View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9946_low_8 (Length: 238)

Name: NF9946_low_8
Description: NF9946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9946_low_8
NF9946_low_8
[»] chr7 (5 HSPs)
chr7 (100-222)||(5230016-5230138)
chr7 (126-206)||(28470249-28470329)
chr7 (125-209)||(28500154-28500238)
chr7 (1-32)||(5230206-5230237)
chr7 (175-215)||(5251536-5251576)
[»] chr6 (1 HSPs)
chr6 (119-222)||(5652935-5653038)
[»] chr3 (2 HSPs)
chr3 (118-222)||(38396762-38396866)
chr3 (145-209)||(19142267-19142331)
[»] chr8 (2 HSPs)
chr8 (151-206)||(34830908-34830963)
chr8 (126-222)||(12811921-12812017)
[»] chr4 (1 HSPs)
chr4 (151-222)||(45671446-45671517)
[»] chr1 (2 HSPs)
chr1 (134-209)||(46039592-46039667)
chr1 (148-209)||(15609521-15609582)
[»] chr5 (1 HSPs)
chr5 (124-209)||(20543484-20543569)
[»] chr2 (1 HSPs)
chr2 (149-209)||(5546398-5546458)


Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 5230138 - 5230016
Alignment:
Q  100 tagattgcatacttagatgtgctacaaaattcataaagctttccacgagtagagaagatgataagagcaacctcggcatcacaaagaacagaaagttcat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5230138 tagattgcatacttagatgtgctacaaaattcataaagctttccacgagtggagaagatgataagagcaacctcagcatcacaaagaacagaaagttcat 5230039  T
Q  200 aagctttcttaagaagaccattt 222  Q
    |||||||||||||||||||||||    
T  5230038 aagctttcttaagaagaccattt 5230016  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 28470329 - 28470249
Alignment:
Q  126 aaattcataaagctttccacgagtagagaagatgataagagcaacctcggcatcacaaagaacagaaagttcataagcttt 206  Q
    ||||||| |||||||||||||| | ||||| ||||||||||||| ||| |||||||| ||||| || |||||||| |||||    
T  28470329 aaattcagaaagctttccacgacttgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttt 28470249  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 28500154 - 28500238
Alignment:
Q  125 aaaattcataaagctttccacgagtagagaagatgataagagcaacctcggcatcacaaagaacagaaagttcataagctttctt 209  Q
    ||||||||||||| ||||| |  | ||||||||||||||||||||| || |||||||| |||||||| || ||| | ||||||||    
T  28500154 aaaattcataaagttttcctcttggagagaagatgataagagcaacttcagcatcacagagaacagatagctcaaatgctttctt 28500238  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 5230237 - 5230206
Alignment:
Q  1 aatgaagcaagtacatatagatctaataggtc 32  Q
    ||||||||||||||||||||||||||||||||    
T  5230237 aatgaagcaagtacatatagatctaataggtc 5230206  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 5251576 - 5251536
Alignment:
Q  175 gcatcacaaagaacagaaagttcataagctttcttaagaag 215  Q
    ||||||||||||||||||| ||||| ||||||||| |||||    
T  5251576 gcatcacaaagaacagaaatttcattagctttcttgagaag 5251536  T

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Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 5653038 - 5652935
Alignment:
Q  119 tgctacaaaattcataaagctttccacgagtagagaagatgataagagcaacctcggcatcacaaagaacagaaagttcataagctttcttaagaagacc 218  Q
    |||||||||| ||||||||||| || | | | |||||||| ||||||||||| || ||||||||||||||||| | ||||||||||||||||||||| ||    
T  5653038 tgctacaaaactcataaagcttgcctctattggagaagataataagagcaacttcagcatcacaaagaacagataattcataagctttcttaagaagtcc 5652939  T
Q  219 attt 222  Q
    ||||    
T  5652938 attt 5652935  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 38396866 - 38396762
Alignment:
Q  118 gtgctacaaaattcataaagctttccacgagtagagaagatgataagagcaacctcggcatcacaaagaacagaaagttcataagctttcttaagaagac 217  Q
    ||||| ||||| ||||| || ||||| | | | ||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| || | |||||    
T  38396866 gtgctgcaaaactcatagagttttcctctattggagaagacgatgagagcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagac 38396767  T
Q  218 cattt 222  Q
    |||||    
T  38396766 cattt 38396762  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 19142267 - 19142331
Alignment:
Q  145 cgagtagagaagatgataagagcaacctcggcatcacaaagaacagaaagttcataagctttctt 209  Q
    ||||| |||||||  | ||||||||| ||||||||||||||||| || | |||||||||||||||    
T  19142267 cgagtggagaagacaacaagagcaacttcggcatcacaaagaacggataattcataagctttctt 19142331  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 34830908 - 34830963
Alignment:
Q  151 gagaagatgataagagcaacctcggcatcacaaagaacagaaagttcataagcttt 206  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  34830908 gagaagatgataagagcaacttcagcatcacaaagaacagaaagttcataagcttt 34830963  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 12811921 - 12812017
Alignment:
Q  126 aaattcataaagctttccacgagtagagaagatgataagagcaacctcggcatcacaaagaacagaaagttcataagctttcttaagaagaccattt 222  Q
    ||||||||| || || |||||  ||||||| |||||||| ||||| || |||||||| |||||||| ||||||||||||||||| || | |||||||    
T  12811921 aaattcatagagtttgccacggctagagaaaatgataagggcaacttcagcatcacagagaacagacagttcataagctttcttgagcaaaccattt 12812017  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 45671517 - 45671446
Alignment:
Q  151 gagaagatgataagagcaacctcggcatcacaaagaacagaaagttcataagctttcttaagaagaccattt 222  Q
    |||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||| || | |||||||    
T  45671517 gagaagatgataagagcaacttcagcatcacaaagaactgaaagttcataagccttcttgagtacaccattt 45671446  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 46039592 - 46039667
Alignment:
Q  134 aaagctttccacgagtagagaagatgataagagcaacctcggcatcacaaagaacagaaagttcataagctttctt 209  Q
    ||||||| ||| || | |||||||||||||||||||| || |||||||| |  |||||||||||| ||||||||||    
T  46039592 aaagcttgccaagactggagaagatgataagagcaacttcagcatcacataacacagaaagttcaaaagctttctt 46039667  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 15609582 - 15609521
Alignment:
Q  148 gtagagaagatgataagagcaacctcggcatcacaaagaacagaaagttcataagctttctt 209  Q
    |||||||| | ||||| ||||||||||||||||||||||| ||| | ||| | |||||||||    
T  15609582 gtagagaatacgataacagcaacctcggcatcacaaagaatagacaattcttgagctttctt 15609521  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 209
Target Start/End: Original strand, 20543484 - 20543569
Alignment:
Q  124 caaaattcataaagctttccacgagtagagaagatgataagagcaacctcggcatcacaaagaacagaaagttcataagctttctt 209  Q
    ||||| ||||| || ||||||||  ||||||| || || ||||||||||| ||||||||||| | ||| ||||||||||| |||||    
T  20543484 caaaactcatagagttttccacggctagagaaaataatgagagcaacctcagcatcacaaaggagagagagttcataagccttctt 20543569  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 5546458 - 5546398
Alignment:
Q  149 tagagaagatgataagagcaacctcggcatcacaaagaacagaaagttcataagctttctt 209  Q
    |||||||||  ||||||||||| || ||||||||||||||||| | |||||| ||||||||    
T  5546458 tagagaagactataagagcaacttctgcatcacaaagaacagataattcatatgctttctt 5546398  T

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