View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9946_low_4 (Length: 355)
Name: NF9946_low_4
Description: NF9946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9946_low_4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 355
Target Start/End: Complemental strand, 15253691 - 15253353
Alignment:
| Q |
17 |
ccaccacctctccacttacctttacactcacaccctcaaatccggcacggtttgggttcgagtaatgcgtgacagcgaagttgacgctattgtttgcttg |
116 |
Q |
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| T |
15253691 |
ccaccacctctccacttacctttacactcacaccctcaaatccggcacggtttgggttcgagtaatgcgtgacagcgaagttgacgctattgtttgcttg |
15253592 |
T |
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| Q |
117 |
ctggcgaattctttcgctgaatcgatgatgtttccgaaagggtatattaatgtgttgaggtttcttgtgaaacagtatttgattgaaaggaggagtttga |
216 |
Q |
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| T |
15253591 |
ctggcgaattctttcgctgaatcgatgatgtttccgaaagggtatattaatgtgttgagatttcttgtgaaacagtatttgattgaaaggaggagtttga |
15253492 |
T |
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| Q |
217 |
tgccgcatatggcgacgttgattgcgttttataaaggaagtggtgttaatggtgatggtgaagaagaggaaatgcaattggctgggactgttgagatttc |
316 |
Q |
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| T |
15253491 |
tgccgcatatggcgacgttgattgcgttttataaaggaagtggtgttaatggtgatggtgaagaagaggaaatgcaattggctgggactgttgagatttc |
15253392 |
T |
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| Q |
317 |
ttttaatgtttgtggtgctaattctactcttccttcgcc |
355 |
Q |
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| T |
15253391 |
ttttaatgtttatggtgctaattctactcttccgtcgcc |
15253353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 72 - 255
Target Start/End: Complemental strand, 15248016 - 15247833
Alignment:
| Q |
72 |
gttcgagtaatgcgtgacagcgaagttgacgctattgtttgcttgctggcgaattctttcgctgaatcgatgatgtttccgaaagggtatattaatgtgt |
171 |
Q |
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| T |
15248016 |
gttcgagtaatgagagacaacgaagttgacccaattgtctgtttactcgcagatgctttcgctgaattgatgttgttcccgaaatgttatatcaacgttg |
15247917 |
T |
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| Q |
172 |
tgaggtttcttgtgaaacagtatttgattgaaaggaggagtttgatgccgcatatggcgacgttgattgcgttttataaaggaa |
255 |
Q |
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| T |
15247916 |
tgagattccttatgaaacaatatttgattaaacgaaggacgttgatgccgcatgtggcgacactgattgggttttatagaggaa |
15247833 |
T |
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