View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9946_low_9 (Length: 232)

Name: NF9946_low_9
Description: NF9946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9946_low_9
NF9946_low_9
[»] chr6 (17 HSPs)
chr6 (17-79)||(34996669-34996731)
chr6 (17-79)||(3000701-3000763)
chr6 (17-75)||(27719883-27719941)
chr6 (17-79)||(32348945-32349007)
chr6 (17-79)||(34995499-34995561)
chr6 (18-79)||(21095287-21095348)
chr6 (16-79)||(32347955-32348018)
chr6 (17-79)||(21094553-21094615)
chr6 (17-79)||(32713791-32713853)
chr6 (17-79)||(11801250-11801312)
chr6 (17-79)||(19383063-19383124)
chr6 (17-79)||(32712503-32712565)
chr6 (18-79)||(18573033-18573094)
chr6 (32-79)||(18574221-18574268)
chr6 (32-79)||(29477903-29477950)
chr6 (178-212)||(32348101-32348135)
chr6 (185-214)||(11801135-11801164)
[»] chr5 (17 HSPs)
chr5 (17-79)||(12372462-12372524)
chr5 (17-79)||(12373625-12373687)
chr5 (17-79)||(13278139-13278201)
chr5 (17-79)||(19228986-19229048)
chr5 (32-79)||(6803533-6803580)
chr5 (17-72)||(18654445-18654500)
chr5 (17-67)||(9083216-9083266)
chr5 (17-79)||(19229981-19230043)
chr5 (34-80)||(39164219-39164265)
chr5 (17-79)||(39350553-39350615)
chr5 (17-72)||(4031969-4032024)
chr5 (17-79)||(4032933-4032995)
chr5 (17-79)||(39349628-39349690)
chr5 (17-71)||(9082127-9082181)
chr5 (178-212)||(19229864-19229898)
chr5 (146-214)||(13278024-13278091)
chr5 (17-73)||(18655566-18655622)
[»] chr3 (46 HSPs)
chr3 (17-79)||(35758152-35758214)
chr3 (17-79)||(35759139-35759201)
chr3 (17-79)||(37610671-37610733)
chr3 (18-79)||(52522075-52522136)
chr3 (146-214)||(21728165-21728232)
chr3 (17-79)||(5689867-5689929)
chr3 (21-79)||(17740982-17741040)
chr3 (21-79)||(19042302-19042360)
chr3 (17-79)||(28777595-28777657)
chr3 (17-79)||(31937183-31937245)
chr3 (17-79)||(43393961-43394023)
chr3 (17-79)||(46903532-46903594)
chr3 (17-79)||(28776596-28776658)
chr3 (17-79)||(31938216-31938277)
chr3 (18-79)||(47429771-47429832)
chr3 (146-214)||(50879952-50880019)
chr3 (17-73)||(53180718-53180774)
chr3 (19-79)||(55209931-55209991)
chr3 (17-79)||(10978153-10978214)
chr3 (17-79)||(17116349-17116411)
chr3 (17-79)||(47431095-47431157)
chr3 (17-79)||(50879835-50879897)
chr3 (22-79)||(46902484-46902541)
chr3 (18-79)||(47917521-47917582)
chr3 (19-79)||(11346962-11347022)
chr3 (19-79)||(21729096-21729156)
chr3 (156-212)||(55210048-55210104)
chr3 (17-68)||(5691014-5691065)
chr3 (17-79)||(11348380-11348441)
chr3 (22-76)||(21728063-21728117)
chr3 (17-67)||(54353171-54353221)
chr3 (33-79)||(55210816-55210862)
chr3 (158-211)||(11348271-11348324)
chr3 (30-79)||(53101683-53101732)
chr3 (19-79)||(2232752-2232812)
chr3 (178-214)||(28776737-28776773)
chr3 (158-214)||(47430973-47431029)
chr3 (19-75)||(50881028-50881084)
chr3 (32-75)||(43392769-43392812)
chr3 (33-79)||(2233213-2233259)
chr3 (17-79)||(23073282-23073344)
chr3 (17-79)||(33111753-33111815)
chr3 (17-79)||(37609469-37609531)
chr3 (17-79)||(53764898-53764959)
chr3 (32-70)||(54354308-54354346)
chr3 (19-79)||(10979083-10979143)
[»] chr7 (37 HSPs)
chr7 (18-79)||(44748471-44748532)
chr7 (17-79)||(18788468-18788530)
chr7 (17-79)||(45399918-45399980)
chr7 (17-79)||(7011782-7011844)
chr7 (17-79)||(7027140-7027202)
chr7 (17-79)||(9391667-9391729)
chr7 (17-79)||(9392723-9392785)
chr7 (17-79)||(19217775-19217837)
chr7 (17-79)||(37237136-37237198)
chr7 (17-79)||(43113822-43113884)
chr7 (17-79)||(43961081-43961143)
chr7 (18-79)||(44417606-44417667)
chr7 (17-73)||(32518560-32518616)
chr7 (17-79)||(13597291-13597353)
chr7 (21-75)||(29186816-29186870)
chr7 (17-79)||(43962477-43962539)
chr7 (17-79)||(44420431-44420492)
chr7 (18-79)||(13599165-13599226)
chr7 (32-79)||(29187938-29187985)
chr7 (17-79)||(13750544-13750606)
chr7 (17-79)||(18787296-18787358)
chr7 (17-79)||(26005499-26005561)
chr7 (17-79)||(27072562-27072624)
chr7 (17-79)||(27205689-27205751)
chr7 (17-79)||(48793424-48793486)
chr7 (32-79)||(44231769-44231816)
chr7 (17-79)||(3537574-3537635)
chr7 (17-79)||(43114995-43115057)
chr7 (17-79)||(48792591-48792653)
chr7 (38-79)||(9357704-9357745)
chr7 (17-74)||(44746874-44746931)
chr7 (146-214)||(43114872-43114940)
chr7 (167-214)||(9392590-9392637)
chr7 (36-79)||(37235951-37235994)
chr7 (17-79)||(3538481-3538543)
chr7 (173-214)||(37236080-37236121)
chr7 (35-79)||(45398689-45398733)
[»] scaffold0878 (2 HSPs)
scaffold0878 (17-80)||(2933-2996)
scaffold0878 (17-79)||(1916-1978)
[»] chr2 (6 HSPs)
chr2 (17-80)||(27892243-27892306)
chr2 (17-79)||(16602873-16602935)
chr2 (17-79)||(27891254-27891316)
chr2 (33-79)||(5033623-5033669)
chr2 (18-79)||(38243863-38243924)
chr2 (39-79)||(38243050-38243090)
[»] chr4 (28 HSPs)
chr4 (17-79)||(35927024-35927086)
chr4 (19-79)||(7261451-7261511)
chr4 (17-79)||(8815265-8815327)
chr4 (17-75)||(36074706-36074764)
chr4 (17-79)||(38032328-38032390)
chr4 (23-79)||(56234929-56234985)
chr4 (32-79)||(18091743-18091790)
chr4 (17-79)||(17356509-17356571)
chr4 (17-79)||(22622015-22622077)
chr4 (17-79)||(23757878-23757940)
chr4 (17-79)||(34095567-34095629)
chr4 (17-79)||(38031316-38031378)
chr4 (18-75)||(8814283-8814340)
chr4 (17-77)||(22623053-22623113)
chr4 (17-79)||(10803037-10803099)
chr4 (17-79)||(10804103-10804165)
chr4 (18-79)||(35925840-35925901)
chr4 (146-214)||(10803154-10803222)
chr4 (17-79)||(48501232-48501294)
chr4 (18-75)||(5433319-5433376)
chr4 (146-214)||(18091845-18091914)
chr4 (18-79)||(48081475-48081536)
chr4 (39-79)||(56233878-56233918)
chr4 (33-79)||(34122729-34122775)
chr4 (178-212)||(38032211-38032245)
chr4 (33-79)||(48081288-48081334)
chr4 (16-74)||(35191964-35192019)
chr4 (166-214)||(43894490-43894538)
[»] chr1 (26 HSPs)
chr1 (17-79)||(38235058-38235120)
chr1 (17-79)||(7111383-7111445)
chr1 (17-79)||(21203159-21203221)
chr1 (17-79)||(51693295-51693357)
chr1 (17-79)||(52761504-52761566)
chr1 (20-80)||(51468490-51468550)
chr1 (17-68)||(1823215-1823266)
chr1 (32-79)||(52759526-52759573)
chr1 (33-79)||(47533762-47533808)
chr1 (17-79)||(52086773-52086835)
chr1 (17-74)||(5488780-5488837)
chr1 (17-79)||(7110374-7110436)
chr1 (17-79)||(17244323-17244385)
chr1 (17-70)||(5488649-5488702)
chr1 (18-75)||(45229515-45229572)
chr1 (19-79)||(51468809-51468869)
chr1 (17-67)||(18819410-18819460)
chr1 (17-67)||(40187750-40187800)
chr1 (17-74)||(1822057-1822114)
chr1 (18-79)||(50483660-50483720)
chr1 (146-214)||(52759628-52759697)
chr1 (178-214)||(7111268-7111304)
chr1 (19-70)||(50484913-50484964)
chr1 (17-79)||(45228423-45228485)
chr1 (173-214)||(17244471-17244512)
chr1 (178-214)||(51468688-51468724)
[»] scaffold0349 (1 HSPs)
scaffold0349 (17-75)||(9305-9363)
[»] chr8 (21 HSPs)
chr8 (17-79)||(30640945-30641007)
chr8 (17-79)||(41636979-41637041)
chr8 (32-79)||(9245339-9245386)
chr8 (21-75)||(9244217-9244271)
chr8 (18-79)||(522005-522066)
chr8 (32-79)||(20309086-20309133)
chr8 (32-79)||(21095719-21095766)
chr8 (17-80)||(34642812-34642875)
chr8 (17-79)||(20309959-20310021)
chr8 (17-79)||(21096592-21096654)
chr8 (17-75)||(26364889-26364947)
chr8 (17-79)||(26366102-26366164)
chr8 (32-79)||(22012300-22012347)
chr8 (32-79)||(22013167-22013214)
chr8 (17-80)||(30644612-30644675)
chr8 (17-79)||(43584556-43584618)
chr8 (32-79)||(31203078-31203125)
chr8 (32-79)||(43133976-43134023)
chr8 (33-79)||(3714447-3714493)
chr8 (32-74)||(34643878-34643920)
chr8 (19-75)||(43585857-43585913)
[»] scaffold0141 (2 HSPs)
scaffold0141 (17-70)||(31181-31234)
scaffold0141 (17-70)||(35202-35255)
[»] scaffold0049 (2 HSPs)
scaffold0049 (17-70)||(83578-83631)
scaffold0049 (17-70)||(79557-79610)
[»] scaffold0026 (1 HSPs)
scaffold0026 (23-79)||(104405-104461)
[»] scaffold0018 (1 HSPs)
scaffold0018 (18-79)||(25252-25313)
[»] scaffold0084 (1 HSPs)
scaffold0084 (166-214)||(12887-12935)
[»] scaffold1425 (1 HSPs)
scaffold1425 (17-79)||(282-343)


Alignment Details
Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 34996731 - 34996669
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  34996731 cgttggattacgaaggtctatcagattttatagtgtatcaccaacacctaatttatttacttt 34996669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 3000763 - 3000701
