View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9945_high_6 (Length: 248)
Name: NF9945_high_6
Description: NF9945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9945_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 64 - 240
Target Start/End: Original strand, 9825995 - 9826165
Alignment:
| Q |
64 |
tttcttccaaagggggcaatatgttatattttcgaatggaagggttccacaaaacagcgatgctttcacggtaaggccccacatgtacagttaaacaaaa |
163 |
Q |
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| T |
9825995 |
tttcttccaaagggggcaatatgttatattttcgaatggaagggttccacaaaacagcgatgctttcacggtaaggcccc------acagttaaacaaaa |
9826088 |
T |
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| Q |
164 |
gattccgtcgcaaaaggcatctatgctaatactatcatcaaaatagttttcatcatggagagggaatgtgatctctg |
240 |
Q |
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| T |
9826089 |
gattccgtcgcaaaaggcaactatgctaatacgatcatcaaaatagttttcaccatggagagggaatgtgatctctg |
9826165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 9820333 - 9820393
Alignment:
| Q |
64 |
tttcttccaaagggggcaatatgttatattttcgaatggaagggttccacaaaacagcgat |
124 |
Q |
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| T |
9820333 |
tttcttccaaaggaggcaatatgttatattttctaatggaagggttccacaaaacagcgat |
9820393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 771953 - 772006
Alignment:
| Q |
68 |
ttccaaagggggcaatatgttatattttcgaatggaagggttccacaaaacagc |
121 |
Q |
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| T |
771953 |
ttccaaaggaggcaatatcttgaatttttgaatggaagggttccacaaaacagc |
772006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 9595048 - 9595099
Alignment:
| Q |
68 |
ttccaaagggggcaatatgttatattttcgaatggaagggttccacaaaaca |
119 |
Q |
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| T |
9595048 |
ttccaaaggaggcaataacttaaattttctaatggaagggttccacaaaaca |
9595099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 2635319 - 2635273
Alignment:
| Q |
68 |
ttccaaagggggcaatatgttatattttcgaatggaagggttccaca |
114 |
Q |
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| T |
2635319 |
ttccaaagggggcaataacttacattttctaatggaagggttccaca |
2635273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 2455470 - 2455417
Alignment:
| Q |
68 |
ttccaaagggggcaatatgttatattttcgaatggaagggttccacaaaacagc |
121 |
Q |
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| T |
2455470 |
ttccaaaggaggcaatatcttgaattctccaatggaagggttccacaaaacagc |
2455417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 2474750 - 2474701
Alignment:
| Q |
68 |
ttccaaagggggcaatatgttatattttcgaatggaagggttccacaaaa |
117 |
Q |
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| T |
2474750 |
ttccaaaggaggcaataacttaaattttccaatggaagggttccacaaaa |
2474701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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