View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9945_high_4 (Length: 293)

Name: NF9945_high_4
Description: NF9945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9945_high_4
NF9945_high_4
[»] chr2 (14 HSPs)
chr2 (206-280)||(13686091-13686165)
chr2 (207-280)||(19899018-19899091)
chr2 (206-280)||(28716344-28716418)
chr2 (212-280)||(14941014-14941082)
chr2 (212-264)||(3810312-3810364)
chr2 (212-281)||(41464925-41464994)
chr2 (212-280)||(45093176-45093244)
chr2 (212-257)||(28429385-28429430)
chr2 (206-274)||(25415011-25415079)
chr2 (206-273)||(42263929-42263997)
chr2 (212-250)||(29689277-29689315)
chr2 (212-274)||(40126533-40126595)
chr2 (225-274)||(35323508-35323557)
chr2 (240-280)||(35676298-35676338)
[»] chr4 (10 HSPs)
chr4 (212-280)||(18375418-18375486)
chr4 (206-280)||(41878614-41878688)
chr4 (206-280)||(54358210-54358284)
chr4 (212-280)||(17847569-17847637)
chr4 (212-255)||(4512215-4512258)
chr4 (212-251)||(24683180-24683219)
chr4 (212-251)||(47281588-47281627)
chr4 (206-279)||(26179238-26179311)
chr4 (217-273)||(23348147-23348203)
chr4 (206-252)||(37674055-37674101)
[»] chr3 (13 HSPs)
chr3 (206-279)||(1561283-1561356)
chr3 (206-280)||(521791-521865)
chr3 (212-255)||(36517618-36517661)
chr3 (212-280)||(20912271-20912339)
chr3 (206-274)||(38176422-38176490)
chr3 (212-274)||(31788409-31788471)
chr3 (206-248)||(34624535-34624577)
chr3 (220-273)||(22650427-22650482)
chr3 (212-280)||(23643006-23643074)
chr3 (206-280)||(45166324-45166398)
chr3 (220-280)||(50612901-50612961)
chr3 (212-248)||(51297084-51297120)
chr3 (212-252)||(52546846-52546886)
[»] chr8 (10 HSPs)
chr8 (206-281)||(36473075-36473150)
chr8 (206-252)||(4851831-4851877)
chr8 (206-280)||(15561941-15562015)
chr8 (206-280)||(33888946-33889020)
chr8 (212-279)||(11643387-11643455)
chr8 (212-258)||(1005693-1005739)
chr8 (206-264)||(39112746-39112804)
chr8 (220-281)||(11653737-11653798)
chr8 (212-253)||(41322633-41322674)
chr8 (206-264)||(2001745-2001803)
[»] chr5 (15 HSPs)
chr5 (206-280)||(4391872-4391946)
chr5 (206-280)||(40925933-40926007)
chr5 (206-251)||(38614236-38614281)
chr5 (206-273)||(34286691-34286759)
chr5 (212-263)||(3456856-3456907)
chr5 (212-252)||(6614301-6614341)
chr5 (212-280)||(37093938-37094006)
chr5 (212-262)||(31644730-31644780)
chr5 (220-273)||(228135-228189)
chr5 (206-280)||(5481450-5481524)
chr5 (215-273)||(32891281-32891339)
chr5 (214-248)||(35672369-35672403)
chr5 (206-251)||(11739275-11739320)
chr5 (212-257)||(29223567-29223612)
chr5 (212-264)||(8692612-8692664)
[»] chr6 (4 HSPs)
chr6 (212-279)||(7646802-7646869)
chr6 (206-280)||(25935606-25935680)
chr6 (206-280)||(29487542-29487616)
chr6 (207-251)||(28898438-28898482)
[»] chr7 (6 HSPs)
chr7 (212-273)||(8307626-8307687)
chr7 (212-273)||(27425787-27425848)
chr7 (212-271)||(17611946-17612005)
chr7 (206-279)||(23991978-23992051)
chr7 (212-281)||(42195481-42195550)
chr7 (212-251)||(22326962-22327001)
[»] chr1 (11 HSPs)
chr1 (206-252)||(4624443-4624489)
chr1 (206-279)||(34475997-34476070)
chr1 (212-280)||(47550895-47550963)
chr1 (214-280)||(9098596-9098662)
chr1 (206-248)||(24135851-24135893)
chr1 (206-252)||(31032752-31032798)
chr1 (206-260)||(34808034-34808088)
chr1 (206-262)||(45010297-45010353)
chr1 (206-273)||(1270269-1270336)
chr1 (214-280)||(16254960-16255026)
chr1 (206-252)||(29095577-29095623)
[»] scaffold0002 (1 HSPs)
scaffold0002 (206-273)||(492764-492832)


Alignment Details
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 13686091 - 13686165
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||    
T  13686091 ggctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgccaattgtgtcttaaaaaattcttgatg 13686165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 207 - 280
Target Start/End: Original strand, 19899018 - 19899091
Alignment:
Q  207 gctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    |||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  19899018 gctgaaaattaggaagtgaacaaataaatcatgcaattaaaacttgccagttgtgtcttgaaaaattcgtgatg 19899091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 28716418 - 28716344
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||  |||||||| |||||    
T  28716418 ggctgaaaaataggaagtgaacaaataaataatgcaattaaaacttgccagttgtgtcttgaaaaattcttgatg 28716344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 14941082 - 14941014
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||||||||||||  |||||||| |||||    
T  14941082 aaaataagaagtgaacaaataaatcatgaaattaaaacttgccagttgtgtcttgaaaaattcttgatg 14941014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 3810364 - 3810312
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtct 264  Q
