcctttccgctaa 20941088  T
Q  511 aactttctccattctcacctctccaaaatcatcatcatct 550  Q
    ||| ||| | |   ||| |||||||||||||||| |||||    
T  20941089 aaccttcacaaacttcatctctccaaaatcatcaccatct 20941128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 7744205 - 7744294
Alignment:
Q  315 tgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaa 404  Q
    |||| |||| |||||||||| ||||||| ||||||||||| ||  |||||| |||||| ||    ||||| | |||||||||||||||||    
T  7744205 tgtgttgtcatgtacacatgtcaaaaaggaagccacgtgtacaatgactaaattgatgaaaacgcaaaaaattcagttttcacttttcaa 7744294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 42880902 - 42880837
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcga 219  Q
    ||||||| |||||| || |||| |||||||||||||||| | |||| || ||||| ||||||||||    
T  42880902 gagtgaatcatcaacttcgtccctgaatttttacgggtcggtcaaattcgtcccttaattatgcga 42880837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 5e-98; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 154 - 566
Target Start/End: Original strand, 4519376 - 4519785
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    |||||||| |||||||| |||||||||||||||| |||  |||||| ||||||||||||||||||| | |||| | |||    ||||||||| |||| |     
T  4519376 gagtgaacaatcaaattcgtccttgaatttttaccggttggccaaattcatccctcaattatgcgaaatatcagcttagcctttgaatttgttagacatt 4519475  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| ||||||||||||||||| || ||||| |||||||||| ||||||||||||| |||||||||| |||||||||||| |||||||||||||| |||||    
T  4519476 catcaaaaaggtccctccgtccaaatgctccgttagccatgctgatctgtcgccctgcatgctgtgttgtcttgtacacgtggcaaaaagaaagtcacgt 4519575  T
Q  353 gttcacggactaatttgatgga-agttgaaaaattccagttttcacttttcaannnnnnnatgttattccaattttgcccctatattacccatacctcct 451  Q
    ||||| |||||||||||||||| ||| |||||||| ||||||| | ||||           ||||||| ||||||||||| | |||||| ||||||||||    
T  4519576 gttcaaggactaatttgatggatagtggaaaaatttcagtttttagtttt----atttttttgttatttcaattttgcccatgtattactcatacctcct 4519671  T
Q  452 tcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctc 551  Q
    ||||||||||||||||||||||||       | ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4519672 tcctcacatttcactcagaaacat-caaaaacatccttgacccttcttcttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctc 4519770  T
Q  552 cggcgattctcacgt 566  Q
    |||||||| ||||||    
T  4519771 cggcgattgtcacgt 4519785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 154 - 646
Target Start/End: Complemental strand, 44558617 - 44558118
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    |||||||||||||| || ||||||||||||| ||||||| |||||| ||||||||||||||||||| | |||||| |||| |||||||||||||||||||    
T  44558617 gagtgaaccatcaacttcgtccttgaattttcacgggtcggccaaattcatccctcaattatgcgaaatatcaacttagtccctgaatttgtcagacgtc 44558518  T
Q  254 cattaaaaaggtccctccgt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||| ||||| |||||||| ||||||||||| ||||||||| ||  ||||||| || |||||||||| | |||||| ||| |||||||||    
T  44558517 catcaaaaaggtccttccgtccaagtgctatgttagccatgctgatctgtcaccatgcatgctctgttgtcttgtacgcgtggcaagaaggaagccacgt 44558418  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttc------aannnnnnnatgttattccaattttgcccctatattacccatac 446  Q
    ||||| ||||| ||||||| ||| |||||||| | |||||||||||||||                || | |||| ||||| |||||  |||||||||||    
T  44558417 gttcaaggactcatttgattgaatttgaaaaagttcagttttcacttttcggtttttttttctttctgcttttcccatttttcccctgcattacccatac 44558318  T
Q  447 ctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatc 546  Q
    ||||||| | |||||||| ||||||| ||       ||||| ||||||||||||||||| |||||||| | |||||||||||| ||||||||||||||||    
T  44558317 ctccttctttacatttcagtcagaaaaat-caaaaacgtccttgacccttctccttcccactaaaactctatccattctcacccctccaaaatcatcatc 44558219  T
Q  547 atctccggcgattctcacgtttttgaagtttctgtgttcggctgtggtt---aaaggtaacacctttcctttagtttatcaaatttatgtgttcatattc 643  Q
    |||| ||  |||||| ||||||||||||||||||||||||| |||  ||   |||||||||  |||| || | ||||||||| ||||||||||| | |||    
T  44558218 atcttcgatgattctgacgtttttgaagtttctgtgttcggttgt--ttcaaaaaggtaacgtcttttctgttgtttatcaagtttatgtgttcgttttc 44558121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 152 - 648
Target Start/End: Original strand, 2827405 - 2827897
Alignment:
Q  152 tcgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacg 251  Q
    ||||||||||||||||||| |||| | |||||| ||  ||| |||||   | ||||||||||||| || | |||||| |||| | |||||||||||||||    
T  2827405 tcgagtgaaccatcaaattcgtccctaaattttcacacgtcggccaa---cgtccctcaattatgtgaaatatcaacttagtccttgaatttgtcagacg 2827501  T
Q  252 tccattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccac 350  Q
    ||||| ||||||||||||||||| |||| ||| ||||||| || |||||||||| |  ||||| |||| |||||||||| | |||||| ||| |||||||    
T  2827502 tccatcaaaaaggtccctccgtccaagtcctccgttagccttgctgatctgtcgtcttgcatgatgtgttgtcttgtacgcgtggcaagaaggaagccac 2827601  T