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||    
T  3000763 cgttggattacgaaggtctatcagattttatagtgtatcactaacacctaatttatttacttt 3000701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 27719883 - 27719941
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttattta 75  Q
    |||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||    
T  27719883 cgttggattacggaggtctatcagattttatagtgtatcaccaacacctaatttattta 27719941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 32349007 - 32348945
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | ||||||||||||||||||||||||| || |||||||||||||||||||    
T  32349007 cgttggattacggaggtctatcagattttatagtgtatcatcaacacctaatttatttacttt 32348945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 34995499 - 34995561
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||| ||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||    
T  34995499 cgttagattacgaaggtctatcagattttatagtgtatcaccaacatctaatttatttacttt 34995561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 21095348 - 21095287
Alignment:
Q  18 gttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||| | ||||| |||||||||||||||||||||| |||||||||||||||||||    
T  21095348 gttggattacggaggtctaccagattttatagtgtatcaccaacacctaatttatttacttt 21095287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 32347955 - 32348018
Alignment:
Q  16 acgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||   ||||||||||||||||||||||||| || |||||||||||||||||||    
T  32347955 acgttggattacgggggtctatcagattttatagtgtatcatcaacacctaatttatttacttt 32348018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 21094553 - 21094615
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | |||||  ||||||||||||||||||||| |||||||||||||||||||    
T  21094553 cgttggattacggaggtctactagattttatagtgtatcaccaacacctaatttatttacttt 21094615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 32713853 - 32713791
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | |||||| |||||||| |||||||||||| |||||||||||||||||||    
T  32713853 cgttggattacggaggtctataagattttacagtgtatcaccaacacctaatttatttacttt 32713791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 11801312 - 11801250
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | |||||||| ||||||||||||||||  | |||||||||||||||||||    
T  11801312 cgttggattacggaggtctatcaaattttatagtgtatcattaacacctaatttatttacttt 11801250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 19383124 - 19383063
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||  ||||||||||||||||||||||||| || || ||||||||||||||||    
T  19383124 cgttggattacgatggtctatcagattttatagtgtatca-caacatctaatttatttacttt 19383063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 32712503 - 32712565
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | |||||||| ||||||||||||| ||||| ||||||| |||||||||||    
T  32712503 cgttggattacggaggtctatcaaattttatagtgtaccaccaacacctaacttatttacttt 32712565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 18573033 - 18573094
Alignment:
Q  18 gttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||| | |||||||| |||||| |||||||||||| ||| |||||||||||||||    
T  18573033 gttggattacggaggtctatcaaattttacagtgtatcaccaacacataatttatttacttt 18573094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 18574268 - 18574221
Alignment:
Q  32 gtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||||||||||| ||||| ||||  |||||||||||||    
T  18574268 gtctatcagattttatagtgtaccaccaacaccggatttatttacttt 18574221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 29477903 - 29477950
Alignment:
Q  32 gtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||| |||||||||| ||||||||||| ||||| |||||||||||||    
T  29477903 gtctaccagattttatggtgtatcaccaacacctgatttatttacttt 29477950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 32348101 - 32348135
Alignment:
Q  178 tttagtcactacaccaccatcattgtcatcttcat 212  Q
    |||| ||||||||||||||||||||||||||||||    
T  32348101 tttaatcactacaccaccatcattgtcatcttcat 32348135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 214
Target Start/End: Complemental strand, 11801164 - 11801135
Alignment:
Q  185 actacaccaccatcattgtcatcttcatct 214  Q
    ||||||||||||||||||||||||||||||    
T  11801164 actacaccaccatcattgtcatcttcatct 11801135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 12372462 - 12372524
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  12372462 cgttggattacgaaggtctatcagattttatagtgtatcaccaacacctaatttatttacttt 12372524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 12373687 - 12373625
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||    
T  12373687 cgttggattacgaatgtctatcagattttacactgtatcaccaacacctaatttatttacttt 12373625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 13278201 - 13278139
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||| | | |||||||||||||||||||||||||||| |||||||||||||||||||    
T  13278201 cgttggattagggaggtctatcagattttatagtgtatcaccaacacctaatttatttacttt 13278139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 19228986 - 19229048
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | |||||| |||||||||||||||||| || |||||||||||||||||||    
T  19228986 cgttggattacggaggtctattagattttatagtgtatcatcaacacctaatttatttacttt 19229048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 6803580 - 6803533
Alignment:
Q  32 gtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||    
T  6803580 gtctatcagattttatagtgtatcaccaacatctaatttatttacttt 6803533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 18654445 - 18654500
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttat 72  Q
    |||||||||||| | ||||||||||||||| |||||||||||| ||||||||||||    
T  18654445 cgttggattacggaggtctatcagattttacagtgtatcaccaacacctaatttat 18654500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 9083266 - 9083216
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaa 67  Q
    |||||||||||||| |||||| ||||||||||||||||||||| |||||||    
T  9083266 cgttggattacgaaggtctataagattttatagtgtatcaccaacacctaa 9083216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 19230043 - 19229981
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | |||||||| |||||||||||||||| || ||| |||||||||||||||    
T  19230043 cgttggattacggaggtctatcaaattttatagtgtatcatcaacacttaatttatttacttt 19229981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 39164219 - 39164265
Alignment:
Q  34 ctatcagattttatagtgtatcaccagcacctaatttatttactttt 80  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||    
T  39164219 ctatcaaattttatagtgtatcaccaacacctaatttatttactttt 39164265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 39350615 - 39350553
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | ||||||||||||||| |||||||||||| |||||||||| ||| ||||    
T  39350615 cgttggattacggaggtctatcagattttacagtgtatcaccaacacctaatttttttgcttt 39350553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 4031969 - 4032024
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttat 72  Q
    ||||| |||||| | ||||| |||||||||||||||||||||| ||||||||||||    
T  4031969 cgttgaattacggaagtctaccagattttatagtgtatcaccaacacctaatttat 4032024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 4032995 - 4032933
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | ||||||||||||||||| |||||||  | |||||| ||||||||||||    
T  4032995 cgttggattacggaggtctatcagattttataatgtatcattaacacctagtttatttacttt 4032933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 39349628 - 39349690
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||| ||||||| | |||||| ||||||||| ||| ||||||| |||||||||||||||||||    
T  39349628 cgtttgattacggaggtctattagattttatcgtggatcaccaacacctaatttatttacttt 39349690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 9082127 - 9082181
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaattta 71  Q
    |||||||| ||| ||||||||||||||||||||| |||| | | |||||||||||    
T  9082127 cgttggatcacggatgtctatcagattttatagtatatcgctaacacctaattta 9082181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 19229898 - 19229864
Alignment:
Q  178 tttagtcactacaccaccatcattgtcatcttcat 212  Q
    |||| ||||||||||||||||||||||||||||||    