    |||||| ||||| |||||||||||||||||||||||||||||||| |||||||    
T  3810364 aaaataagaagtgaacaaataaatcatgcaattaaaacttgccagctgtgtct 3810312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 41464994 - 41464925
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatgt 281  Q
    ||||||| |||| |||||||||||||||||||||||||||| ||  |||||||  |||||||| ||||||    
T  41464994 aaaatagaaagtgaacaaataaatcatgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatgt 41464925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 45093244 - 45093176
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    |||||||||||||||||| |||||||||||||||||| || |||  ||| ||| ||||||||| |||||    
T  45093244 aaaataggaagtaaacaattaaatcatgcaattaaaatttcccaactgtatcttaaaaaattcttgatg 45093176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 28429385 - 28429430
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagt 257  Q
    |||||| ||||| |||||||||||||||||||||||||||| ||||    
T  28429385 aaaataagaagtgaacaaataaatcatgcaattaaaacttgtcagt 28429430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 25415011 - 25415079
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattc 274  Q
    ||||| |||| || |||| |||||||||||||||||||||||||||  ||| |||||||  ||||||||    
T  25415011 ggctgaaaaaaagaaagtgaacaaataaatcatgcaattaaaacttatcagctgtgtcttgaaaaattc 25415079  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 42263929 - 42263997
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtc-tgaaaaaatt 273  Q
    ||||| |||||||||| | ||||||||||| |||||||||||||||| | || ||||| ||||||||||    
T  42263929 ggctgaaaaataggaaatgaacaaataaattatgcaattaaaacttgactgtcgtgtcttgaaaaaatt 42263997  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 250
Target Start/End: Complemental strand, 29689315 - 29689277
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaact 250  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  29689315 aaaataggaagtgaactaataaatcatgcaattaaaact 29689277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 274
Target Start/End: Complemental strand, 40126595 - 40126533
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattc 274  Q
    |||||||||||| |||||||||||||| ||||||||| |||  || ||| ||| |||||||||    
T  40126595 aaaataggaagtgaacaaataaatcatacaattaaaatttgtgagctgtatcttaaaaaattc 40126533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 35323557 - 35323508
Alignment:
Q  225 aacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattc 274  Q
    |||| |||||||||| |||||||||||| ||  |||||||||||||||||    
T  35323557 aacatataaatcatgtaattaaaacttgtcaactgtgtctgaaaaaattc 35323508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 35676338 - 35676298
Alignment:
Q  240 caattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    ||||||||||||||||||||||||| |||||| || |||||    
T  35676338 caattaaaacttgccagttgtgtctaaaaaaaatcttgatg 35676298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 18375486 - 18375418
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||| |||||    
T  18375486 aaaataggaagtgaacaaataaatcatgcaattaaaacttgccagttgtgtcttgaaaaattcttgatg 18375418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 41878614 - 41878688
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||  |||||||| |||||    
T  41878614 ggctgaaaaataggaagtaaacaaataaatcatgcaattaaaacttgtcagttatgtcttgaaaaattcttgatg 41878688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 54358210 - 54358284
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||  | |||||  |||||||| |||||    
T  54358210 ggctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgccaactatgtcttgaaaaattcttgatg 54358284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 17847637 - 17847569
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    ||||||| |||| |||||||||||||||||||||||||||||||  |||||||  |||||||| |||||    
T  17847637 aaaatagaaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatg 17847569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 4512258 - 4512215
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgcca 255  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  4512258 aaaataggaagtaaacaaataaatgatgcaattaaaacttgcca 4512215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 24683180 - 24683219
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaactt 251  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  24683180 aaaataggaagtgaacaaataaatcatgcaattaaaactt 24683219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 47281627 - 47281588
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaactt 251  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  47281627 aaaataggaagtgaacaaataaatcatgcaattaaaactt 47281588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 26179311 - 26179238