Q  351 gtgttcacggactaatttgatggaagttgaaaaat-tccagttttcacttttcaannnnnnnatgt----tattccaattttgcccctatattacccata 445  Q
    ||||||| ||||||||||||| ||| ||||||||| |  |||||||||||||||         | |    | |||| |||||||||||  ||||||||||    
T  2827602 gtgttcagggactaatttgattgaa-ttgaaaaatgttgagttttcacttttcagtttatttttttctccttttcccattttgcccctgcattacccata 2827700  T
Q  446 cctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcat 545  Q
    ||||||||  |||||||||    |||| ||       ||||| |||||||||| |||| ||||||||||| ||||||| ||||| |||||||||||||||    
T  2827701 cctccttctccacatttca----gaaa-atcaaaaa-cgtccttgacccttcttcttctcgctaaaacttcctccattttcacccctccaaaatcatcat 2827794  T
Q  546 catctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcac 645  Q
    |||||||||||||||| || |||||||||||| ||||||||| |||| |||||||||||||||||||| | ||||||||| ||| ||||||| |||||||    
T  2827795 catctccggcgattctgacatttttgaagtttgtgtgttcggttgtgattaaaggtaacacctttcctgttgtttatcaagtttttgtgttcgtattcac 2827894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 174 - 648
Target Start/End: Original strand, 27624826 - 27625290
Alignment:
Q  174 ccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtccattaaaaaggtccctccgt 273  Q
    ||||||||||||||||||  | |||| |||||  |||||||||||| | |||||| |||| |||||||||||||||||||||| |||||||||  |||||    
T  27624826 ccttgaatttttacgggttggtcaaattcatctttcaattatgcgaaatatcaacttagtccctgaatttgtcagacgtccatcaaaaaggtcattccgt 27624925  T
Q  274 caa-gtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatg 372  Q
    ||| ||||||||||||||||||||||||||||||  ||||||| || ||||||||||   |||||| ||| |||||||||||||| |||||||||||||     
T  27624926 caaagtgctctgttagccatgttgatctgtcgccatgcatgctttgttgtcttgtacgtgtggcaagaaggaagccacgtgttcaaggactaatttgatt 27625025  T
Q  373 gaagttgaaaaattccagttttcacttttcaannnnnnnatgttattccaattttgcccctatattacccatacctccttcctcacatttcactcagaaa 472  Q
    ||| |||   ||||| |||||  | ||||           || | |||| |||||||||||  |||||||||||||||||| ||| |||||| |||||||    
T  27625026 gaatttg---aattc-agttt--attttt----tttcttttgct-ttcccattttgcccctgcattacccatacctccttcttcagatttcagtcagaaa 27625114  T
Q  473 catnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggcgattctcacgtttttga 572  Q
     ||       ||||  ||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||  |||||| ||||||||||    
T  27625115 aataaaaaa-cgtcattgacccttctccttcccactaaaactttatccattctcacccctccaaaatcatcatcatctccgatgattctgacgtttttga 27625213  T
Q  573 agtttctgtgttcggctgtggtt---aaaggtaacacctttcctttagtttatcaaatttatgtgttcatattcaccct 648  Q
    ||||||||||||||| |||  ||   |||||||||  ||||||| | |||| |||| ||||||||||| ||||||||||    
T  27625214 agtttctgtgttcggttgt--ttcaaaaaggtaacgtctttcctgttgtttgtcaagtttatgtgttcgtattcaccct 27625290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 154 - 625
Target Start/End: Complemental strand, 2350631 - 2350159
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    |||||||||||||| ||||||| |||||||| | ||||| |||||| |  |||||||||||||||| | |||||  || |  |||||||| ||||||||     
T  2350631 gagtgaaccatcaatttagtccctgaattttcatgggtcggccaaatttgtccctcaattatgcgaaatatcaatttaatctctgaatttatcagacgtt 2350532  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgt---cttgtacacatggcaaaaagaaagcca 349  Q
    ||| ||||||||||||| ||| |||||||| |||||||||| |||  |||||| | |||||||||| |||   ||||||||| |||||| ||| ||||||    
T  2350531 catcaaaaaggtccctctgtccaagtgctccgttagccatgctgacatgtcgctctgcatgctgtgttgtactcttgtacacgtggcaagaaggaagcca 2350432  T
Q  350 cgtgttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnnatgttattccaattttgcccctatattacccatacctc 449  Q
    |||||||| ||||||||||||| ||| | |||||| | || |||||| |||  |         || | |||| |||||||||||  |||||  || ||||    
T  2350431 cgtgttcaaggactaatttgattgaattggaaaaagttcacttttcaattt--atttttttcctgcttttcccattttgcccctgcattacatattcctc 2350334  T
Q  450 cttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatc 549  Q
    |||| |||||||||| | ||||||||       | ||| |||| |||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  2350333 cttcttcacatttcagttagaaacatcaaaaa-catccttgactcttctccttcccactaaaactttctccattctcacccctccaaaatcataatcatc 2350235  T
Q  550 tccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaa 625  Q
    |||||||||||| |||||||||||||| ||||||||  ||||| | ||||||||| | |||||||| |||||||||    
T  2350234 tccggcgattctgacgtttttgaagttcctgtgttcaactgtgatcaaaggtaacgcatttccttttgtttatcaa 2350159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 154 - 561
Target Start/End: Complemental strand, 51042054 - 51041645
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||| ||||||| |||||| ||||||||| |||| | |||| |||||||||||||||| || | |||||| |||| | |||||||||||||||||    
T  51042054 gagtgaaccgtcaaattcgtccttaaatttttacaggtcggtcaaattcatccctcaattatgtgaaatatcaacttagtccatgaatttgtcagacgtc 51041955  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
     || |||||||||||||| || ||||||| ||||||||||| ||||||||||||| ||||| |||| |||||| ||||| |||||| ||| ||||||| |    
