View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9943_low_9 (Length: 296)
Name: NF9943_low_9
Description: NF9943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9943_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 64 - 279
Target Start/End: Complemental strand, 36277227 - 36277013
Alignment:
| Q |
64 |
tctcaaactatccacttcttagattttataccagaattgttatattnnnnnnngtataaaccaaaatacttcatttttcacacgcacaaatgtttctatt |
163 |
Q |
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| T |
36277227 |
tctcaaactatccacttcttagatttaataccagaattgttatattaaaaaaagtataaaccaaaatacttcatttttcacacgcacaaatgtttctatt |
36277128 |
T |
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| Q |
164 |
at---acacgtgtaaaatataatagagaatatacatacattgatcattctttgttaatatataattataaagatttaaataaaacaatagtaatgatcaa |
260 |
Q |
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| T |
36277127 |
attatacacgtgtaaaatataatagagaatatacat----tgatcattctttgttaatatataattataaagatttaaataaaacaatggtaatgatcaa |
36277032 |
T |
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| Q |
261 |
agcacaaagtgtagagttt |
279 |
Q |
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|||||||||||| |||||| |
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| T |
36277031 |
agcacaaagtgttgagttt |
36277013 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 37817989 - 37817950
Alignment:
| Q |
195 |
atacattgatcattctttgttaatatataattataaagat |
234 |
Q |
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| T |
37817989 |
atacattgatcattcttcattaatatataattataaagat |
37817950 |
T |
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