View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9943_low_11 (Length: 239)
Name: NF9943_low_11
Description: NF9943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9943_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 30597858 - 30597647
Alignment:
| Q |
13 |
gtgttggtgacgatggttgtgctgagcctttttcggcattaaacagtttgaaaaatttgatgattctgtattgtaatgttcttgatgcagaaagcctctg |
112 |
Q |
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| T |
30597858 |
gtgttggtgacgatggttgtgctgagcctttttcggcattaaacagtttgaaaaatttgatgattctgtattgtaatgttcttgatgcagaaagcctctg |
30597759 |
T |
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| Q |
113 |
tatatcaagtgttacacttaccaatttgactatagtaggggatcctgtttactatagcacggttgagttatctactccaagtcttttcacctttgacttt |
212 |
Q |
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| T |
30597758 |
catatcaagtgttacacttaccaatttgactatagtaggggatcctgtttactatagcacggttgagttatctactccaagtcttttcacctttgacttt |
30597659 |
T |
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| Q |
213 |
gtttgttatgag |
224 |
Q |
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|||||||||||| |
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| T |
30597658 |
gtttgttatgag |
30597647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 6844582 - 6844699
Alignment:
| Q |
14 |
tgttggtgacgatggttgtgctgagcctttttcggcattaaacagtttgaaaaatttgatgattctgtattgtaatgttcttgatgcagaaagcctctgt |
113 |
Q |
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| T |
6844582 |
tgttggcgatgatggttgtgttgaccctttttcggcatttagcagtttgaatagtttgattattcggtactgtagagttcttggtcaacaaaacctctgt |
6844681 |
T |
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| Q |
114 |
atatcaagtgttacactt |
131 |
Q |
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| T |
6844682 |
atatcaagtgctacactt |
6844699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 6849020 - 6849145
Alignment:
| Q |
14 |
tgttggtgacgatggttgtgctgagcctttttcggcattaaacagtttgaaaaatttgatgattctgtattgtaatgttcttgatgcagaaagcctctgt |
113 |
Q |
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| T |
6849020 |
tgttggtgatgatggttgtgctgaacctttttccgcatttagctgtttgaacagtttgatcattcgttattgtagagttcttaatagacaaaacctctgc |
6849119 |
T |
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| Q |
114 |
atatcaagtgttacacttaccaattt |
139 |
Q |
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| T |
6849120 |
atatcaagtgctacacttgccaattt |
6849145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 6889597 - 6889702
Alignment:
| Q |
34 |
ctgagcctttttcggcattaaacagtttgaaaaatttgatgattctgtattgtaatgttcttgatgcagaaagcctctgtatatcaagtgttacacttac |
133 |
Q |
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| T |
6889597 |
ctgagcctttttcggcatttagtagtttgaatagtttgatcattcggggttgtaaagttcttgatgaacaaaacctctggatattaagtgctacacttgc |
6889696 |
T |
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| Q |
134 |
caattt |
139 |
Q |
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|||||| |
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| T |
6889697 |
caattt |
6889702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 6844740 - 6844783
Alignment:
| Q |
175 |
ttgagttatctactccaagtcttttcacctttgactttgtttgt |
218 |
Q |
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| T |
6844740 |
ttgagttatctactccaagtctttgcacctttgtctttgtttgt |
6844783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 6889743 - 6889784
Alignment:
| Q |
177 |
gagttatctactccaagtcttttcacctttgactttgtttgt |
218 |
Q |
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| T |
6889743 |
gagttatctactccaagtctttgcacctttgtctttgtttgt |
6889784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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