T  51041954 -atcaaaaaggtccctccatccaagtgctttgttagccatgctgatctgtcgccctgcatgttgtgttgtcttatacacgtggcaagaaggaagccacat 51041856  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttca---annnnnnnatgttattccaattttgcccctatattacccatacctc 449  Q
    ||||| ||||||||||||| ||| | |||||| || || ||||||||||||            || | |||| |||||||||||  |||||||||||| |    
T  51041855 gttcaaggactaatttgattgaattggaaaaagtctagctttcacttttcagtttattttttctgcttttcccattttgcccctgcattacccatacc-c 51041757  T
Q  450 cttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctcctt-cccgctaaaactttctccattctcacctctccaaaatcatcatcat 548  Q
     ||| |||||||||||||||||||||       ||||  |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||    
T  51041756 tttcttcacatttcactcagaaacat-caaaaacgtcattgacccttctccttccccgctaaagctttctccattctcacccctccaaaatcatcatcat 51041658  T
Q  549 ctccggcgattct 561  Q
    ||||| |||||||    
T  51041657 ctccgacgattct 51041645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 154 - 625
Target Start/End: Original strand, 35996063 - 35996539
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    |||||||||||||| ||||||  || ||||||| ||||| | |||| || |||||||||| ||| | | |||||  || | ||||||||| |||||||||    
T  35996063 gagtgaaccatcaatttagtctctggatttttatgggtcggtcaaattcgtccctcaattgtgcaaaatatcaatttaatccctgaatttatcagacgtc 35996162  T
Q  254 cattaaaaaggtccctccgtc-aagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| ||||||||||||||||| |||||||| |||||||||| |||  |||||||  ||||| |||| |||||||||||| |||||| ||| |||||||||    
T  35996163 catcaaaaaggtccctccgtccaagtgctccgttagccatgctgacatgtcgccatgcatgttgtgttgtcttgtacacgtggcaagaaggaagccacgt 35996262  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaa-----nnnnnnnatgttattccaattttgcccctatattacccatacc 447  Q
    ||||| ||||||||||||| ||| | ||||||   || ||||||||||||||             || | || | |||||||||||  |||||  || ||    
T  35996263 gttcaaggactaatttgattgaattggaaaaagatcacttttcacttttcaatttattgttttcctgctttttccattttgcccctgcattacatattcc 35996362  T
Q  448 tccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatca 547  Q
    |||||| |||||||||| ||||||||||       | |   |||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  35996363 tccttcttcacatttcagtcagaaacat-caaaaacatatttgactcttctccttcccgctaaaactttctccagtctcacccctccaaaatcatcatca 35996461  T
Q  548 tctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaa 625  Q
    |||||| ||||||| |||||||||||||| | |||||||  |||| | ||||||||  |||||||||| |||||||||    
T  35996462 tctccgccgattctgacgtttttgaagttcccgtgttcgattgtgatcaaaggtaatgcctttccttttgtttatcaa 35996539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 154 - 639
Target Start/End: Original strand, 10762581 - 10763071
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| |||| |||||||| ||| ||| |||||| |  |||||||||||||||| |  ||||  |  | |||||||||||||||||||    
T  10762581 gagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaaattagtccctcaattatgcgaaatttcaatttcatccctgaatttgtcagacgtc 10762680  T
Q  254 cattaaaaaggtccctccgtcaa-gtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||||||||| || | |||| |||||||||| |||  |||||||  |||||||||| |||| ||||| | |||||| ||| |||||||||    
T  10762681 catcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctggcatgctgtgctgtcctgtacgcgtggcaagaaggaagccacgt 10762780  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnnatgt-----tattccaattttgcccctatattacccatacc 447  Q
    ||||| |||| |||||||| ||  | |||||| | || |||||| |||||||        | |     | |||| |||||||||||  |||||  || ||    
T  10762781 gttcagggacgaatttgattgatttggaaaaagttcacttttcatttttcaatttaattttttcgtgcttttcccattttgcccctgcattacatattcc 10762880  T
Q  448 tccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatca 547  Q
    | |||| |||||||| ||||||||||||       | ||| |||| |||||||||||||||||||| ||||||||| ||||| |||||||||||||||||    
T  10762881 ttcttcttcacattttactcagaaacatcaaaaa-catccttgactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcatca 10762979  T
Q  548 tctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaaatttatgtgttcat 639  Q
    |||||  |||||||  ||| ||||||||| ||||||||| | ||| | ||||||||||||||||||| ||||||||||  || |||||||||    
T  10762980 tctccatcgattctggcgtgtttgaagttcctgtgttcgaccgtgatcaaaggtaacacctttccttgagtttatcaagattctgtgttcat 10763071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 154 - 552
Target Start/End: Complemental strand, 44794884 - 44794481
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    |||||||||||||| ||||||| |||||||| ||  ||| | |||| || |||||||||||||||| | |||||  || | ||||||||| |||||||||    
T  44794884 gagtgaaccatcaatttagtccctgaattttcacacgtcggtcaaattcgtccctcaattatgcgaaatatcaatttaatccctgaatttatcagacgtc 44794785  T
Q  254 cattaaaaaggtccctccgtcaa-gtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||||||||| || | |||| |||||||||| |||  |||||||  ||||||||||||||||||||| | |||||| ||| |||||||||    
