View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9947_low_2 (Length: 250)
Name: NF9947_low_2
Description: NF9947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9947_low_2 |
 | |
|
| [»] chr6 (30 HSPs) |
| |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] scaffold0477 (2 HSPs) |
| | |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0288 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 30)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 3 - 250
Target Start/End: Complemental strand, 4490428 - 4490181
Alignment:
| Q |
3 |
cgagtttcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctc |
102 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4490428 |
cgagtctcgtgtcctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctcccaccatcaattcattgatcagtttctc |
4490329 |
T |
|
| Q |
103 |
tacctcttctctctttacattggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
4490328 |
tacctcttctctctttacattggtatcaattttcatcccaatctcccattcttcgcaaataattctactgctaagtggttgatcagcaaaaaatggccaa |
4490229 |
T |
|
| Q |
203 |
cacaacattggcactccagcacatatactctccatgattgagttccat |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4490228 |
cacaacattggcactccagcacatatactctccatgattgagttccat |
4490181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 3171813 - 3172047
Alignment:
| Q |
16 |
ctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctcttctctc |
115 |
Q |
| |
|
|||| |||||||||||||||||||| | ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |
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|
| T |
3171813 |
ctcctctgccttcttcttcaactccatggccctttgcctcatcttctttcctttctctcccaccatcaattcgttgatcagtttctctacctcccctctc |
3171912 |
T |
|
| Q |
116 |
tttacattggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacattggca |
215 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| || ||||||| |||||||||||||| | |||||||||||||| |
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|
| T |
3171913 |
tttacattggtatcaatttccatcccaatcttccattcttggcaaataattctactgttaggtggttgatcagcaaaaaatggcctacacaacattggca |
3172012 |
T |
|
| Q |
216 |
ctccagcacatatactctccatgattgagttccat |
250 |
Q |
| |
|
||||||||||| ||| ||| || ||||||||||| |
|
|
| T |
3172013 |
ttccagcacatacactttccgtggttgagttccat |
3172047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 4504462 - 4504223
Alignment:
| Q |
11 |
gtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctctt |
110 |
Q |
| |
|
|||| |||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| |
|
|
| T |
4504462 |
gtgtcctcctctgccttcttcttcaactccatggccttttgcctcatcttctttcctttctctcccaccatcaattcattaataagtttctctacctctt |
4504363 |
T |
|
| Q |
111 |
ctctctttacattggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacat |
210 |
Q |
| |
|
|||||| |||||||| |||||| ||||||||||||||||||||||| |||||||| | || ||||||| || |||| ||||||||| ||||||||||| |
|
|
| T |
4504362 |
ctctctgtacattggcatcaatcttcatcccaatctcccattcttcgcaaataatgttgctattaagtggctgatcagaaaaaaatggccaacacaacat |
4504263 |
T |
|
| Q |
211 |
tggcactccagcacatatactctccatgattgagttccat |
250 |
Q |
| |
|
||||||||||||||| | ||| || || ||||||||||| |
|
|
| T |
4504262 |
tggcactccagcacaaacactttcagtggttgagttccat |
4504223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 4592296 - 4592537
Alignment:
| Q |
9 |
tcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctc |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | ||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
4592296 |
tcgtgttctcctctgccttcttcttcaactcgattgcctttttcctcatcttctttcctttctctcccaccatcaattcattgataagtttctccacctc |
4592395 |
T |
|
| Q |
109 |
ttctctctttacattggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaac |
208 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||| | |||||| ||||| | | ||| || ||| ||| ||||| ||||||||| |
|
|
| T |
4592396 |
ctctctctttacattcgtatcaatttccatcccaatctcccattcattgtaaataagtctacagtttgttggctgatcactaaagaatggccaacacaac |
4592495 |
T |
|
| Q |
209 |
attggcactccagcacatatactctccatgattgagttccat |
250 |
Q |
| |
|
||||| | ||||||||||||||| || || ||||||||||| |
|
|
| T |
4592496 |
attggaattccagcacatatactttcagtggttgagttccat |
4592537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 4585701 - 4585942
Alignment:
| Q |
9 |
tcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctc |
108 |
Q |
| |
|
|||||| |||| | ||||||||||||||||| | ||||||||||||||||||||||| |||||||| |||||||||||||||| || ||||| ||||| |
|
|
| T |
4585701 |
tcgtgtcctcctccgccttcttcttcaactcgattgccttttgcctcatcttctttccattctctcccaccatcaattcattgaccaacttctccacctc |
4585800 |
T |
|
| Q |
109 |
ttctctctttacattggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaac |
208 |
Q |
| |
|
|||||||| |||||||| |||| || |||||||||||||||||| | ||||||||||||| | | ||| || ||||||| ||||| ||||||||| |
|
|
| T |
4585801 |
ctctctcttcacattggtgtcaacttccatcccaatctcccattcattgcaaataattctacagtttgttggctgatcagcaatgaatggccaacacaac |
4585900 |
T |
|
| Q |
209 |
attggcactccagcacatatactctccatgattgagttccat |
250 |
Q |
| |
|
|||||||||||||||||||| || || || ||||||||||| |
|
|
| T |
4585901 |
attggcactccagcacatatgctttcagtggttgagttccat |