T  19229898 tttaatcactacaccaccatcattgtcatcttcat 19229864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 13278091 - 13278024
Alignment:
Q  146 ataaaacccaaggaaaaaagataaacatactgtttagtcactacaccaccatcattgtcatcttcatct 214  Q
    |||||||||| | ||||||  ||||| |||| |||| | ||||||||||||||||||||||||| ||||    
T  13278091 ataaaaccca-gaaaaaaaattaaacctactatttaataactacaccaccatcattgtcatctttatct 13278024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 18655622 - 18655566
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatt 73  Q
    ||||| |||||||| |||||||||||||||  ||||||||||| ||  |||||||||    
T  18655622 cgttgaattacgaaagtctatcagattttacggtgtatcaccaacaattaatttatt 18655566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 35758152 - 35758214
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  35758152 cgttggattacgaatgtctatcagattttacagtgtatcaccaacacctaatttatttacttt 35758214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 35759201 - 35759139
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  35759201 cgttggattacgaatgtctatcagattttacagtgtatcaccaacacctaatttatttacttt 35759139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 37610733 - 37610671
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||    
T  37610733 cgttggattacggaggtctatcagattttatagtgtatcaccaacacctaatttatttacttt 37610671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 52522075 - 52522136
Alignment:
Q  18 gttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||    
T  52522075 gttggattacggaggtctatcagattttatagtgtatcaccaacacctaatttatttacttt 52522136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 21728165 - 21728232
Alignment:
Q  146 ataaaacccaaggaaaaaagataaacatactgtttagtcactacaccaccatcattgtcatcttcatct 214  Q
    |||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||    
T  21728165 ataaaaccca-ggaaaaaagataaacctactatttagtcactacaccaccatcattatcatcttcatct 21728232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 5689867 - 5689929
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | |||||||||||||||||||||||||||| ||| |||||||||||||||    
T  5689867 cgttggattacggaggtctatcagattttatagtgtatcaccaacacttaatttatttacttt 5689929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 17740982 - 17741040
Alignment:
Q  21 ggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||    
T  17740982 ggattacggaggtctatcagattttatagtgtatcaccaacacctaatttatttacttt 17741040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 19042302 - 19042360
Alignment:
Q  21 ggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||    
T  19042302 ggattacggaggtctatcagattttatagtgtatcaccaacacctaatttatttacttt 19042360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 28777657 - 28777595
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | ||||||||||||||||||||||||| || |||||||||||||||||||    
T  28777657 cgttggattacggaggtctatcagattttatagtgtatcatcaacacctaatttatttacttt 28777595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 31937183 - 31937245
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | |||||||||||||||||||||||||||| |||||||||| ||||||||    
T  31937183 cgttggattacggaggtctatcagattttatagtgtatcaccaacacctaatttttttacttt 31937245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 43394023 - 43393961
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | ||||||||||||||| |||||||||||| |||||||||||||||||||    
T  43394023 cgttggattacggaggtctatcagattttacagtgtatcaccaacacctaatttatttacttt 43393961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 46903594 - 46903532
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | |||||| ||||||||||||||||||||| |||||||||||||||||||    
T  46903594 cgttggattacggaggtctattagattttatagtgtatcaccaacacctaatttatttacttt 46903532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 28776596 - 28776658
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | ||||||||||||||||| ||||||| || |||||||||||||||||||    
T  28776596 cgttggattacggaggtctatcagattttataatgtatcatcaacacctaatttatttacttt 28776658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 31938277 - 31938216
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||| |||||| ||||||||||||||||||||| |||||||||| ||||||||    
T  31938277 cgttggattacgaaggtctataagattttatagtgtatcaccaacacctaattt-tttacttt 31938216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 47429771 - 47429832
Alignment:
Q  18 gttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||| | |||||| ||||||||||||||||||||| || ||||||||||||||||    
T  47429771 gttggattacggaggtctattagattttatagtgtatcaccaacatctaatttatttacttt 47429832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 50879952 - 50880019
Alignment:
Q  146 ataaaacccaaggaaaaaagataaacatactgtttagtcactacaccaccatcattgtcatcttcatct 214  Q
    ||||||||||||||||||| |||||| |||| |||| |||||||||||  |||||||||||||||||||    
T  50879952 ataaaacccaaggaaaaaa-ataaacctactatttaatcactacaccaatatcattgtcatcttcatct 50880019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 53180774 - 53180718
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatt 73  Q
    |||||||||||| | |||||||||||| ||||||||||||||| |||||||||||||    
T  53180774 cgttggattacggaggtctatcagattgtatagtgtatcaccaacacctaatttatt 53180718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 55209931 - 55209991
Alignment:
Q  19 ttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||| | |||||||||| |||||||||||| |||| |||||||||||||||||||    
T  55209931 ttggattacggaggtctatcagaatttatagtgtattaccaacacctaatttatttacttt 55209991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 10978153 - 10978214
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||| |||||| | ||||||||||||||||||| |||||||||| ||||||||    
T  10978153 cgttggattacgaaggtctataaaattttatagtgtatcaccatcacctaattt-tttacttt 10978214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 17116349 - 17116411
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | ||| |||||| ||||||||||||||||| ||||||||||||| |||||    
T  17116349 cgttggattacggaggtccatcagagtttatagtgtatcaccaacacctaatttattcacttt 17116411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 47431157 - 47431095
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||| | | |||||| ||||||||||||||||||||  |||||||||||||||||||    
T  47431157 cgttggattatggaggtctattagattttatagtgtatcacccacacctaatttatttacttt 47431095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 50879835 - 50879897
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||| ||||||| | |||||||||||||||||||||||||||| |||||||||| ||| ||||    
T  50879835 cgttagattacggaggtctatcagattttatagtgtatcaccaacacctaatttgtttccttt 50879897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 46902484 - 46902541
Alignment:
Q  22 gattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||| | |||||||||||||||||||||||||| | |||| ||||||||||||||    
T  46902484 gattacggaggtctatcagattttatagtgtatcactaacaccaaatttatttacttt 46902541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 47917582 - 47917521
Alignment:
Q  18 gttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||| | || |||||||||||||||||||| |||| |||| ||||||||||||||    
T  47917582 gttggattacggaggtttatcagattttatagtgtattaccaacaccgaatttatttacttt 47917521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 11346962 - 11347022
Alignment:
Q  19 ttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||| ||| ||||| || ||| ||||||||||||||| |||||||||||||||||||    
T  11346962 ttggattatgaaggtctaccatattgtatagtgtatcaccaacacctaatttatttacttt 11347022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 21729156 - 21729096
Alignment:
Q  19 ttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||| ||| ||||| || |||||||||||||||| || |||||||||||||||||||    
T  21729156 ttggattatgaaggtctaccatattttatagtgtatcatcaacacctaatttatttacttt 21729096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 55210048 - 55210104
Alignment:
Q  156 aggaaaaaagataaacatactgtttagtcactacaccaccatcattgtcatcttcat 212  Q
    ||||||||| |||||| |||| |||| |||||||||||||||| |||||||||||||    
T  55210048 aggaaaaaaaataaacctactatttaatcactacaccaccatctttgtcatcttcat 55210104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 5691065 - 5691014
