View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9945_low_1 (Length: 558)
Name: NF9945_low_1
Description: NF9945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9945_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 12 - 540
Target Start/End: Original strand, 4274298 - 4274828
Alignment:
| Q |
12 |
gtttggagttaaaggattggaacacgccaggaaaaatttaaagattgtttagtttaagaaaaacaaattcggattaacatttaggnnnnnnnn-ttattg |
110 |
Q |
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| T |
4274298 |
gtttggaattaaaggattggaacacgcaaggaaaaatttaaagattgtttagtttaagaaaaacaaattcggattaacatttaggaaaaaaaaattattg |
4274397 |
T |
|
| Q |
111 |
gacttgttagaatattttgtcgttaacactatatgtatgacatgaactgagtcagtagataagaataaagggaataacataaatttttccatttacaaga |
210 |
Q |
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| T |
4274398 |
gacttattagaatattttgtcgtttacactatatgtatgacatgaactgagtcagtagataagaataaagggaataacataaatttttccatttacaaga |
4274497 |
T |
|
| Q |
211 |
ctcaacctcatatcgtacttaggagcaccaaactttcttgccacttgaaccaacattcgtcggtaaatttaaagatctttgaaatgacaatcgtaacatt |
310 |
Q |
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| T |
4274498 |
ttcaacctcatatcgtacttaggagcaccaaactttcttgccacttgaaccaacattcgtcggtaaatttaaagatctttgaaatgacaatcgtaacatt |
4274597 |
T |
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| Q |
311 |
aaggatagtaatggattgccacaatatc-aaaacttagagatcattacaaatcatgattgcaattgaaaatgcattagcaacaatcacattaatttgtga |
409 |
Q |
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| T |
4274598 |
aaggatagtaatggattgccacaatatcaaaaacttagagatcattacaaatcatgattgtaattgaaaatgcattagcaacaatcacattaatttgtga |
4274697 |
T |
|
| Q |
410 |
tttcatacaatatgtaggattgtatgaatcaccacaataataacggtaagacataatcgcaatcacaatcgtgactacaacacatcaattacaataacaa |
509 |
Q |
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| T |
4274698 |
tttcatacaatatgtaggattgtatgaatcaccacaataataacggtaagacataatcgcaatcacaatcgcgactacaatacatcaatcacaataacaa |
4274797 |
T |
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| Q |
510 |
tcataaacattgacaaaattcatgaatatta |
540 |
Q |
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| T |
4274798 |
tcataaacattgacaaaattcatgaatatta |
4274828 |
T |
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