T  44794784 catcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgccttgcatgctgtgatgtcttgtacgcgtggcaagaaggaagccacgt 44794685  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttc-----aannnnnnnatgttattccaattttgcccctatattacccatacc 447  Q
    ||||| |||| |||||||| ||  | |||||| | || |||||| |||||     ||        || | |||| |||||||||||  |||||  || ||    
T  44794684 gttcagggacgaatttgattgatttggaaaaagttcacttttcatttttcaatttaattttttcgtgcttttcccattttgcccctgcattacatattcc 44794585  T
Q  448 tccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatca 547  Q
    |||||| |||||||| ||||||||||||       | ||  |||| |||||||||||||||||||| ||||||||| ||||| ||||||||||||||| |    
T  44794584 tccttcttcacattttactcagaaacat-taaaaacatctttgactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcataa 44794486  T
Q  548 tctcc 552  Q
    |||||    
T  44794485 tctcc 44794481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 152 - 404
Target Start/End: Original strand, 47941809 - 47942062
Alignment:
Q  152 tcgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacg 251  Q
    |||||||||||||||| ||||||| |||||||||||||||| | |||| || || ||||||||||||| | |||||  || | ||||||||| |||||||    
T  47941809 tcgagtgaaccatcaatttagtccctgaatttttacgggtcggtcaaattcgtctctcaattatgcgaaatatcaatttaatccctgaatttatcagacg 47941908  T
Q  252 tccattaaaaaggtccctccgtcaa-gtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccac 350  Q
    ||||| |||||||||||||||| || | |||| |||||||||| |||  |||||||  ||||| |||| |||||||||| | |||||| ||| |||||||    
T  47941909 tccatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgccttgcatgttgtgctgtcttgtacgcgtggcaagaaggaagccac 47942008  T
Q  351 gtgttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaa 404  Q
    ||||||| |||| |||||||| ||  | |||||| | || |||||| |||||||    
T  47942009 gtgttcaaggacgaatttgattgatttggaaaaagttcacttttcatttttcaa 47942062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 154 - 371
Target Start/End: Complemental strand, 10372830 - 10372612
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||||||| |||| |||||||| ||| ||| |||||| |  |||||||||||||||| | |||||  |  | |||||||||||||||||||    
T  10372830 gagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaaattagtccctcaattatgcgaaatatcaatttcatccctgaatttgtcagacgtc 10372731  T
Q  254 cattaaaaaggtccctccgtcaagtg-ctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||||||||| ||  | ||| |||||||||| |||  |||||||  |||||||||| |||||||||| | |||||| ||  |||||||||    
T  10372730 catcaaaaaggtccctccgttaacggactccgttagccatgctgacatgtcgccttgcatgctgtgctgtcttgtacgcgtggcaagaaagaagccacgt 10372631  T
Q  353 gttcacggactaatttgat 371  Q
    ||||| |||| ||||||||    
T  10372630 gttcagggacgaatttgat 10372612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 418 - 610
Target Start/End: Complemental strand, 10372530 - 10372339
Alignment:
Q  418 ttccaattttgcccctatattacccatacctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttc 517  Q
    |||| |||||||||||  |||||  || |||||||| |||||||| ||| ||||||||       | ||| |||| |||||||||||||||||||| |||    
T  10372530 ttcccattttgcccctgcattacatattcctccttcttcacattttacttagaaacatcaaaaa-catccttgactcttctccttcccgctaaaacattc 10372432  T
Q  518 tccattctcacctctccaaaatcatcatcatctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacaccttt 610  Q
    |||||| ||||| ||||||||||||||||||||||  |||||||  | ||||||||||| ||||||||| ||||| | |||||||||||||||    
T  10372431 tccattgtcacccctccaaaatcatcatcatctccatcgattctggcatttttgaagttcctgtgttcgactgtgatcaaaggtaacaccttt 10372339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 4520542 - 4520451
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    ||||||| |||||| || ||||||||||||||| | ||| |||||| |||||| |||||||||||| | |||||| |||||| |||||||||    
T  4520542 gagtgaatcatcaacttcgtccttgaatttttatgagtcggccaaattcatccatcaattatgcgaaatatcaacttagttcttgaatttgt 4520451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 483 - 558
Target Start/End: Original strand, 25993835 - 25993910
Alignment:
Q  483 cgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggcgat 558  Q
    ||||||| ||| ||||||||||||| ||||| ||| ||||  |||||||||||||||||||||||||| |||||||    
T  25993835 cgtccctaacctttctccttcccgccaaaaccttcaccatcttcacctctccaaaatcatcatcatcttcggcgat 25993910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 28988121 - 28988061
Alignment:
Q  73 cattccagcttgtttgggtgaatgaaaagcactttcaaaaaactcagttttaagaccaaaa 133  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||||| |||| |||| ||||    
T  28988121 catttcagtttgtttgggtgaatgaaaagcacttccaaaaaactcaattttgagacaaaaa 28988061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 5484678 - 5484741
Alignment:
Q  312 tgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaa 375  Q
    ||||||| || ||||||||| ||| |||||||||||||||||| || ||||||| |||||||||    