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaat 68  Q
    |||||||||||| | ||||||||||||||| |||||||||||| ||||||||    
T  5691065 cgttggattacggaggtctatcagattttacagtgtatcaccaacacctaat 5691014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 11348441 - 11348380
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||| |||||| | ||||||||||||||||||| |||||||| ||||||||| |||||||||    
T  11348441 cgttgaattacggaggtctatcagattttatagtatatcacca-cacctaattaatttacttt 11348380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 21728063 - 21728117
Alignment:
Q  22 gattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttac 76  Q
    ||||||||| |||||||  |||||||| |||||||||| ||||||||||||||||    
T  21728063 gattacgaaggtctatctcattttataatgtatcaccaacacctaatttatttac 21728117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 54353171 - 54353221
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaa 67  Q
    |||||||||||||| |||||||||||||||| ||||||||| | |||||||    
T  54353171 cgttggattacgaaggtctatcagattttatcgtgtatcactaacacctaa 54353221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 55210862 - 55210816
Alignment:
Q  33 tctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||||| |||||||||| ||| |||||||||||||||    
T  55210862 tctatcagattttataatgtatcaccaacacataatttatttacttt 55210816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 11348324 - 11348271
Alignment:
Q  158 gaaaaaagataaacatactgtttagtcactacaccaccatcattgtcatcttca 211  Q
    ||||||| |||||| |||| |||| |||||||||||||||||||||| ||||||    
T  11348324 gaaaaaaaataaacctactatttaatcactacaccaccatcattgtcttcttca 11348271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 53101683 - 53101732
Alignment:
Q  30 atgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||| ||||| |||||||||||||||| ||| |||||||||||||||    
T  53101683 atgtctaccagatcttatagtgtatcaccaacacttaatttatttacttt 53101732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 2232752 - 2232812
Alignment:
Q  19 ttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||| | |||||| ||||||||  |||||||| || |||||||||||||||||||    
T  2232752 ttggattacggaggtctatgagattttacggtgtatcagcaacacctaatttatttacttt 2232812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 28776737 - 28776773
Alignment:
Q  178 tttagtcactacaccaccatcattgtcatcttcatct 214  Q
    |||| ||||||||||||||||||||||||||||||||    
T  28776737 tttaatcactacaccaccatcattgtcatcttcatct 28776773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 47431029 - 47430973
Alignment:
Q  158 gaaaaaagataaacatactgtttagtcactacaccaccatcattgtcatcttcatct 214  Q
    |||||||  ||||| |||| |||  ||||||||||||||||||||||||||||||||    
T  47431029 gaaaaaatttaaacctactatttcatcactacaccaccatcattgtcatcttcatct 47430973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 50881084 - 50881028
Alignment:
Q  19 ttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttattta 75  Q
    |||||||| ||| ||||| || ||||||||||||| ||||| |||||||||||||||    
T  50881084 ttggattatgaaggtctaccatattttatagtgtaccaccaacacctaatttattta 50881028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 43392769 - 43392812
Alignment:
Q  32 gtctatcagattttatagtgtatcaccagcacctaatttattta 75  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||    
T  43392769 gtctatcagattttatagtgtaccaccaacaccaaatttattta 43392812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 2233259 - 2233213
Alignment:
Q  33 tctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||| ||||||||||| ||||||||| ||||||||||| |||||||    
T  2233259 tctataagattttatagcgtatcaccaacacctaatttaattacttt 2233213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 23073344 - 23073282
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||| |||||| | || ||||| ||||||  ||||||||||| |||||||||||||||||||    
T  23073344 cgttgaattacggaggtgtatcaaattttacggtgtatcaccaacacctaatttatttacttt 23073282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 33111815 - 33111753
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||| |||||| | |||||| | ||||||||||||||| ||  |||||||||||||||||||    
T  33111815 cgttgtattacggaggtctataaaattttatagtgtatctcccacacctaatttatttacttt 33111753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 37609469 - 37609531
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||| | | |||||| |||||| ||||||| ||| || |||||||||||||||||||    
T  37609469 cgttggattagggaggtctataagatttaatagtgtctcatcaacacctaatttatttacttt 37609531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 53764898 - 53764959
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||| |||||| | |||||||||||||||| ||||||||||| ||| |||||| ||||||||    
T  53764898 cgttgaattacggaggtctatcagattttatggtgtatcaccaacacttaattt-tttacttt 53764959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 54354346 - 54354308
Alignment:
Q  32 gtctatcagattttatagtgtatcaccagcacctaattt 70  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  54354346 gtctatcagattttacagtgtatcaccaacacctaattt 54354308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 10979143 - 10979083
Alignment:
Q  19 ttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||| | || ||||| ||||||  ||||||||||| || ||||||||||||||||    
T  10979143 ttggattacggaggtttatcaaattttacggtgtatcaccaacatctaatttatttacttt 10979083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 44748532 - 44748471
Alignment:
Q  18 gttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  44748532 gttggattacgaaggtctatcagattttatagtgtatcaccaacacctaatttatttacttt 44748471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 18788530 - 18788468
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||    
T  18788530 cgttggattacgaaggtctatcagattttataatgtatcaccaacacctaatttatttacttt 18788468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 45399980 - 45399918
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||    
T  45399980 cgttggattacgaaggtctatcagattttatagtgtatcactaacacctaatttatttacttt 45399918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 7011782 - 7011844
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | |||||| ||||||||||||||||||||| |||||||||||||||||||    
T  7011782 cgttggattacggaggtctataagattttatagtgtatcaccaacacctaatttatttacttt 7011844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 7027140 - 7027202
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | |||||| ||||||||||||||||||||| |||||||||||||||||||    
T  7027140 cgttggattacggaggtctataagattttatagtgtatcaccaacacctaatttatttacttt 7027202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 9391667 - 9391729
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||| ||||||||||||||||||||||||| || |||| ||||||||||||||    
T  9391667 cgttggattacgaaggtctatcagattttatagtgtatcatcaacaccaaatttatttacttt 9391729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 9392785 - 9392723
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||  | ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9392785 cgttggattacagaggtctatcagattttatagtgtatcaccggcacctaatttatttacttt 9392723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 19217775 - 19217837
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | ||||||| |||||||||||||||||||| |||||||||||||||||||    
T  19217775 cgttggattacggaggtctatcggattttatagtgtatcaccaacacctaatttatttacttt 19217837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 37237198 - 37237136
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | ||||||||||||||||||||||| |||| |||||||||||||||||||    
T  37237198 cgttggattacggaggtctatcagattttatagtgtatgaccaacacctaatttatttacttt 37237136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 43113822 - 43113884
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43113822 cgttggattacagaggtctatcagattttatagtgtatcaccagcacctaatttatttgcttt 43113884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 43961081 - 43961143
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||| || |||||||||||||||||||||||||| | |||||||||||||||||||    
T  43961081 cgttggattacaaaggtctatcagattttatagtgtatcactaacacctaatttatttacttt 43961143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 44417606 - 44417667
