View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9944_low_1 (Length: 415)

Name: NF9944_low_1
Description: NF9944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9944_low_1
NF9944_low_1
[»] chr5 (4 HSPs)
chr5 (22-401)||(39674796-39675175)
chr5 (232-292)||(15210794-15210854)
chr5 (209-293)||(18175207-18175291)
chr5 (261-293)||(31802255-31802287)
[»] chr3 (1 HSPs)
chr3 (22-71)||(34626384-34626433)
[»] chr1 (4 HSPs)
chr1 (29-71)||(51044747-51044789)
chr1 (234-287)||(4865830-4865883)
chr1 (248-282)||(40800284-40800318)
chr1 (248-293)||(48607771-48607816)
[»] chr2 (2 HSPs)
chr2 (213-292)||(5164813-5164892)
chr2 (201-293)||(23405199-23405291)
[»] chr8 (2 HSPs)
chr8 (235-294)||(32648313-32648372)
chr8 (253-294)||(4230554-4230595)
[»] chr6 (3 HSPs)
chr6 (204-266)||(3037595-3037658)
chr6 (235-293)||(33697122-33697180)
chr6 (254-294)||(28957108-28957148)
[»] chr4 (3 HSPs)
chr4 (250-288)||(32866976-32867014)
chr4 (251-296)||(49233814-49233859)
chr4 (248-293)||(50376671-50376716)
[»] chr7 (4 HSPs)
chr7 (206-294)||(1798143-1798229)
chr7 (253-293)||(3948054-3948094)
chr7 (242-294)||(18677026-18677078)
chr7 (251-295)||(35644436-35644480)


Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 22 - 401
Target Start/End: Original strand, 39674796 - 39675175
Alignment:
Q  22 attgaggaagggtttatgtgtagctggatcaatcccttgtttcattagttacttggttgcagccgatccctccaactcagtaattgtatcatccgaatct 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39674796 attgaggaagggtttatgtgtagctggatcaatcccttgtttcattacttacttggttgcagccgatccctccaactaagtaattgtatcatccgaatct 39674895  T
Q  122 agtttagtaataaaattgaattaccatgcatgctattaaatttatttcagttacccnnnnnnncctttcaaataacttaacctttttaagatgaataagt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||    
T  39674896 agtttagtaataaaattgaattaccatgcatgctattaaatttatttcagttaccctttttttcctttcaaataacttaacatttttaagatgaataagt 39674995  T
Q  222 gagttatcttgagttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactcacaattttagtgtgtgagcttatttaaaaa 321  Q
    ||||||||| ||||||||||  |  | | |||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||||||||||||    
T  39674996 gagttatctggagttcgaacctcagttcttacatatataatgcaacgtctcaaccaattgagttaaactcacaattttagtgtgtgaacttatttaaaaa 39675095  T
Q  322 tggatacaatgtgttgtacaatttcgaatgaaaaactcacgctaatagactgtgtagttaaatatttcaataaatcaatg 401  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  39675096 tagatacaatgtgttgtacaatttcgaatgaaaaactcacgctaatagaccgtgtagttaaatattttaataaatcaatg 39675175  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 15210854 - 15210794
Alignment:
Q  232 gagttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactca 292  Q
    |||||| ||| ||||||||| |||| |  |||||||||  |||||||||||||||||||||    
T  15210854 gagttcaaaccccgatccctgcatagaatatgcaacgttcctatcaactgagttaaactca 15210794  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 293
Target Start/End: Complemental strand, 18175291 - 18175207
Alignment:
Q  209 aagatgaataagtgagttatcttgagttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactcac 293  Q
    |||||||||||||| | | ||| | |||||||| |||| |||||||||||  |||||||||| ||  |||| ||||||| |||||    
T  18175291 aagatgaataagtgggatgtctggggttcgaaccccgacccctacatataatatgcaacgtccctgacaaccgagttaagctcac 18175207  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 31802255 - 31802287
Alignment:
Q  261 atgcaacgtctctatcaactgagttaaactcac 293  Q
    ||||| |||||||||||||||||||||||||||    
T  31802255 atgcatcgtctctatcaactgagttaaactcac 31802287  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 34626384 - 34626433
Alignment:
Q  22 attgaggaagggtttatgtgtagctggatcaatcccttgtttcattagtt 71  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34626384 attgatgaagggtttatgtgtagctggatcaatcccttgtttcattagtt 34626433  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 51044789 - 51044747
Alignment:
Q  29 aagggtttatgtgtagctggatcaatcccttgtttcattagtt 71  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  51044789 aagggtttatgtgtagctggatcaatcccttgtttcattagtt 51044747  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 4865830 - 4865883
Alignment:
Q  234 gttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaa 287  Q
    ||||||||||||| |||||||||||| |||||| ||| ||| ||||||||||||    
T  4865830 gttcgaactccgacccctacatatattatgcaatgtccctaccaactgagttaa 4865883  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 282
Target Start/End: Original strand, 40800284 - 40800318
Alignment:
Q  248 ccctacatatataatgcaacgtctctatcaactga 282  Q
    ||||||||||||||||||| |||||||||||||||    
T  40800284 ccctacatatataatgcaatgtctctatcaactga 40800318  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 293
Target Start/End: Original strand, 48607771 - 48607816
Alignment:
Q  248 ccctacatatataatgcaacgtctctatcaactgagttaaactcac 293  Q
    ||||||||||| |||||||  || ||||||||||||||||||||||    
T  48607771 ccctacatataaaatgcaatatccctatcaactgagttaaactcac 48607816  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 5164892 - 5164813
Alignment:
Q  213 tgaataagtgagttatcttgagttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactca 292  Q
    |||||||||||| | |||   ||||||| ||||| |||||||||||||||||||  |||||||||||| |||||||||||    
T  5164892 tgaataagtgagatgtctaaggttcgaattccgacccctacatatataatgcaatatctctatcaactaagttaaactca 5164813  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 293
Target Start/End: Complemental strand, 23405291 - 23405199
Alignment:
Q  201 acctttttaagatgaataagtgagttatcttgagttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactcac 293  Q
    ||||||||||| |||||||||| | | ||  | |||||||| |||| |||| ||||||| |||||| ||| ||| |||||||| ||| |||||    
T  23405291 acctttttaaggtgaataagtggggtgtccagggttcgaaccccgacccctgcatatattatgcaatgtccctaccaactgagctaagctcac 23405199  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 32648313 - 32648372
Alignment:
Q  235 ttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactcaca 294  Q
    ||||||| |||||| |||||||||| || ||||||||| | ||| |||||||||||||||    
T  32648313 ttcgaaccccgatctctacatatattatacaacgtctcaaacaattgagttaaactcaca 32648372  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 4230595 - 4230554
Alignment:
Q  253 catatataatgcaacgtctctatcaactgagttaaactcaca 294  Q
    |||||||||||||| |||| ||||||| ||||||||||||||    
T  4230595 catatataatgcaatgtctttatcaacagagttaaactcaca 4230554  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 3037595 - 3037658
Alignment:
Q  204 tttttaagatgaataagtgagttatcttgagttcgaactccgatccctacatat-ataatgcaa 266  Q
    ||||||||||||||||||| ||| |||  ||||||||| ||| ||||||||||| |||||||||    
T  3037595 tttttaagatgaataagtgggttgtctgaagttcgaacaccgctccctacatatcataatgcaa 3037658  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 33697122 - 33697180
Alignment:
Q  235 ttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactcac 293  Q
    |||||||||||| |||| |||||| |||||||  || |||||||||||||||| |||||    
T  33697122 ttcgaactccgacccctgcatataaaatgcaatatccctatcaactgagttaagctcac 33697180  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 28957148 - 28957108
Alignment:
Q  254 atatataatgcaacgtctctatcaactgagttaaactcaca 294  Q
    |||||| |||||| |||| ||||||||||||||||||||||    
T  28957148 atatattatgcaatgtctttatcaactgagttaaactcaca 28957108  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 32867014 - 32866976
Alignment:
Q  250 ctacatatataatgcaacgtctctatcaactgagttaaa 288  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  32867014 ctacatatattatgcaacgtctctatcaattgagttaaa 32866976  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 49233814 - 49233859
Alignment:
Q  251 tacatatataatgcaacgtctctatcaactgagttaaactcacaat 296  Q
    ||||||||| |||||  ||||||||||||||||||||||| |||||    
T  49233814 tacatatattatgcattgtctctatcaactgagttaaacttacaat 49233859  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 293
Target Start/End: Original strand, 50376671 - 50376716
Alignment:
Q  248 ccctacatatataatgcaacgtctctatcaactgagttaaactcac 293  Q
    |||| ||||||| |||||| ||||||| ||||||||||||||||||    
T  50376671 ccctgcatatattatgcaatgtctctaccaactgagttaaactcac 50376716  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 294
Target Start/End: Complemental strand, 1798229 - 1798143
Alignment:
Q  206 tttaagatgaataagtgagttatcttgagttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactcaca 294  Q
    |||||||||||||||||||  |||  || |||||||||||| || |||||||||||| ||| |||||||| |  ||||||| |||||||    
T  1798229 tttaagatgaataagtgaggaatcagga-ttcgaactccga-ccttacatatataatacaatgtctctattagttgagttatactcaca 1798143  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 3948094 - 3948054
Alignment:
Q  253 catatataatgcaacgtctctatcaactgagttaaactcac 293  Q
    ||||||| |||||  ||||||||||||||||||||||||||    
T  3948094 catatattatgcattgtctctatcaactgagttaaactcac 3948054  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 18677078 - 18677026
Alignment:
Q  242 tccgatccctacatatataatgcaacgtctctatcaactgagttaaactcaca 294  Q
    |||||||||| ||||||  ||||||||||  || |||||||||||||||||||    
T  18677078 tccgatccctgcatataatatgcaacgtccataccaactgagttaaactcaca 18677026  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 35644480 - 35644436
Alignment:
Q  251 tacatatataatgcaacgtctctatcaactgagttaaactcacaa 295  Q
    ||||||||||||| || || |||| ||||||||||||||||||||    
T  35644480 tacatatataatgtaatgtttctaacaactgagttaaactcacaa 35644436  T

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