T  5484678 tgctgtgttggcttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgatggaa 5484741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 375
Target Start/End: Original strand, 27382284 - 27382339
Alignment:
Q  320 tgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaa 375  Q
    |||||||||||| || ||| ||||||||||||||| || |||||||||||||||||    
T  27382284 tgtcttgtacacgtgtcaacaagaaagccacgtgtacaaggactaatttgatggaa 27382339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 39923098 - 39923007
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    |||||||||||||| || |||| ||||||||||| |||| |||||  || |||||||||||||||| | |||||  || | |||||||||||    
T  39923098 gagtgaaccatcaatttcgtccctgaatttttacaggtcggccaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgt 39923007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 42880747 - 42880684
Alignment:
Q  312 tgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaa 375  Q
    ||||||| || ||||||||| ||| |||||||||||||||||| || ||||||| |||||||||    
T  42880747 tgctgtgttgacttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgatggaa 42880684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 43779853 - 43779790
Alignment:
Q  312 tgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaa 375  Q
    ||||||| || ||||||||| ||| |||||||||||||||||| || ||||||| |||||||||    
T  43779853 tgctgtgttggcttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgatggaa 43779790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 403
Target Start/End: Complemental strand, 11255907 - 11255813
Alignment:
Q  310 catgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaagttg-aaaaattccagttttcacttttca 403  Q
    ||||||||| |||||||||||| || ||| |||  |||||||||| || ||||||| ||||||||| ||| |||||||| || ||| ||||||||    
T  11255907 catgctgtgttgtcttgtacacgtgtcaacaaggcagccacgtgtacaaggactaaattgatggaaattgtaaaaattcgagatttaacttttca 11255813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 557
Target Start/End: Original strand, 27382453 - 27382527
Alignment:
Q  483 cgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggcga 557  Q
    ||||||||||| ||||||||||||||||||| |||  ||   ||||| ||  |||||||||||||||||||||||    
T  27382453 cgtccctgacctttctccttcccgctaaaaccttcatcaacttcacccctttaaaatcatcatcatctccggcga 27382527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 309 - 403
Target Start/End: Complemental strand, 2693221 - 2693125
Alignment:
Q  309 gcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaa--gttgaaaaattccagttttcacttttca 403  Q
    |||||||||| |||| ||||||| || ||| |||  |||||||||| || |||||||||||||||||  | | ||||||| ||||||| ||||||||    
T  2693221 gcatgctgtgttgtcctgtacacgtgtcaagaaggcagccacgtgtacaaggactaatttgatggaaatggtaaaaaattgcagttttaacttttca 2693125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 42879275 - 42879340
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcga 219  Q
    ||||||| |||||| || |||| |||||||||||||||| |||||  || ||||||||||||||||    
T  42879275 gagtgaatcatcaacttcgtccctgaatttttacgggtcggccaacttcgtccctcaattatgcga 42879340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 43778389 - 43778454
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcga 219  Q
    ||||||| |||||| || ||||||||||||||||||||| | |||  || ||||||||||||||||    
T  43778389 gagtgaatcatcaacttcgtccttgaatttttacgggtcggtcaacttcgtccctcaattatgcga 43778454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 44992808 - 44992873
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcga 219  Q
    ||||||| |||||| || |||| |||||||||||||||| |||||  || ||||||||||||||||    
T  44992808 gagtgaatcatcaacttcgtccctgaatttttacgggtcggccaacttcgtccctcaattatgcga 44992873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 39083788 - 39083840
Alignment:
Q  323 cttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaa 375  Q
    ||||||||| ||| |||||||||||||||||| || ||||||| |||||||||    
T  39083788 cttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgatggaa 39083840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 39189531 - 39189583
Alignment:
Q  323 cttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaa 375  Q
    ||||||||| ||| |||||||||||||||||| || ||||||| |||||||||    
T  39189531 cttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgatggaa 39189583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 5486143 - 5486084
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaatt 213  Q
    |||||||||||||| || |||| |||||||||| ||||| |||||| |||||||| ||||    
T  5486143 gagtgaaccatcaatttcgtccctgaatttttaggggtcggccaaattcatccctaaatt 5486084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 483 - 558
Target Start/End: Complemental strand, 13450803 - 13450728
Alignment:
Q  483 cgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggcgat 558  Q
    ||||||| ||| || |||||||| ||||||| ||| | ||  ||||||||||||||||||| ||||||||| ||||    