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgat 279  Q
    ||||| |||||||||||| ||||||||||||||  |||| ||||||| ||| ||||| | ||||||||| ||||    
T  26179311 ggctgaaaaataggaagtgaacaaataaatcatcaaattgaaacttgacagctgtgttttaaaaaattcttgat 26179238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 23348203 - 23348147
Alignment:
Q  217 aggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaatt 273  Q
    ||||||| |||||||||||||||||||||||||||| | ||||| |||  |||||||    
T  23348203 aggaagtgaacaaataaatcatgcaattaaaacttgtcggttgtttcttgaaaaatt 23348147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 37674101 - 37674055
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttg 252  Q
    ||||| ||||||  |||| ||||||||||||||||||||||||||||    
T  37674101 ggctgaaaaataaaaagttaacaaataaatcatgcaattaaaacttg 37674055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 1561356 - 1561283
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgat 279  Q
    ||||| |||||||||||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||    
T  1561356 ggctgaaaaataggaagtgaacaaataaatcatgcaattgaaacttgtcagctgtgtctgaaaaaattcttgat 1561283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 521865 - 521791
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||| ||  ||||||| ||||||||| |||||    
T  521865 ggctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttgacaactgtgtcttaaaaaattcttgatg 521791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 36517618 - 36517661
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgcca 255  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  36517618 aaaataggaagtgaacaaataaatcatgcaattaaaacttgcca 36517661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 20912271 - 20912339
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    |||||||||||| |||||||||||||||||||||||||||  ||| | |||||  |||||||| |||||    
T  20912271 aaaataggaagtgaacaaataaatcatgcaattaaaacttatcagctatgtctttaaaaattcttgatg 20912339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 38176490 - 38176422
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattc 274  Q
    ||||| |||||| ||||| |||||||||| ||||||||||||||||||||  |||||||  ||||||||    
T  38176490 ggctgaaaaatatgaagtgaacaaataaaacatgcaattaaaacttgccaactgtgtcttgaaaaattc 38176422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 31788409 - 31788471
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattc 274  Q
    |||||||||||| |||||||||||| |||| |||||||||| || ||||||||  ||||||||    
T  31788409 aaaataggaagtgaacaaataaatcttgcagttaaaacttgtcaattgtgtcttgaaaaattc 31788471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 34624577 - 34624535
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaa 248  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  34624577 ggctgaaaaataggaagtgaacaaataaatcatgcaattaaaa 34624535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 22650482 - 22650427
Alignment:
Q  220 aagtaaacaaataaatcatgcaattaaaacttgccag--ttgtgtctgaaaaaatt 273  Q
    |||| ||||||||||||||||||||||||||||| ||   ||||||||||||||||    
T  22650482 aagtgaacaaataaatcatgcaattaaaacttgcgagctgtgtgtctgaaaaaatt 22650427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 23643074 - 23643006
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    |||||||||||| ||||||||||| ||| |||||||| ||| ||| |||||||  |||||||| |||||    
T  23643074 aaaataggaagtgaacaaataaattatggaattaaaatttgtcagctgtgtcttgaaaaattcttgatg 23643006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 45166324 - 45166398
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    ||||| |||||||| |||  ||||||||||||||||||||||| ||||||  || ||||  |||||||| |||||    
T  45166324 ggctgaaaaatagggagtggacaaataaatcatgcaattaaaatttgccaactgcgtcttgaaaaattcttgatg 45166398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 50612961 - 50612901
Alignment:
Q  220 aagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    |||| ||||||||||| |||||||||||||||| ||| ||||| |  |||||||| |||||    
T  50612961 aagtgaacaaataaattatgcaattaaaacttgtcagctgtgtattgaaaaattcttgatg 50612901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 51297120 - 51297084
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaa 248  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  51297120 aaaatagaaagtgaacaaataaatcatgcaattaaaa 51297084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 52546846 - 52546886
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttg 252  Q
    |||||||||| | ||||||||||| ||||||||||||||||    
T  52546846 aaaataggaaatgaacaaataaattatgcaattaaaacttg 52546886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 36473150 - 36473075