Alignment:
Q  18 gttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||| | ||||||||||||||||||| |||||||| |||||||||||||||||||    
T  44417606 gttggattacggaggtctatcagattttatagtctatcaccaacacctaatttatttacttt 44417667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 32518560 - 32518616
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatt 73  Q
    |||||||||||| | |||||||||||||||||||||||||||| |||||||||||||    
T  32518560 cgttggattacggaggtctatcagattttatagtgtatcaccaacacctaatttatt 32518616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 13597291 - 13597353
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||| | | |||||| ||||||||||||||||||||| |||||||||||||||||||    
T  13597291 cgttggattagggaggtctataagattttatagtgtatcaccaacacctaatttatttacttt 13597353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 29186816 - 29186870
Alignment:
Q  21 ggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttattta 75  Q
    |||||||| | |||||||||||||||||||||||||||| |||||||||||||||    
T  29186816 ggattacggaggtctatcagattttatagtgtatcaccaacacctaatttattta 29186870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 43962539 - 43962477
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||| ||||||||||||||||||| |||||| | |||||||||||||| ||||    
T  43962539 cgttggattacgaaggtctatcagattttatagtatatcactaacacctaatttatttccttt 43962477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 44420492 - 44420431
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||| ||||||||||||| |||||||||||||| || ||||||||||||||||    
T  44420492 cgttggattacgaaggtctatcagattt-atagtgtatcaccaacatctaatttatttacttt 44420431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 13599226 - 13599165
Alignment:
Q  18 gttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||| | |||||||||||||||||||||||||  | |||||||||||||||||||    
T  13599226 gttggattacggaggtctatcagattttatagtgtatcagtaacacctaatttatttacttt 13599165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 29187985 - 29187938
Alignment:
Q  32 gtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||    
T  29187985 gtctatcagattttatagtgcatcaccaacacctaatttatttacttt 29187938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 13750606 - 13750544
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||| |||||| |||||||||||||||||| || || ||||||||| ||||||    
T  13750606 cgttggattacgaaggtctattagattttatagtgtatcatcatcaactaatttatatacttt 13750544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 18787296 - 18787358
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | || ||||||||||||| ||||||||||| ||| |||||||||||||||    
T  18787296 cgttggattacggaggtttatcagattttatggtgtatcaccaacacttaatttatttacttt 18787358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 26005499 - 26005561
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||| || |||||| ||||||||||||||||||||| ||| |||||||| ||||||    
T  26005499 cgttggattacaaaggtctataagattttatagtgtatcaccaacacgtaatttatgtacttt 26005561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 27072624 - 27072562
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||  | |||||| |||||||||||| |||||||| |||||||||||||||||||    
T  27072624 cgttggattacagaggtctataagattttatagtttatcaccaacacctaatttatttacttt 27072562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 27205689 - 27205751
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||  | |||||| |||||||||||| |||||||| |||||||||||||||||||    
T  27205689 cgttggattacagaggtctataagattttatagtctatcaccaacacctaatttatttacttt 27205751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 48793486 - 48793424
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||| || || ||| ||||||||||||||||||||| |||| ||||||||||||||    
T  48793486 cgttggattacaaaggtgtataagattttatagtgtatcaccaacaccaaatttatttacttt 48793424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 44231816 - 44231769
Alignment:
Q  32 gtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||| |||||||||||||||||||||| ||||| |||||||||||||    
T  44231816 gtctaccagattttatagtgtatcaccaacacctgatttatttacttt 44231769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 3537574 - 3537635
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||| |||||| | |||||||||| |||||||| |||||||||| ||||||||    
T  3537574 cgttggattacgaaggtctataaaattttatagtatatcaccatcacctaattt-tttacttt 3537635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 43115057 - 43114995
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||  | |||||||||||||||||||| |||| ||  ||||||||||||||||||    
T  43115057 cgttggattactgaagtctatcagattttatagtgcatcatcataacctaatttatttacttt 43114995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 48792591 - 48792653
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||| |  || ||| ||||||||||||||||||||| |||| ||||||||||||||    
T  48792591 cgttggattacaagggtgtataagattttatagtgtatcaccaacaccaaatttatttacttt 48792653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 9357745 - 9357704
Alignment:
Q  38 cagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||| |||||||||||||||| |||||||||||||||||||    
T  9357745 cagatcttatagtgtatcaccaacacctaatttatttacttt 9357704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 44746874 - 44746931
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttattt 74  Q
    |||||||||||| | |||||||| |||||||||||||| | || ||||||||||||||    
T  44746874 cgttggattacggaggtctatcatattttatagtgtattatcaacacctaatttattt 44746931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 43114940 - 43114872
Alignment:
Q  146 ataaaacccaaggaaaaaagataaacatactgtttagtcactacaccaccatcattgtcatcttcatct 214  Q
    |||||||||| | ||||||  ||||| |||| |||| ||||||||||||||||||| ||||||| ||||    
T  43114940 ataaaacccaggaaaaaaaattaaacctactatttaatcactacaccaccatcattatcatctttatct 43114872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 9392637 - 9392590
Alignment:
Q  167 taaacatactgtttagtcactacaccaccatcattgtcatcttcatct 214  Q
    ||||| |||| |||| ||||||||||| ||||||||||||||||||||    
T  9392637 taaacctactatttaatcactacaccatcatcattgtcatcttcatct 9392590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 37235951 - 37235994
Alignment:
Q  36 atcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||| | |||||||||| |||||||||||||||||||    
T  37235951 atcagattttacaatgtatcaccaacacctaatttatttacttt 37235994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 3538543 - 3538481
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| |  ||||||| ||||||  ||||||||||| || ||||||||||||||||    
T  3538543 cgttggattacggagatctatcaaattttacggtgtatcaccaacatctaatttatttacttt 3538481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 37236080 - 37236121
Alignment:
Q  173 tactgtttagtcactacaccaccatcattgtcatcttcatct 214  Q
    |||| |||| |||||||| |||||||||||||||||||||||    
T  37236080 tactatttaatcactacatcaccatcattgtcatcttcatct 37236121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 45398689 - 45398733
Alignment:
Q  35 tatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||| || |||||||||||||||| || ||||||||||||||||    
T  45398689 tatcaaatcttatagtgtatcaccaacatctaatttatttacttt 45398733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 2996 - 2933
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttactttt 80  Q
    |||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2996 cgttagattacgaaggtctatcagattttatagtgtatcaccaacacctaatttatttactttt 2933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 1916 - 1978
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||| |||||||||||||||| |||||||  |||||||||||| |||||||||||||||||||    
T  1916 cgttagattacgaatgtctattagattttccagtgtatcaccaacacctaatttatttacttt 1978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 27892306 - 27892243
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttactttt 80  Q
    |||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27892306 cgttagattacgaaggtctatcagattttatagtgtatcaccaacacctaatttatttactttt 27892243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 16602873 - 16602935