T  13450803 cgtccctaacctttatccttccctctaaaaccttcactatcttcacctctccaaaatcatcctcatctccgacgat 13450728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 39921632 - 39921695
Alignment:
Q  312 tgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaa 375  Q
    ||||||| || ||||||||  ||| |||||||||||||||||| || ||||||| |||||||||    
T  39921632 tgctgtgttggcttgtacatgtgggaaaaagaaagccacgtgtacagggactaaattgatggaa 39921695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 44792942 - 44793025
Alignment:
Q  162 catcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    |||||| ||||||| |||||| | ||||||| |||||| || |||||||||||||||| | |||||  || | |||||||||||    
T  44792942 catcaacttagtccctgaattatcacgggtcggccaaattcgtccctcaattatgcgaaatatcaatttaatccctgaatttgt 44793025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 10371057 - 10371122
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcga 219  Q
    |||||||||||||| ||||||| |||||||| ||| ||| || ||| |  ||||||||||||||||    
T  10371057 gagtgaaccatcaacttagtccctgaattttcacgcgtcggctaaattagtccctcaattatgcga 10371122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 10768041 - 10767976
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcga 219  Q
    |||||||||||||| ||||| | |||||||| ||| ||| |||||| |  ||||||||||||||||    
T  10768041 gagtgaaccatcaagttagttcctgaattttcacgcgtcggccaaattagtccctcaattatgcga 10767976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 404
Target Start/End: Original strand, 25993653 - 25993748
Alignment:
Q  310 catgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaa--gttgaaaaattccagttttcacttttcaa 404  Q
    |||| |||| |||||||||||| || ||| ||  ||||||||||| || |||| ||||||||||||  | || |||||| |||||||||||||||||    
T  25993653 catgatgtgttgtcttgtacacgtgtcaacaatgaagccacgtgtacatggaccaatttgatggaaatgatg-aaaattgcagttttcacttttcaa 25993748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 39085243 - 39085178
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcga 219  Q
    ||||||| |||||| || |||| |||||||||||||||| | |||  || ||||||||||||||||    
T  39085243 gagtgaatcatcaacttcgtccctgaatttttacgggtcggtcaacttcgtccctcaattatgcga 39085178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 54152278 - 54152319
Alignment:
Q  82 ttgtttgggtgaatgaaaagcactttcaaaaaactcagtttt 123  Q
    |||||||||||||||||||| |||||||  ||||||||||||    
T  54152278 ttgtttgggtgaatgaaaagtactttcaggaaactcagtttt 54152319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 3e-62; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 151 - 625
Target Start/End: Original strand, 29077325 - 29077804
Alignment:
Q  151 atcgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagac 250  Q
    |||||||||||||||||||| |||| |||||||| ||| ||| |||||| |  |||||||||||||||| |  ||||  |  | ||||||||||||||||    
T  29077325 atcgagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaaattagtccctcaattatgcgaaatttcaatttcatccctgaatttgtcagac 29077424  T
Q  251 gtccattaaaaaggtccctccgtcaa-gtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagcca 349  Q
    |||||| |||||||||||||||| || | |||| |||||||||| |||  |||||||  |||||||||| |||||||||| | |||||| ||| ||||||    
T  29077425 gtccatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgccttgcatgctgtgttgtcttgtacgcgtggcaagaaggaagcca 29077524  T
Q  350 cgtgttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnnatgt-----tattccaattttgcccctatattacccat 444  Q
    |||||||| |||| |||||||| ||  | |||||| | || |||||| |||||||        | |     | |||| |||||||||||  |||||  ||    
T  29077525 cgtgttcagggacgaatttgattgatttggaaaaagttcacttttcatttttcaatttaattttttcgtgcttttcccattttgcccctgcattacatat 29077624  T
Q  445 acctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatca 544  Q
      || |||| |||||||| ||||||||||||       | ||| |||| |||||||||||||||||||| ||||||||| ||||| ||||||||||||||    
T  29077625 ttcttcttcttcacattttactcagaaacatcaaaaa-catccttgactcttctccttcccgctaaaacgttctccattttcacccctccaaaatcatca 29077723  T
Q  545 tcatctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaa 625  Q
    ||||||||  |||||||  ||| ||||||||| ||||||||| | ||| | |||||||||||||||||||  |||||||||    
T  29077724 tcatctccatcgattctggcgtgtttgaagttcctgtgttcgaccgtgatcaaaggtaacacctttccttgtgtttatcaa 29077804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 151 - 625
Target Start/End: Original strand, 29112297 - 29112776
Alignment:
Q  151 atcgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagac 250  Q
    ||||||||||||||||| ||||||| |||||||| ||| ||| |||||| |  |||||||||||||||| |  ||||  |  | ||||||||||||||||    
T  29112297 atcgagtgaaccatcaagttagtccctgaattttcacgcgtcggccaaattagtccctcaattatgcgaaatttcaatttcatccctgaatttgtcagac 29112396  T
Q  251 gtccattaaaaaggtccctccgtcaa-gtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagcca 349  Q
    |||||| |||||||||||||||| || | |||| |||||||||| |||  |||||||  |||||||||| |||| ||||| | |||||| ||| ||||||    