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatgt 281  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||| ||| ||||||||  |||||||| ||||||    
T  36473150 ggctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttaccaattgtgtcttgaaaaattcttgatgt 36473075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 4851831 - 4851877
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttg 252  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||    
T  4851831 ggctgaaaaataggaaataaacaaataaatcatgcaattaaaacttg 4851877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 15562015 - 15561941
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    ||||| |||||||||||| |||||||||||||| ||||||||||||||||  ||| |||  |||||||| |||||    
T  15562015 ggctgaaaaataggaagtgaacaaataaatcatacaattaaaacttgccaactgtatcttgaaaaattcttgatg 15561941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 33888946 - 33889020
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    ||||| |||||||| ||| ||||||||||| |||||||||||||||| ||||||| |||  |||||||| |||||    
T  33888946 ggctgaaaaatagggagtgaacaaataaattatgcaattaaaacttgtcagttgtttcttgaaaaattcttgatg 33889020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 11643387 - 11643455
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgcca-gttgtgtctgaaaaaattcgtgat 279  Q
    |||||| ||||| |||||||||||||| ||||||||| |||||| | ||||||||||||||||| ||||    
T  11643387 aaaatacgaagtgaacaaataaatcatacaattaaaatttgccatgctgtgtctgaaaaaattcttgat 11643455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 1005693 - 1005739
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagtt 258  Q
    |||||||||||| ||||||||||| |||||||||||||||| |||||    
T  1005693 aaaataggaagtgaacaaataaattatgcaattaaaacttgtcagtt 1005739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 264
Target Start/End: Original strand, 39112746 - 39112804
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtct 264  Q
    ||||| ||||||| |||| |||||||||||||| ||||||||| |||||| ||||||||    
T  39112746 ggctgaaaaatagaaagtgaacaaataaatcatccaattaaaatttgccaattgtgtct 39112804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 11653798 - 11653737
Alignment:
Q  220 aagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatgt 281  Q
    |||| ||||||||||||||| |||||||||||| |||  |||||| ||||||||| ||||||    
T  11653798 aagtgaacaaataaatcatgtaattaaaacttgtcagccgtgtcttaaaaaattcttgatgt 11653737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 41322633 - 41322674
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgc 253  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  41322633 aaaataggaagttaacaattaaatcatgcaattaaaacttgc 41322674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 264
Target Start/End: Original strand, 2001745 - 2001803
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtct 264  Q
    ||||| |||||||  ||| ||||||||||||||| |||||||||||| ||| |||||||    
T  2001745 ggctggaaaatagatagtgaacaaataaatcatgtaattaaaacttggcagctgtgtct 2001803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 4391946 - 4391872
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    ||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||||  |||||||| |||||    
T  4391946 ggctgaaaaataggaagtgaacaaataaattatgcaattaaaacttgccagctgtgtcttgaaaaattcttgatg 4391872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 40925933 - 40926007
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    ||||| |||||||||||| |||||||||||||| ||||||||||||| ||| |||||||  |||||||| |||||    
T  40925933 ggctgaaaaataggaagtgaacaaataaatcatacaattaaaacttgtcagatgtgtcttgaaaaattcttgatg 40926007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 38614281 - 38614236
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaactt 251  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  38614281 ggctgaaaaataggaagtaaacaaataaatcatgcaattaaaactt 38614236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 34286691 - 34286759
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtc-tgaaaaaatt 273  Q
    ||||| |||||||||| | |||||||||||||||||||||||| ||| |||||||||| ||||||||||    
T  34286691 ggctgaaaaataggaaatgaacaaataaatcatgcaattaaaatttgtcagttgtgtcttgaaaaaatt 34286759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 3456856 - 3456907
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtc 263  Q
    |||||||||||| |||||||||||||||||||||||||||| | ||||||||    
T  3456856 aaaataggaagtgaacaaataaatcatgcaattaaaacttgtcggttgtgtc 3456907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 6614341 - 6614301
