View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9943_low_10 (Length: 244)
Name: NF9943_low_10
Description: NF9943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9943_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 7140635 - 7140419
Alignment:
| Q |
12 |
cataggctaaaattttaagagaaggaagttttggcctattagcaaaaacaacatcatgtgttttcattacttccttggctaaatttgaggaagaaacaac |
111 |
Q |
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| T |
7140635 |
cataggctaaaattttaagagaaggaagttttggcctattagcaaaaacaacatcatgtgttttcattacttccttggctaaatttgaggaagaaacaac |
7140536 |
T |
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| Q |
112 |
cactgcattaatttcacctagttttaggtgcattaaaggtccatatttttgagaaagtttttggagaccatgatgtggaagttttcctgcaaatgctagt |
211 |
Q |
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| T |
7140535 |
cactgcattaatttcacctagttgtaggtgcattaatggtccatatttttgagaaagtttttgaagcccatgatgtggaagttttcctgcaaatgctagt |
7140436 |
T |
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| Q |
212 |
tgatgtaagttaccaat |
228 |
Q |
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||||||||||||||||| |
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| T |
7140435 |
tgatgtaagttaccaat |
7140419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 7152442 - 7152282
Alignment:
| Q |
36 |
gaagttttggcctattagcaaaaacaacatcatgtgttttcattacttccttggctaaatttgaggaagaaacaaccactgcattaatttcacctagttt |
135 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||| |||||| || || || | || || |||| ||| | | ||||||||| |||| |
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| T |
7152442 |
gaagttttggcctattagcaaaagcagcatcatgtgttttcattatttcctttgccaatttaggagatgatacaatcacagtagaaatttcaccaagttg |
7152343 |
T |
|
| Q |
136 |
taggtgcattaaaggtccatatttttgagaaagtttttggagaccatgatgtggaagtttt |
196 |
Q |
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| T |
7152342 |
tatgtgcattaaaggtccatatttatgagaaagttcatgtagagcatgatgtggacgtttt |
7152282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 31185532 - 31185565
Alignment:
| Q |
128 |
cctagttttaggtgcattaaaggtccatattttt |
161 |
Q |
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| T |
31185532 |
cctagttttaggtgcattaagggtccatattttt |
31185565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 12426820 - 12426857
Alignment:
| Q |
185 |
tgtggaagttttcctgcaaatgctagttgatgtaagtt |
222 |
Q |
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| T |
12426820 |
tgtggaagttttcctgctaatgctagttgatgcaagtt |
12426857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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