View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9945_high_5 (Length: 292)
Name: NF9945_high_5
Description: NF9945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9945_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 4841482 - 4841297
Alignment:
| Q |
7 |
ggtttctgaaatttacgtttgaacatcagcggtagcatggtgtaaacattttgcagattacctccc----gcgttacaaataacatatttgatttgaaga |
102 |
Q |
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| T |
4841482 |
ggtttctgaaatttacgtttgaacatcagcggcagcatggtgtaaacattttgcagattacctacctcctgcgttagaaataacatatttgatttgaaga |
4841383 |
T |
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| Q |
103 |
tcaatatcttgaatatgaacaaacggtacaagattgcataaaggatcctttagcaaccaaggttcgtaccatacaccggtggtgcc |
188 |
Q |
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| T |
4841382 |
tcaatatcttgaatatgtacaaatggtacaagatggtataaaggatcctttagcaaccaaggttcgtaccatacaccggtggtgcc |
4841297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 264
Target Start/End: Complemental strand, 4839469 - 4839398
Alignment:
| Q |
193 |
ccatccttcatcatttgaaaggctttaacaatagcattcaaaataggtgagctcttactatttttcgcaagg |
264 |
Q |
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| T |
4839469 |
ccatccttcatcatttgaaaggctttaacaatagcattccaaacaggtgagcccttgccatttctcgcaagg |
4839398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 48542882 - 48542804
Alignment:
| Q |
94 |
atttgaagatcaatatcttgaatatgaacaaacggtacaagattgcataaaggatcctttagcaaccaaggttcgtacc |
172 |
Q |
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| T |
48542882 |
atttgaagatcaatatcttgtatttgaacaaatgacacaagatgacatacatgatcttttagcaaccaaggttcgtacc |
48542804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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