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  16602873 cgttggattacggatgtctatcagattttacagtgtatcaccaacacctaatttatttacttt 16602935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 27891254 - 27891316
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||| ||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||    
T  27891254 cgttagattacgaatgtctatcagattttccagtgtatcaccaacacctaatttatttacttt 27891316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 5033623 - 5033669
Alignment:
Q  33 tctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||| |||||||||||||||||||||| ||  |||||||||||||||    
T  5033623 tctaccagattttatagtgtatcaccaacatttaatttatttacttt 5033669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 38243924 - 38243863
Alignment:
Q  18 gttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||| || || ||| |||||||| ||||||| |||| |||| ||||||||||||||    
T  38243924 gttggattacaaaggtgtataagattttacagtgtattaccaacaccaaatttatttacttt 38243863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 38243050 - 38243090
Alignment:
Q  39 agattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||| |||||||||| |||| ||||||||||||||    
T  38243050 agattttataatgtatcaccaacaccaaatttatttacttt 38243090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 35927086 - 35927024
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||    
T  35927086 cgttggattacgaaggtctaccagattttatagtgtatcaccaacacctaatttatttacttt 35927024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 7261511 - 7261451
Alignment:
Q  19 ttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||    
T  7261511 ttggattacgaaggtctataagattttatagtgtatcaccaacacctaatttatttacttt 7261451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 8815327 - 8815265
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | |||||||||||||||||||||||||||| |||| ||||||||||||||    
T  8815327 cgttggattacggaggtctatcagattttatagtgtatcaccaacaccaaatttatttacttt 8815265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 36074764 - 36074706
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttattta 75  Q
    |||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||    
T  36074764 cgttggattacgaaggtctatcatattttatagtgtatcaccaacacctaatttattta 36074706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 38032390 - 38032328
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | ||||||||||||||||||||||||| || |||||||||||||||||||    
T  38032390 cgttggattacggaggtctatcagattttatagtgtatcatcaacacctaatttatttacttt 38032328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 56234985 - 56234929
Alignment:
Q  23 attacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||    
T  56234985 attacgaaggtctatcagattttataatgtatcaccaacacctaatttatttacttt 56234929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 18091743 - 18091790
Alignment:
Q  32 gtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  18091743 gtctatcagattttatagtgtatcaccaacacctaatttatttacttt 18091790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 17356509 - 17356571
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | |||||||||||||||||||||||||||| |||||| || |||||||||    
T  17356509 cgttggattacggaggtctatcagattttatagtgtatcaccaacacctagttcatttacttt 17356571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 22622015 - 22622077
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | |||||||||||||||||||||||||||  |||| ||||||||||||||    
T  22622015 cgttggattacggaggtctatcagattttatagtgtatcaccgacaccgaatttatttacttt 22622077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 23757940 - 23757878
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||| |||||| | |||||||||||||||| ||||||||||| |||||||||||||||||||    
T  23757940 cgttgaattacggaggtctatcagattttatggtgtatcaccaacacctaatttatttacttt 23757878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 34095629 - 34095567
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||| |||||| | |||||||||||||||||||||||||||  |||||||||||||||||||    
T  34095629 cgttgaattacggaggtctatcagattttatagtgtatcacccacacctaatttatttacttt 34095567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 38031316 - 38031378
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||| |||||| | ||||||||||||||||||||||||| || |||||||||||||||||||    
T  38031316 cgttgaattacggaggtctatcagattttatagtgtatcatcaacacctaatttatttacttt 38031378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 8814283 - 8814340
Alignment:
Q  18 gttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttattta 75  Q
    ||||||||||| | |||||||||||||||||||||| ||||| |||||||||||||||    
T  8814283 gttggattacggaggtctatcagattttatagtgtaacaccaacacctaatttattta 8814340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 22623113 - 22623053
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttact 77  Q
    |||||||||||| | ||||||||||||||||| |||||||||| || ||||||||||||||    
T  22623113 cgttggattacggaggtctatcagattttataatgtatcaccaacatctaatttatttact 22623053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 10803037 - 10803099
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | || |||||||||||||| |||||||||| |||| ||||||||||||||    
T  10803037 cgttggattacggaggtttatcagattttatattgtatcaccaacaccgaatttatttacttt 10803099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 10804165 - 10804103
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | ||||||||||||||| ||||||||| || | |||||||||||||||||    
T  10804165 cgttggattacggaggtctatcagattttacagtgtatcatcaacgcctaatttatttacttt 10804103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 35925840 - 35925901
Alignment:
Q  18 gttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||| |  |||||||||||||||||||||||  || |||||||||||||||||||    
T  35925840 gttggattacggagatctatcagattttatagtgtatcgtcaacacctaatttatttacttt 35925901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 10803154 - 10803222
Alignment:
Q  146 ataaaacccaaggaaaaaagataaacatactgtttagtcactacaccaccatcattgtcatcttcatct 214  Q
    |||||||||| | ||||||  ||| | ||||||||| |||||||| |||||||||||||||||||||||    
T  10803154 ataaaacccaggaaaaaaaattaatcctactgtttaatcactacatcaccatcattgtcatcttcatct 10803222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 48501294 - 48501232
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||| ||||||| | |||| ||||||||||| |||||||| || |||||||||||||||||||    
T  48501294 cgttagattacggaggtctgtcagattttattgtgtatcatcaacacctaatttatttacttt 48501232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 5433376 - 5433319
Alignment:
Q  18 gttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttattta 75  Q
    |||| |||||| | ||||||||||||||||| |||||||| | |||||||||||||||    
T  5433376 gttgtattacggaggtctatcagattttataatgtatcacaaacacctaatttattta 5433319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 18091845 - 18091914
Alignment:
Q  146 ataaaacccaaggaaaaaagat-aaacatactgtttagtcactacaccaccatcattgtcatcttcatct 214  Q
    |||||||||| ||||||||  | |||| |||| |||| |||||||||||||||||||| |||||||||||    
T  18091845 ataaaacccagggaaaaaattttaaacctactatttaatcactacaccaccatcattgacatcttcatct 18091914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 48081536 - 48081475
Alignment:
Q  18 gttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||| || | |||| ||||| |||||| |||||||||| |||||||||||||||||||    
T  48081536 gttggattgcggaggtctttcagagtttataatgtatcaccaacacctaatttatttacttt 48081475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 56233878 - 56233918
Alignment:
Q  39 agattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  56233878 agattttatagtgtatcgccaacacctaatttatttacttt 56233918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 34122775 - 34122729
Alignment:
Q  33 tctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||| |||||||||||||||| ||| | |||||||||||||    
T  34122775 tctatcagatcttatagtgtatcaccaacacttgatttatttacttt 34122729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 38032245 - 38032211
Alignment:
Q  178 tttagtcactacaccaccatcattgtcatcttcat 212  Q
    |||| ||||||||||||||||||||||||||||||    
T  38032245 tttaatcactacaccaccatcattgtcatcttcat 38032211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 48081334 - 48081288
Alignment:
Q  33 tctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||| ||| |||||| |||||||||| |||||||||||||||||||    
T  48081334 tctatgagagtttatactgtatcaccaacacctaatttatttacttt 48081288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 35191964 - 35192019
Alignment:
Q  16 acgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttattt 74  Q
    ||||||||||||| | |||||||| ||||||||||||   |||| ||||||||||||||    
T  35191964 acgttggattacggaagtctatcaaattttatagtgt---accaccacctaatttattt 35192019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 43894490 - 43894538
Alignment:
Q  166 ataaacatactgtttagtcactacaccaccatcattgtcatcttcatct 214  Q
    ||||||||| | |||| ||||||||| | ||||||||||||||||||||    
T  43894490 ataaacatattctttaatcactacacaatcatcattgtcatcttcatct 43894538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 38235120 - 38235058
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||    
T  38235120 cgttggattacgaatgtctataagattttacagtgtatcaccaacacctaatttatttacttt 38235058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 7111445 - 7111383
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | ||||||||||||||||||||||||| || |||||||||||||||||||    
T  7111445 cgttggattacggaggtctatcagattttatagtgtatcatcaacacctaatttatttacttt 7111383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 21203159 - 21203221
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||| || ||||||||||||||||||||||||| || |||||||||||||||||||    
T  21203159 cgttggattacaaaggtctatcagattttatagtgtatcatcaacacctaatttatttacttt 21203221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 51693295 - 51693357
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | ||||||| |||||||||||||||||||| |||||||||||||||||||    
T  51693295 cgttggattacggaggtctatcggattttatagtgtatcaccaacacctaatttatttacttt 51693357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 52761566 - 52761504
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||| || | |||||||||||||||||||||||||||| |||||||||||||||||||    
T  52761566 cgttggattgcggaggtctatcagattttatagtgtatcaccaacacctaatttatttacttt 52761504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 51468490 - 51468550
Alignment:
Q  20 tggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttactttt 80  Q
    ||||||||| | |||||||||||||||||||||||||||| |||| |||||||||||||||    
T  51468490 tggattacggaggtctatcagattttatagtgtatcaccaacacccaatttatttactttt 51468550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 1823266 - 1823215
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaat 68  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  1823266 cgttggattacgaaggtctatcagattttatagtgtatcaccaacacctaat 1823215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 52759526 - 52759573
Alignment:
Q  32 gtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  52759526 gtctatcagattttatagtgtatcaccaacacctaatttatttacttt 52759573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 47533808 - 47533762
Alignment:
Q  33 tctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  47533808 tctatcagattttatagtgtatcaccaacacctaatttatttacttt 47533762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 52086773 - 52086835
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||| |||||| | ||||||||||||||||||| |||||||||| ||||||||    
T  52086773 cgttggattacgaaggtctataaaattttatagtgtatcaccatcacctaatttttttacttt 52086835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 5488837 - 5488780
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttattt 74  Q
    |||||||||||| | |||||||| ||||||||||||||||||| ||||||||||||||    
T  5488837 cgttggattacggaggtctatcaaattttatagtgtatcaccaacacctaatttattt 5488780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 7110374 - 7110436
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||| || | ||||||||||||||||||||||||| || | |||||||||||||||||    
T  7110374 cgttggattgcggaggtctatcagattttatagtgtatcatcaacgcctaatttatttacttt 7110436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 17244323 - 17244385
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | ||||||||||||||||| |||||||||   ||||||||||||||||||    
T  17244323 cgttggattacggaggtctatcagattttataatgtatcaccgatacctaatttatttacttt 17244385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 5488649 - 5488702
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaattt 70  Q
    |||||||||||| | |||||||||||||||||||||||||||| ||| ||||||    
T  5488649 cgttggattacggaggtctatcagattttatagtgtatcaccaacacgtaattt 5488702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 45229572 - 45229515
Alignment:
Q  18 gttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttattta 75  Q
    ||||||||||| | ||||||||||||||||| || ||||||| |||||||||||||||    
T  45229572 gttggattacggaggtctatcagattttataatggatcaccaacacctaatttattta 45229515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 51468869 - 51468809
Alignment:
Q  19 ttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||| |  ||||| |||||||| |||||||||||| |||||||||||||||||||    
T  51468869 ttggattacggagatctattagattttacagtgtatcaccaacacctaatttatttacttt 51468809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 18819410 - 18819460
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaa 67  Q
    |||||||||||| | || ||||||||||||||||||||||||| |||||||    
T  18819410 cgttggattacggaggtatatcagattttatagtgtatcaccaacacctaa 18819460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 40187750 - 40187800
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaa 67  Q
    |||||||||||| | |||||||||||||||| ||||||||||| |||||||    
T  40187750 cgttggattacggaggtctatcagattttatcgtgtatcaccaacacctaa 40187800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 1822057 - 1822114
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttattt 74  Q
    |||||| ||||||| ||||||| |||||||||||||||||  | ||||||||||||||    
T  1822057 cgttgggttacgaaggtctatctgattttatagtgtatcattaacacctaatttattt 1822114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 50483660 - 50483720
Alignment:
Q  18 gttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||| | ||||| |||||||||| |||||| |||| |||||||||||||||||||    
T  50483660 gttggattacggaagtcta-cagattttatcgtgtataaccaacacctaatttatttacttt 50483720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 52759628 - 52759697
Alignment:
Q  146 ataaaacccaaggaaaaaagat-aaacatactgtttagtcactacaccaccatcattgtcatcttcatct 214  Q
    |||||||||| ||||||||  | |||| |||| |||| |||||||||||||||||||| |||||||||||    
T  52759628 ataaaacccagggaaaaaattttaaacctactatttaatcactacaccaccatcattgacatcttcatct 52759697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 7111304 - 7111268
Alignment:
Q  178 tttagtcactacaccaccatcattgtcatcttcatct 214  Q
    |||| ||||||||||||||||||||||||||||||||    
T  7111304 tttaatcactacaccaccatcattgtcatcttcatct 7111268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 50484964 - 50484913
Alignment:
Q  19 ttggattacgaatgtctatcagattttatagtgtatcaccagcacctaattt 70  Q
    |||||||||  | ||||||||||||||| |||||||||||| ||||||||||    
T  50484964 ttggattacataggtctatcagattttacagtgtatcaccaacacctaattt 50484913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 45228423 - 45228485
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| |  ||||||| ||||||||||||||||| | | | |||||||||||||||    
T  45228423 cgttggattacggagatctatcaaattttatagtgtatcacaaacgcttaatttatttacttt 45228485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 17244471 - 17244512
Alignment:
Q  173 tactgtttagtcactacaccaccatcattgtcatcttcatct 214  Q
    |||| |||| |||||||| |||||||||||||||||||||||    
T  17244471 tactatttaatcactacatcaccatcattgtcatcttcatct 17244512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 51468724 - 51468688
Alignment:
Q  178 tttagtcactacaccaccatcattgtcatcttcatct 214  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  51468724 tttaatcactacaccatcatcattgtcatcttcatct 51468688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 9305 - 9363
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttattta 75  Q
    |||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||    
