View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9944_1 (Length: 415)

Name: NF9944_1
Description: NF9944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9944_1
NF9944_1
[»] chr3 (8 HSPs)
chr3 (34-392)||(29821876-29822219)
chr3 (68-119)||(49333873-49333923)
chr3 (43-117)||(54653010-54653085)
chr3 (64-117)||(43102304-43102357)
chr3 (24-119)||(33149973-33150069)
chr3 (64-119)||(47807849-47807904)
chr3 (74-119)||(12992033-12992077)
chr3 (74-119)||(50259425-50259469)
[»] chr5 (3 HSPs)
chr5 (120-262)||(40880222-40880364)
chr5 (64-119)||(1663507-1663562)
chr5 (70-119)||(10084988-10085037)
[»] chr8 (4 HSPs)
chr8 (38-117)||(118777-118856)
chr8 (64-119)||(5777111-5777166)
chr8 (74-119)||(45436181-45436225)
chr8 (64-108)||(7487145-7487188)
[»] chr6 (2 HSPs)
chr6 (27-71)||(24546535-24546579)
chr6 (360-393)||(4030718-4030751)
[»] chr1 (2 HSPs)
chr1 (43-117)||(3978364-3978439)
chr1 (74-119)||(38961773-38961817)
[»] chr7 (3 HSPs)
chr7 (43-119)||(38407199-38407275)
chr7 (64-117)||(19279339-19279392)
chr7 (70-119)||(25154619-25154668)
[»] chr4 (1 HSPs)
chr4 (43-119)||(26791090-26791166)
[»] chr2 (1 HSPs)
chr2 (43-117)||(34039627-34039702)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 34 - 392
Target Start/End: Complemental strand, 29822219 - 29821876
Alignment:
Q  34 aacaagaacatttcttcattacaatatcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaacatgataaatgattgt 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  29822219 aacaagaacatttcttcattacaatatcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaatatgatagatgattgt 29822120  T
Q  134 tagagaagtagtgattattccaattcgagaagggatgggtctcctaaagaagaaaggaaggccggaagtttttctgaatattttcttcatgattcgataa 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  29822119 tagagaagtagtgattattccaattcgagaagggatgggtctcctaaaaaagaaaggaaggctggaagtttttctgaatattttcttcatgattccataa 29822020  T
Q  234 acgtacaatcattcaaatacatattacatgataactaacttcctagaaaatagcagttactaaactacataattctaaactgcataattatagaaactga 333  Q
    | ||||||||||||||||||||||||||||  ||||||||||||||||||| | ||||||||               |||||||||||||||||||||||    
T  29822019 aagtacaatcattcaaatacatattacatggaaactaacttcctagaaaatggtagttacta---------------aactgcataattatagaaactga 29821935  T
Q  334 ctattgcaattattttaaattataaataaactatttaacatatataattttgatgatgt 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29821934 ctattgcaattattttaaattataaataaactatttaacatatataattttgatgatgt 29821876  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 49333923 - 49333873
Alignment:
Q  68 atcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 119  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  49333923 atcaaccttttcaacaaccacaaacaccc-aatctcaatttcaacaacaaca 49333873  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 54653010 - 54653085
Alignment:
Q  43 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 117  Q
    ||||||||||||| || | || ||||| |||||||||||| ||||||||||| | ||| |||||||||||||||||    
T  54653010 atttcttcattaccatcaacaacaacaacaaccttttcaacaaccacaaacatctcaaactcaatttcaacaacaa 54653085  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 43102304 - 43102357
Alignment:
Q  64 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 117  Q
    ||||| |||||||||||| |||||||||||  |||||| |||||||||||||||    
T  43102304 caacaacaaccttttcaacaaccacaaacattccaatcccaatttcaacaacaa 43102357  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 33149973 - 33150069
Alignment:
Q  24 catcatcaacaacaagaaca-tttcttcattacaatatcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 119  Q
    ||||| ||||||||| |||| ||| || || |||||| || || || |||||||| ||| ||||| ||||||||||||  |||||||||||||||||    
T  33149973 catcaacaacaacaacaacaattttttaatcacaataacaacagcagcaacctttgcaagaaccataaacaccccaatggcaatttcaacaacaaca 33150069  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 47807904 - 47807849
Alignment:
Q  64 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 119  Q
    ||||| |||||||||| | ||||||||||| |  ||||||||||||||||||||||    
T  47807904 caacaacaaccttttcgacaaccacaaacatcttaatctcaatttcaacaacaaca 47807849  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 12992077 - 12992033
Alignment:
Q  74 cttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 119  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
T  12992077 cttttcaacaaccacaaataccc-aatctcaatttcaacaacaaca 12992033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 50259425 - 50259469
Alignment:
Q  74 cttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 119  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
T  50259425 cttttcaacaaccacaaataccc-aatctcaatttcaacaacaaca 50259469  T