T  29112397 gtccatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcgcctggcatgctgtgctgtcctgtacgcgtggcaagaaggaagcca 29112496  T
Q  350 cgtgttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnnatgt-----tattccaattttgcccctatattacccat 444  Q
    |||||||| |||| |||||||| ||  | |||||| | || |||||| |||||||        | |     | |||| |||||||||||  |||||  ||    
T  29112497 cgtgttcagggacgaatttgattgatttggaaaaagttcacttttcatttttcaatttaattttttcgtgcttttcccattttgcccctgcattacatat 29112596  T
Q  445 acctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatca 544  Q
     ||| |||| |||||||| ||| ||||||||       | ||| |||| |||||||||||||||||||| ||||||||| ||||| ||||||||||||||    
T  29112597 tccttcttcttcacattttacttagaaacatcaaaaa-catccttgactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatca 29112695  T
Q  545 tcatctccggcgattctcacgtttttgaagtttctgtgttcggctgtggttaaaggtaacacctttcctttagtttatcaa 625  Q
    ||||||||  |||||||  ||| ||||||||| ||||||||| | ||| | |||||||||||||||||||  |||||||||    
T  29112696 tcatctccatcgattctggcgtgtttgaagttcctgtgttcgaccgtgatcaaaggtaacacctttccttgtgtttatcaa 29112776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 154 - 552
Target Start/End: Original strand, 2968139 - 2968528
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    |||||||||||||| ||||||| | |||||| |||||||| ||||| || |||||||||||||||| | |||||  || | ||||||||| |||||||||    
T  2968139 gagtgaaccatcaatttagtccctcaattttcacgggtctcccaaattcgtccctcaattatgcgaaatatcaatttaatccctgaatttatcagacgtc 2968238  T
Q  254 cattaaaaaggtccctccgtcaa-gtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgt 352  Q
    ||| |||||||||| ||||| || | |||| ||||||| || |||  |||||||  ||||| |||| |||||||||| | |||||| ||| |||||||||    
T  2968239 catcaaaaaggtccatccgttaacgggctccgttagccgtgctgacatgtcgccttgcatgttgtgctgtcttgtacgcgtggcaagaaggaagccacgt 2968338  T
Q  353 gttcacggactaatttgatggaagttgaaaaattccagttttcacttttcaannnnnnnatgttattccaattttgcccctatattacccatacctcctt 452  Q
    |||||  ||| |||||||| ||  | |||||  | || |||||| |||||         ||||| |||| |||||||||||  |||||  || | |||||    
T  2968339 gttcagagacgaatttgattgatttggaaaatgttcacttttcatttttc---------atgtttttcccattttgcccctgcattacatattcatcctt 2968429  T
Q  453 cctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctcc 552  Q
    | |||||||| ||||||||| ||       | ||  |||| |||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||    
T  2968430 cttcacattttactcagaaaaat-caaaaacatcattgactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcatcatctcc 2968528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 152 - 561
Target Start/End: Original strand, 4641353 - 4641767
Alignment:
Q  152 tcgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacg 251  Q
    |||||||||||||||| ||||||| |||||||| ||||||| |||||| || ||||||||||||| || | |||||  || | ||||||||| ||||||     
T  4641353 tcgagtgaaccatcaatttagtccctgaattttcacgggtcggccaaattcgtccctcaattatgtgaaatatcaatttaatccctgaatttatcagacc 4641452  T
Q  252 tccattaaaaaggtccctccgtcaa-gtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccac 350  Q
    ||||| |||||||||||||||| || | |||| |||||||||| |||  |||  ||  |||||||||| |||||||||| | |||||| ||| |||||||    
T  4641453 tccatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtttccttgcatgctgtgctgtcttgtacgcgtggcaagaaggaagccac 4641552  T
Q  351 gtgttcacggactaatttgatggaagttgaaaaattccagttttcacttttc-----aannnnnnnatgttattccaattttgcccctatattacccata 445  Q
    ||||||| |||| |||||||| ||  | |||||| | || |||||| |||||     ||        || | |||| ||||| |||||  |||||  ||     
T  4641553 gtgttcagggacgaatttgattgatttggaaaaagttcacttttcatttttcaatttaattttttcgtgcttttcccatttttcccctgcattacatatt 4641652  T
Q  446 cctccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcat 545  Q
    |||||||| |||||||| ||||||||||||       | ||  |||| |||||||||||||||||||| ||||||||| || || |||||||||||||||    
T  4641653 cctccttcttcacattttactcagaaacat-caaaaacatctttgactcttctccttcccgctaaaacgttctccattgtcgcccctccaaaatcatcat 4641751  T
Q  546 catctccggcgattct 561  Q
    |||||||  |||||||    
T  4641752 catctccatcgattct 4641767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 172 - 373
Target Start/End: Complemental strand, 3018538 - 3018336
Alignment:
Q  172 gtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtccattaaaaaggtccctcc 271  Q
    |||| |||||||| ||| ||| |||||  || |||||||||||||||| | |||||| |||| |||||||||||||||||||||| ||||||||||||||    
T  3018538 gtccctgaattttcacgcgtcggccaacttcgtccctcaattatgcgaaatatcaacttagtccctgaatttgtcagacgtccatcaaaaaggtccctcc 3018439  T
Q  272 gt-caagtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttga 370  Q
     | ||||||||| ||||||||||||||||| ||| |  ||||| |||| |||||||||| | |||||| | | ||||||| |||||| |||| |||||||    
T  3018438 atccaagtgctccgttagccatgttgatctatcgtcttgcatgatgtgttgtcttgtacgcgtggcaagacggaagccacatgttcagggacgaatttga 3018339  T
Q  371 tgg 373  Q
    |||    
T  3018338 tgg 3018336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 483 - 591