T  9305 cgttggattacggaggtctatcagattttatagtgtatcaccaacacctaatttattta 9363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 30640945 - 30641007
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  30640945 cgttggattacggaggtctatcaaattttatagtgtatcaccaacacctaatttatttacttt 30641007  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 41636979 - 41637041
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||| | |||||||||||||||| ||||||||||| |||||||||||||||||||    
T  41636979 cgttggattacggaagtctatcagattttatcgtgtatcaccaacacctaatttatttacttt 41637041  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 9245386 - 9245339
Alignment:
Q  32 gtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  9245386 gtctatcagattttatagtgtatcaccaacacctaatttatttacttt 9245339  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 9244217 - 9244271
Alignment:
Q  21 ggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttattta 75  Q
    |||||||| | |||||||||||||||||||||||||||| |||||||||||||||    
T  9244217 ggattacggaggtctatcagattttatagtgtatcaccaacacctaatttattta 9244271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 522066 - 522005
Alignment:
Q  18 gttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||| | |||||||| ||||||||||||||||||| | |||||||||||||||||    
T  522066 gttggattacggaggtctatcaaattttatagtgtatcaccaacccctaatttatttacttt 522005  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 20309086 - 20309133
Alignment:
Q  32 gtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||    
T  20309086 gtctatcagattttatagtgtatcaccaatacctaatttatttacttt 20309133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 21095719 - 21095766
Alignment:
Q  32 gtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||    
T  21095719 gtctatcagattttatagtgtatcaccaatacctaatttatttacttt 21095766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 34642812 - 34642875
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttactttt 80  Q
    ||||||||| || | ||||||||||||||||||| |||||||| || |||||||||||||||||    
T  34642812 cgttggattgcggaggtctatcagattttatagtatatcaccaacatctaatttatttactttt 34642875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 20310021 - 20309959
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||| ||| |||| ||||||||||||||||||||||  ||||||| |||||||||||    
T  20310021 cgttggattatgaaggtctgtcagattttatagtgtatcacctacacctaacttatttacttt 20309959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 21096654 - 21096592
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||| ||| |||| ||||||||||||||||||||||  ||||||| |||||||||||    
T  21096654 cgttggattatgaaggtctgtcagattttatagtgtatcacctacacctaacttatttacttt 21096592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 26364889 - 26364947
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttattta 75  Q
    |||||||||||  | ||||||||||||||||| |||||||||| |||||||||||||||    
T  26364889 cgttggattacagaggtctatcagattttataatgtatcaccaacacctaatttattta 26364947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 26366164 - 26366102
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||| ||||||| | |||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  26366164 cgttagattacggaggtctattagattttatagtgtatcaccaacacataatttatttacttt 26366102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 22012300 - 22012347
Alignment:
Q  32 gtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||| |||||||||||||||||||||| ||||| |||||||||||||    
T  22012300 gtctaccagattttatagtgtatcaccaacacctgatttatttacttt 22012347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 22013214 - 22013167
Alignment:
Q  32 gtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||| |||||||||||||||||||||| ||||| |||||||||||||    
T  22013214 gtctaccagattttatagtgtatcaccaacacctgatttatttacttt 22013167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 30644675 - 30644612
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttactttt 80  Q
    |||||||||||| | |||||||| |||||||| || ||||||| ||||||||||||||| ||||    
T  30644675 cgttggattacggaggtctatcaaattttataatggatcaccaacacctaatttatttagtttt 30644612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 43584556 - 43584618
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||| || ||||||||||||||||| ||||||||||    ||||||||||||||||    
T  43584556 cgttggattacaaaagtctatcagattttataatgtatcaccaatgtctaatttatttacttt 43584618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 31203078 - 31203125
Alignment:
Q  32 gtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||| |||||||| |||||||||| ||||||| |||||||||||    
T  31203078 gtctatcaaattttataatgtatcaccaacacctaacttatttacttt 31203125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 43134023 - 43133976
Alignment:
Q  32 gtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||| |||||||||||||||||||||| ||| | |||||||||||||    
T  43134023 gtctaccagattttatagtgtatcaccaacacttgatttatttacttt 43133976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 3714493 - 3714447
Alignment:
Q  33 tctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||| |||||||||||||||| ||| | |||||||||||||    
T  3714493 tctatcagatcttatagtgtatcaccaacacttgatttatttacttt 3714447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 34643920 - 34643878
Alignment:
Q  32 gtctatcagattttatagtgtatcaccagcacctaatttattt 74  Q
    |||||||||||||||| | ||||||||| ||||||||||||||    
T  34643920 gtctatcagattttatggcgtatcaccaacacctaatttattt 34643878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 43585913 - 43585857
Alignment:
Q  19 ttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttattta 75  Q
    |||||||| ||| ||||| || |||||||||||||||| ||  ||||||||||||||    
T  43585913 ttggattatgaaggtctaccatattttatagtgtatcatcaatacctaatttattta 43585857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 31181 - 31234
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaattt 70  Q
    |||||||||||| | |||||||||||||||||||||||||||| ||||||||||    
T  31181 cgttggattacggaggtctatcagattttatagtgtatcaccaacacctaattt 31234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 35255 - 35202
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaattt 70  Q
    |||||||||||| | ||||||||||||||| |||||||||||| ||||||||||    
T  35255 cgttggattacggaggtctatcagattttacagtgtatcaccaacacctaattt 35202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 83631 - 83578
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaattt 70  Q
    |||||||||||| | |||||||||||||||||||||||||||| ||||||||||    
T  83631 cgttggattacggaggtctatcagattttatagtgtatcaccaacacctaattt 83578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 79557 - 79610
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaattt 70  Q
    |||||||||||| | ||||||||||||||| |||||||||||| ||||||||||    
T  79557 cgttggattacggaggtctatcagattttacagtgtatcaccaacacctaattt 79610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 104405 - 104461
Alignment:
Q  23 attacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||| | |||||||||||||||||||||||||||| || ||||||||||||||||    
T  104405 attacggaggtctatcagattttatagtgtatcaccaacatctaatttatttacttt 104461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 25313 - 25252
Alignment:
Q  18 gttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    ||||||||||| | || ||||| |||||||||||||| | || |||||||||||||||||||    
T  25313 gttggattacggaggtttatcacattttatagtgtattatcaacacctaatttatttacttt 25252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 12935 - 12887
Alignment:
Q  166 ataaacatactgtttagtcactacaccaccatcattgtcatcttcatct 214  Q
    ||||||||| | |||| ||||||||| ||||||||||||||||||||||    
T  12935 ataaacatattctttaatcactacacaaccatcattgtcatcttcatct 12887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1425
Description:

Target: scaffold1425; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 282 - 343
Alignment:
Q  17 cgttggattacgaatgtctatcagattttatagtgtatcaccagcacctaatttatttacttt 79  Q
    |||||||||||  | ||||||||||||||| || ||||||||| |||||||||| ||||||||    
T  282 cgttggattacagaggtctatcagattttacagcgtatcaccaacacctaattt-tttacttt 343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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