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttg 252  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  6614341 aaaataggaagtgaacaaataaatcatgcaattaaaacttg 6614301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 37094006 - 37093938
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    |||||||||||| ||||||||||| |||||||||||||||| ||  |||||||  |||||||| |||||    
T  37094006 aaaataggaagtgaacaaataaattatgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatg 37093938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 31644730 - 31644780
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgt 262  Q
    |||||||||||| |||||||||| |||||||||||||||| ||| ||||||    
T  31644730 aaaataggaagtgaacaaataaaccatgcaattaaaacttaccaattgtgt 31644780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 228135 - 228189
Alignment:
Q  220 aagtaaacaaataaatcatgcaattaaaacttgccagttgtgtc-tgaaaaaatt 273  Q
    |||| |||||||| |||||||||||||||||||  ||||||||| ||||||||||    
T  228135 aagtgaacaaatatatcatgcaattaaaacttgtaagttgtgtcttgaaaaaatt 228189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 5481450 - 5481524
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    ||||| ||||||  |||| ||||||||||||||||| |||||| || |||  ||||||| ||||||||| |||||    
T  5481450 ggctgaaaaataaaaagtgaacaaataaatcatgcagttaaaatttaccaactgtgtcttaaaaaattcttgatg 5481524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 32891281 - 32891339
Alignment:
Q  215 ataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaatt 273  Q
    ||||||||| |||||||||||||||||||||||| ||| ||  |||||||  |||||||    
T  32891281 ataggaagtgaacaaataaatcatgcaattaaaatttgtcaactgtgtcttgaaaaatt 32891339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 35672403 - 35672369
Alignment:
Q  214 aataggaagtaaacaaataaatcatgcaattaaaa 248  Q
    |||||||||| ||||||||||||||||||||||||    
T  35672403 aataggaagtgaacaaataaatcatgcaattaaaa 35672369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 11739320 - 11739275
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaactt 251  Q
    ||||| ||||||||| || ||||||||||| |||||||||||||||    
T  11739320 ggctgaaaaataggaggtgaacaaataaattatgcaattaaaactt 11739275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 29223567 - 29223612
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagt 257  Q
    |||||| |||||  ||||||||||||||||||||||||||| ||||    
T  29223567 aaaataagaagtgtacaaataaatcatgcaattaaaacttgtcagt 29223612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 8692612 - 8692664
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtct 264  Q
    ||||||| |||| || ||||||||||||||||||||| ||| ||| |||||||    
T  8692612 aaaatagaaagtgaataaataaatcatgcaattaaaatttgtcagctgtgtct 8692664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 7646869 - 7646802
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgat 279  Q
    |||||||||| | |||||||||||||||||||||||||||||||| |||||||  |||||||| ||||    
T  7646869 aaaataggaaatgaacaaataaatcatgcaattaaaacttgccagatgtgtcttgaaaaattcctgat 7646802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 25935606 - 25935680
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    ||||| ||||||| |||| ||  ||||||||||| |||||||||||||||| |||||||  |||||||| |||||    
T  25935606 ggctgaaaaatagaaagtgaaagaataaatcatgtaattaaaacttgccagctgtgtcttgaaaaattcttgatg 25935680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 29487616 - 29487542
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    ||||| |||||||| ||| ||||||||||||||||||| || |||| |||  |||||||| |||||||| |||||    
T  29487616 ggctgaaaaatagggagtgaacaaataaatcatgcaatcaacacttaccaactgtgtctggaaaaattcttgatg 29487542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 28898482 - 28898438
Alignment:
Q  207 gctgcaaaataggaagtaaacaaataaatcatgcaattaaaactt 251  Q
    |||| |||||||| ||| |||||||||||||||||||||||||||    
T  28898482 gctgtaaaatagggagtgaacaaataaatcatgcaattaaaactt 28898438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 8307626 - 8307687
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaatt 273  Q
    |||||||||||| ||||||||||||||||| |||||| |||||||||||||||  |||||||    
T  8307626 aaaataggaagtgaacaaataaatcatgcagttaaaatttgccagttgtgtcttgaaaaatt 8307687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 27425848 - 27425787
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaatt 273  Q
    |||||||||||| |||||||||||||||||||||||||||||||  |||||||  |||||||    
T  27425848 aaaataggaagtgaacaaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaatt 27425787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 17611946 - 17612005
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaa 271  Q
    |||||||||||| || ||||||||||| ||||||||||||| ||||||||||| ||||||    
