View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9943_low_6 (Length: 387)
Name: NF9943_low_6
Description: NF9943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9943_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 44 - 214
Target Start/End: Complemental strand, 4610966 - 4610796
Alignment:
| Q |
44 |
ggctcgcgatacacattagaaattcgtattgattcgatctagttctgcattgaaatgagatatgaatggcgtgtatcgtaaggtactgataacaattgct |
143 |
Q |
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| T |
4610966 |
ggctcgcgatacacactagaaattcgtattgatttgatccagttttgcattgaaatgagatacgagtcgcatgtatcgtaaggtactgataacaattgct |
4610867 |
T |
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| Q |
144 |
atgagtacagagttgtattctttaaaagaaaccaaaccaaattctttactagatgtaaaccacttggttac |
214 |
Q |
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| T |
4610866 |
atgagtacagagttgtattctttaaaagaaaccaaaccaaattctttactagatgtaaaccacttggttac |
4610796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 300 - 371
Target Start/End: Complemental strand, 4610710 - 4610639
Alignment:
| Q |
300 |
ttccaaagcactaactaacatcattacatctttagtttcctctcaaatttctccaatactgtgacaactaaa |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4610710 |
ttccaaagcactaactaacatcattacatctttagtttcctctcaaatttctccaatactgtgacaactaaa |
4610639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 4611036 - 4610997
Alignment:
| Q |
1 |
ttgacaaaggaaaccattagaatgaatcatgatttaccat |
40 |
Q |
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| T |
4611036 |
ttgacaaaggaaaccattaaaataaatcatgatttaccat |
4610997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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