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Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 120 - 262
Target Start/End: Original strand, 40880222 - 40880364
Alignment:
Q  120 tgataaatgattgttagagaagtagtgattattccaattcgagaagggatgggtctcctaaagaagaaaggaaggccggaagtttttctgaatattttct 219  Q
    ||||| |||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||    
T  40880222 tgatagatgattgttaaagaagtagtgattatcccaattcgagaagggatgagtctcctaaagaagaaaggaaggctgtaagtttttatgaatattttct 40880321  T
Q  220 tcatgattcgataaacgtacaatcattcaaatacatattacat 262  Q
    | ||||||| | ||||||||||||||||||||||| |||||||    
T  40880322 taatgattcaacaaacgtacaatcattcaaatacacattacat 40880364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 1663507 - 1663562
Alignment:
Q  64 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 119  Q
    ||||| |||| ||||||| ||||||||||| | |||||||||||||||||||||||    
T  1663507 caacaacaactttttcaacaaccacaaacatctcaatctcaatttcaacaacaaca 1663562  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 10084988 - 10085037
Alignment:
Q  70 caaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 119  Q
    |||||||||||| |||||| ||||  ||||||||||||||||||||||||    
T  10084988 caaccttttcaacaaccacgaacattccaatctcaatttcaacaacaaca 10085037  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 118856 - 118777
Alignment:
Q  38 agaacatttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 117  Q
    |||| |||||||||| ||||| | || ||||||||||||||||| || ||| ||||||||||||||||||||||| |||||    
T  118856 agaaaatttcttcatcacaattagcaacaacatcaaccttttcataa-ccataaacaccccaatctcaatttcaataacaa 118777  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 5777166 - 5777111
Alignment:
Q  64 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 119  Q
    ||||| |||||||||||| || | |||||| ||||||||||||| |||||||||||    
T  5777166 caacaacaaccttttcaacaatctcaaacaacccaatctcaattccaacaacaaca 5777111  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 45436225 - 45436181
Alignment:
Q  74 cttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 119  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
T  45436225 cttttcaacaaccacaaataccc-aatctcaatttcaacaacaaca 45436181  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 7487188 - 7487145
Alignment:
Q  64 caacatcaaccttttcaaaaaccacaaacaccccaatctcaattt 108  Q
    ||||||||||||||||| || ||| ||||||||||||||||||||    
T  7487188 caacatcaaccttttcataa-ccataaacaccccaatctcaattt 7487145  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 24546579 - 24546535
Alignment:
Q  27 catcaacaacaagaacatttcttcattacaatatcagcaacatca 71  Q
    |||||||||||||||||||||||||| |||||| |||||||||||    
T  24546579 catcaacaacaagaacatttcttcatcacaataccagcaacatca 24546535  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 393
Target Start/End: Complemental strand, 4030751 - 4030718
Alignment:
Q  360 taaactatttaacatatataattttgatgatgtc 393  Q
    ||||||||||||||| ||||||||||||||||||    
T  4030751 taaactatttaacatgtataattttgatgatgtc 4030718  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 3978364 - 3978439
Alignment:
Q  43 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 117  Q
    ||||||||||||| || | || ||||| |||||||||||| ||||||||||| | ||| |||||||||||||||||    
T  3978364 atttcttcattaccatcaacaacaacaacaaccttttcaacaaccacaaacatctcaaactcaatttcaacaacaa 3978439  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 38961817 - 38961773
Alignment:
Q  74 cttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 119  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
T  38961817 cttttcaacaaccacaaataccc-aatctcaatttcaacaacaaca 38961773  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 38407275 - 38407199
Alignment:
Q  43 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 119  Q
    |||||||||| ||||| | || ||||||||||||||||| || ||| || ||||| ||||||||||||||||||||||    
T  38407275 atttcttcatcacaattagcaacaacatcaaccttttcataa-ccataatcaccctaatctcaatttcaacaacaaca 38407199  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 19279392 - 19279339
Alignment:
Q  64 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 117  Q
    ||||| |||||||||||| ||||||||||| | ||| |||||||| ||||||||    
T  19279392 caacaacaaccttttcaacaaccacaaacatctcaaactcaattttaacaacaa 19279339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 25154668 - 25154619
Alignment:
Q  70 caaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 119  Q
    |||| ||||||| |||||||||||| |||||||||| | |||||||||||    
T  25154668 caactttttcaacaaccacaaacactccaatctcaaatccaacaacaaca 25154619  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 26791166 - 26791090
Alignment:
Q  43 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 119  Q
    ||||||||||||| || | || ||||| |||||||||||| ||||||||||| ||| ||||||||||||||| |||||    
T  26791166 atttcttcattaccatgaacaacaacaacaaccttttcaacaaccacaaacatccc-atctcaatttcaacagcaaca 26791090  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 34039627 - 34039702
Alignment:
Q  43 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 117  Q
    ||||||||||||| || | || ||||| |||||||||||| ||||||||| |  |||||| |||||||||||||||    
T  34039627 atttcttcattaccatcaacaacaacaacaaccttttcaacaaccacaaatattccaatcccaatttcaacaacaa 34039702  T

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