T  17611946 aaaataggaagtgaataaataaatcatacaattaaaacttgtcagttgtgtcttaaaaaa 17612005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 23992051 - 23991978
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgat 279  Q
    ||||| ||||||| |||| |||||| | ||||||||||||||||||| |||||||||||  |||||||| ||||    
T  23992051 ggctgaaaaatagaaagtgaacaaaaatatcatgcaattaaaacttgtcagttgtgtcttgaaaaattcttgat 23991978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 42195481 - 42195550
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatgt 281  Q
    |||||| | ||| |||||||||||||||||||||||||||   |||||| ||| ||||||||| ||||||    
T  42195481 aaaataaggagtgaacaaataaatcatgcaattaaaactttttagttgtatcttaaaaaattcttgatgt 42195550  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 22326962 - 22327001
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaactt 251  Q
    ||||||| |||| |||||||||||||||||||||||||||    
T  22326962 aaaatagaaagtgaacaaataaatcatgcaattaaaactt 22327001  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 4624443 - 4624489
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttg 252  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||    
T  4624443 ggctgaaaaataggaagtgaacaaataaatcatgcaattaaaacttg 4624489  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 34475997 - 34476070
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgat 279  Q
    ||||| |||||||||||| ||||||| |||||||||||||||||||| ||| | |||||  |||||||| ||||    
T  34475997 ggctgaaaaataggaagtgaacaaatcaatcatgcaattaaaacttgtcagctttgtcttgaaaaattcttgat 34476070  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 47550895 - 47550963
Alignment:
Q  212 aaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    |||||||||| | |||| ||||||||||||||||||||||||||| ||| |||  |||||||| |||||    
T  47550895 aaaataggaaatgaacatataaatcatgcaattaaaacttgccagctgtttcttgaaaaattcttgatg 47550963  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 280
Target Start/End: Complemental strand, 9098662 - 9098596
Alignment:
Q  214 aataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    |||| ||||| |||||||||||||||||||||||||||| ||| ||||| |  |||||||| |||||    
T  9098662 aatacgaagtgaacaaataaatcatgcaattaaaacttgtcagctgtgttttgaaaaattcttgatg 9098596  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 24135851 - 24135893
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaa 248  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  24135851 ggctgaaaaataggaagtgaacaaataaatcatgcaattaaaa 24135893  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 31032798 - 31032752
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttg 252  Q
    ||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  31032798 ggctgaaaaatagaaagtgaacaaataaatcatgcaattaaaacttg 31032752  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 34808034 - 34808088
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgt 260  Q
    ||||| |||||| ||||| || |||||||||||||||||||||||||| ||||||    
T  34808034 ggctgaaaaatatgaagtgaataaataaatcatgcaattaaaacttgctagttgt 34808088  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 45010297 - 45010353
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgt 262  Q
    ||||| |||||| ||||| |||||||||||||||||||||||| ||| ||| |||||    
T  45010297 ggctgaaaaataagaagtgaacaaataaatcatgcaattaaaatttgtcagatgtgt 45010353  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 1270269 - 1270336
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaatt 273  Q
    ||||| |||||||||||| || ||||||||| ||||||||||||||| ||  |||||||  |||||||    
T  1270269 ggctgaaaaataggaagtgaataaataaatcgtgcaattaaaacttgtcaactgtgtcttgaaaaatt 1270336  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 16254960 - 16255026
Alignment:
Q  214 aataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtctgaaaaaattcgtgatg 280  Q
    |||||||||| |||||||||||||| ||||||||  ||| ||||||||| |  |||||||| |||||    
T  16254960 aataggaagtgaacaaataaatcatacaattaaattttgtcagttgtgtattgaaaaattcttgatg 16255026  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 29095623 - 29095577
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttg 252  Q
    ||||| |||||||||||| |||||| | |||||||||||||||||||    
T  29095623 ggctgaaaaataggaagtgaacaaagatatcatgcaattaaaacttg 29095577  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 492764 - 492832
Alignment:
Q  206 ggctgcaaaataggaagtaaacaaataaatcatgcaattaaaacttgccagttgtgtc-tgaaaaaatt 273  Q
    ||||| |||||||||| | ||||||||||| |||||||||||||||| | || ||||| ||||||||||    
T  492764 ggctgaaaaataggaaatgaacaaataaattatgcaattaaaacttgactgtcgtgtcttgaaaaaatt 492832  T

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