Target Start/End: Complemental strand, 30641123 - 30641018
Alignment:
Q  483 cgtccctgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatctccggcgattctcacgtttttgaagtttctgtg 582  Q
    ||||| ||||||||||||||||| |||||||||  ||| ||||| || |||||||||||||||||||| | | |||||| |||||||||||||||| |||    
T  30641123 cgtccttgacccttctccttcccactaaaactt--tccgttctcgcccctccaaaatcatcatcatct-ctgagattctgacgtttttgaagtttcagtg 30641027  T
Q  583 ttcggctgt 591  Q
    ||| |||||    
T  30641026 ttctgctgt 30641018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 413 - 555
Target Start/End: Complemental strand, 25171968 - 25171826
Alignment:
Q  413 tgttattccaattttgcccctatattacccatacct--ccttcctcacatttcactcagaaacatnnnnnnncgtccctgacccttctccttcccgctaa 510  Q
    |||| |||||| ||| ||||| ||||||||||||||  || ||||||||||||| |||||| |         ||||||||||| ||||||||||||||||    
T  25171968 tgtttttccaaatttacccctctattacccatacctttccatcctcacatttcagtcagaacc--tcaaaaacgtccctgacctttctccttcccgctaa 25171871  T
Q  511 aactttctccattctcacctctccaaaatcatcatcatctccggc 555  Q
    ||| |||  |||  |||||||||||||||||| ||||||||||||    
T  25171870 aaccttcatcatcttcacctctccaaaatcattatcatctccggc 25171826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 17950561 - 17950652
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgt 245  Q
    |||||||||||||| ||  ||| |||||||||||||||| |||||  || |||||||||||||||| | |||||  || | |||||||||||    
T  17950561 gagtgaaccatcaatttcatccctgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgt 17950652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 17952028 - 17951965
Alignment:
Q  312 tgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaa 375  Q
    ||||||| || ||||||||| ||| |||||||||||||||||| || ||||||| |||||||||    
T  17952028 tgctgtgttggcttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgatggaa 17951965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 35175849 - 35175786
Alignment:
Q  312 tgctgtgatgtcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaa 375  Q
    ||||||| || ||||||||| ||| |||||||||||||||||| || ||||||| |||||||||    
T  35175849 tgctgtgttggcttgtacacgtgggaaaaagaaagccacgtgtacagggactaaattgatggaa 35175786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 550
Target Start/End: Complemental strand, 4314660 - 4314599
Alignment:
Q  489 tgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcatcatcatct 550  Q
    |||| |||||||||||||||||||| ||| | ||  |||  |||||||||||||||||||||    
T  4314660 tgactcttctccttcccgctaaaaccttcacaatcttcatttctccaaaatcatcatcatct 4314599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 29114867 - 29114802
Alignment:
Q  154 gagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcga 219  Q
    |||||||||||||| ||||||| |||||||| ||| ||| |||||| |  ||| ||||||||||||    
T  29114867 gagtgaaccatcaagttagtccctgaattttcacgcgtcggccaaattagtccttcaattatgcga 29114802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 403
Target Start/End: Complemental strand, 30641284 - 30641203
Alignment:
Q  322 tcttgtacacatggcaaaaagaaagccacgtgttcacggactaatttgatggaagttgaaaaattccagttttcacttttca 403  Q
    ||||||||  || |||| ||||||||||| |||||  ||||||||||||| ||| |||||||| |  ||||||||| |||||    
T  30641284 tcttgtacgtatagcaagaagaaagccacatgttcgaggactaatttgattgaatttgaaaaagttaagttttcacatttca 30641203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 85; Significance: 4e-40; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 152 - 371
Target Start/End: Complemental strand, 6760 - 6540
Alignment:
Q  152 tcgagtgaaccatcaaattagtccttgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacg 251  Q
    |||||||||||||||| ||||||| |||||||| ||||||| |||||| || ||||||||||||| || | |||||  || | ||||||||| ||||||     
T  6760 tcgagtgaaccatcaatttagtccctgaattttcacgggtcggccaaattcgtccctcaattatgtgaaatatcaatttaatccctgaatttatcagacc 6661  T
Q  252 tccattaaaaaggtccctccgtcaa-gtgctctgttagccatgttgatctgtcgcccagcatgctgtgatgtcttgtacacatggcaaaaagaaagccac 350  Q
    ||||| |||||||||||||||| || | |||| |||||||||| |||  |||| ||  |||||||||| |||||||||| | |||||| ||| |||||||    
T  6660 tccatcaaaaaggtccctccgttaacgggctccgttagccatgctgacatgtcaccttgcatgctgtgctgtcttgtacgcgtggcaagaaggaagccac 6561  T
Q  351 gtgttcacggactaatttgat 371  Q
    ||||||| |||| ||||||||    
T  6560 gtgttcagggacgaatttgat 6540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1041 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 253
Target Start/End: Original strand, 2121 - 2197
Alignment:
Q  177 tgaatttttacgggtctgccaaaatcatccctcaattatgcgacacatcaacctagttcctgaatttgtcagacgtc 253  Q
    ||||||||||||  ||  ||||| ||||||||||||||||||| | |||||| || | ||| |||||||||||||||    
T  2121 tgaatttttacgcatcgaccaaattcatccctcaattatgcgaaatatcaacttaatccctaaatttgtcagacgtc 2197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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