View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9943_low_12 (Length: 234)
Name: NF9943_low_12
Description: NF9943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9943_low_12 |
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| [»] scaffold0210 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 216
Target Start/End: Complemental strand, 6889859 - 6889664
Alignment:
| Q |
24 |
atcaatatttacatgtttgatggaagatagattgctctctctcccacgtagtctcagatcaggaatatcccctgtacaaccaaagacaaaggtgcaaaga |
123 |
Q |
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|||||| ||||||||||||| ||||| |||||||||||| ||||| ||||| ||||| |||||| | | || ||||| |||||||||||||||||||| |
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| T |
6889859 |
atcaatctttacatgtttgacagaagagagattgctctctatcccatgtagtttcagagcaggaaaacctccgatacaaacaaagacaaaggtgcaaaga |
6889760 |
T |
|
| Q |
124 |
cttggagtagataactcgattttgccatattggt--ggtgatacact-tttaaagttaaattggcaagtgtagcacttgatatgcagaggttttgt |
216 |
Q |
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||||||||||||||||||||||||||||| | || | | || | | |||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
6889759 |
cttggagtagataactcgattttgccataattgtaggcccaaccagtgtctaaagttaaattggcaagtgtagcacttaatatccagaggttttgt |
6889664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 216
Target Start/End: Complemental strand, 6844858 - 6844669
Alignment:
| Q |
24 |
atcaatatttacatgtttgatggaagatagattgctctctctcccacgtagtctcagatcaggaatatcccctgtacaaccaaagacaaaggtgcaaaga |
123 |
Q |
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| T |
6844858 |
atcaatctttacatgtttgacagaagagagatttctctctatcccatgtagtttcagagcaggaatattcccctcacaaacaaagacaaaggtgcaaaga |
6844759 |
T |
|
| Q |
124 |
cttggagtagataactcgattttgccatattggtggtgatacacttttaaagttaaattggcaagtgtagcacttgatatgcagaggttttgt |
216 |
Q |
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||||||||||||||||| |||||| |||||| | ||| | || || |||||||| ||||||||||||||||||| |||||||||||| |
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| T |
6844758 |
cttggagtagataactcaattttgtcatatttattgtgtt---tttctatagttaaatcatcaagtgtagcacttgatatacagaggttttgt |
6844669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 6849210 - 6849107
Alignment:
| Q |
111 |
aaaggtgcaaagacttggagtagataactcgattttgccatattggtggtgatacacttttaaagttaaattggcaagtgtagcacttgatatgcagagg |
210 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6849210 |
aaaggtgcaaagacttggagtagataactcgattatgccg-attagtagtgatacg-ttttaaagttaaattggcaagtgtagcacttgatatgcagagg |
6849113 |
T |
|
| Q |
211 |
ttttgt |
216 |
Q |
| |
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|||||| |
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| T |
6849112 |
ttttgt |
6849107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 6849478 - 6849371
Alignment:
| Q |
6 |
aatacaccccatacatagatcaatatttacatgtttgatggaagatagattgctctctctcccacgtagtctcagatcaggaatatcccctgtacaacca |
105 |
Q |
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|||| |||||||| || |||||||||||||||||||| |||||| |||||||||||||||||||||||| | |||| |||||||||||| ||||||||| |
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| T |
6849478 |
aatagaccccatatttaaatcaatatttacatgtttgacggaagagagattgctctctctcccacgtagttttagattaggaatatcccccgtacaacca |
6849379 |
T |
|
| Q |
106 |
aagacaaa |
113 |
Q |
| |
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|||||||| |
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| T |
6849378 |
aagacaaa |
6849371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 30597579 - 30597694
Alignment:
| Q |
25 |
tcaatatttacatgtttgatggaagatagattgctctctctcccacgtagtctcagatcaggaatatcccctgtacaaccaaagacaaaggtgcaaagac |
124 |
Q |
| |
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||||||||||||||||||| ||||| || ||| | | |||| || |||| ||| | |||||||| || | |||| ||||| |||||||| |||||| |
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| T |
30597579 |
tcaatatttacatgtttgacagaagagaggttgattttgctcctacatagtttcaaaacaggaataccctcataacaaacaaagtcaaaggtgaaaagac |
30597678 |
T |
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| Q |
125 |
ttggagtagataactc |
140 |
Q |
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|||||||||||||||| |
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| T |
30597679 |
ttggagtagataactc |
30597694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 15863 - 15902
Alignment:
| Q |
178 |
aaattggcaagtgtagcacttgatatgcagaggttttgtg |
217 |
Q |
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|||||||||||||| |||||||||||| |||||||||||| |
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| T |
15863 |
aaattggcaagtgtggcacttgatatgtagaggttttgtg |
15902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 8656155 - 8656196
Alignment:
| Q |
175 |
gttaaattggcaagtgtagcacttgatatgcagaggttttgt |
216 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||| |
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| T |
8656155 |
gttaaattggtgagtgtggcacttgatatgcagaggttttgt |
8656196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 7174891 - 7174931
Alignment:
| Q |
176 |
ttaaattggcaagtgtagcacttgatatgcagaggttttgt |
216 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||| |
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| T |
7174891 |
ttaaattggcaagtgtgacacttgatatgcagatgttttgt |
7174931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 7058317 - 7058357
Alignment:
| Q |
176 |
ttaaattggcaagtgtagcacttgatatgcagaggttttgt |
216 |
Q |
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|||||||||||||||| ||||| |||||| ||||||||||| |
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| T |
7058317 |
ttaaattggcaagtgtggcactcgatatgtagaggttttgt |
7058357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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