4585942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 4613785 - 4613544
Alignment:
| Q |
9 |
tcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctc |
108 |
Q |
| |
|
|||||| |||| ||||||||||||||||||| | |||||||||||||| ||||||||||||||||| |||||||||||||||| ||| ||||||||||| |
|
|
| T |
4613785 |
tcgtgtcctcctctgccttcttcttcaactcaattgccttttgcctcattttctttcctttctctcccaccatcaattcattgaccagcttctctacctc |
4613686 |
T |
|
| Q |
109 |
ttctctctttacattggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaac |
208 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||||||| |||||||| | || ||| ||| | | | ||| || || || |||||||| ||||||||| |
|
|
| T |
4613685 |
atctctcttcacattggtgtcaatttccatcccaatttcccattcattgcatatatatctgcagtttgctggctgatccgcgaaaaatggccaacacaac |
4613586 |
T |
|
| Q |
209 |
attggcactccagcacatatactctccatgattgagttccat |
250 |
Q |
| |
|
|||||||||||||||||||| || || || ||||||||||| |
|
|
| T |
4613585 |
attggcactccagcacatatgctttcagtggttgagttccat |
4613544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 4480760 - 4480999
Alignment:
| Q |
11 |
gtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctctt |
110 |
Q |
| |
|
|||| |||| ||||| |||||||||||||| | ||||||||| |||||||||||||||||||||| |||| |||||||||||| | |||| || |||| |
|
|
| T |
4480760 |
gtgtcctcctctgccatcttcttcaactccatggccttttgcttcatcttctttcctttctctcccaccaacaattcattgattaacctctccacatctt |
4480859 |
T |
|
| Q |
111 |
ctctctttacattggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacat |
210 |
Q |
| |
|
||||||| ||||||||||| |||| | |||||||||||||| | ||||||||||||| | || |||| || || ||||| ||||| ||||||||||| |
|
|
| T |
4480860 |
ctctcttcacattggtatcgatttcgagtccaatctcccattcattgcaaataattctacggttaggtggctgatcggcaaagaatggccaacacaacat |
4480959 |
T |
|
| Q |
211 |
tggcactccagcacatatactctccatgattgagttccat |
250 |
Q |
| |
|
||||||||||||||||| ||| || || ||||||||||| |
|
|
| T |
4480960 |
tggcactccagcacatacactttcagtggttgagttccat |
4480999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 26 - 250
Target Start/End: Original strand, 4563793 - 4564017
Alignment:
| Q |
26 |
ttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctcttctctctttacattgg |
125 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| | |
|
|
| T |
4563793 |
ttcttcttcaactcaattgccttttgccgcatcttctttcctttctctcctgacatcaattcattgacaagtttctccacctcttctctctttacattcg |
4563892 |
T |
|
| Q |
126 |
tatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacattggcactccagcaca |
225 |
Q |
| |
|
|||| |||| |||||||||||||||||| | |||||| ||||| | | ||| || ||| |||| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
4563893 |
tatcgatttccatcccaatctcccattcattgtaaataagtctacagtttgttggctgatcaccaaagaatggccaacacaacattggaactccagcaca |
4563992 |
T |
|
| Q |
226 |
tatactctccatgattgagttccat |
250 |
Q |
| |
|
||| || || || ||||||||||| |
|
|
| T |
4563993 |
tatgctttcagtggttgagttccat |
4564017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 4617089 - 4617309
Alignment:
| Q |
11 |
gtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctctt |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||| | ||||||||| |||| ||||||||||| |||||| | |||| |||||||||||| || | | ||| | |
|
|
| T |
4617089 |
gtgttctcctctgccttcttcttcaactccatggccttttgcttcattttctttcctttatctccggctatcacttcattgatcagctttgccaactcct |
4617188 |
T |
|
| Q |
111 |
ctctctttacattggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacat |
210 |
Q |
| |
|
||||||| ||||| ||||| |||| ||| |||||||||||||| | |||||||| ||||| | ||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
4617189 |
ctctcttcacattcgtatcgatttccataccaatctcccattcattacaaataaatctacagtctgttggctggtcggcaaaaaatggccaacacaacat |
4617288 |
T |
|
| Q |
211 |
tggcactccagcacatatact |
231 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
4617289 |
tggcactccagcgcatatact |
4617309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 4601867 - 4602095
Alignment:
| Q |
22 |
tgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctcttctctctttaca |
121 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||||||||||| ||||| |||||| | |||| |||||||||||| ||| | | ||| |||||||| ||| |
|
|
| T |
4601867 |
tgccatcttcttcaactccatggccttttgcctcatcttcttgcctttatctccggctatcacttcattgatcagcttcgccaactcctctctcttcaca |
4601966 |
T |
|
| Q |
122 |
ttggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacattggcactccag |
221 |
Q |
| |
|
|| ||||| |||| ||| |||||||||||||| | |||||||| ||||| | | ||| || || |||||||| || ||||||||||| |||||||||| |
|
|
| T |
4601967 |
tttgtatcgatttccataccaatctcccattcattacaaataaatctacagtttgttggctgatcggcaaaaaaaggccaacacaacatcggcactccag |
4602066 |
T |
|
| Q |
222 |
cacatatactctccatgattgagttccat |
250 |
Q |
| |
|
||||||| || || || ||||||||||| |
|
|
| T |
4602067 |
cacatatgctttcagtggttgagttccat |
4602095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 4626019 - 4626257
Alignment:
| Q |
12 |
tgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctcttc |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||| | ||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||| | || |
|
|
| T |
4626019 |
tgttctcctctgccttcttcttcaactccatggccttttgcctcatcttctttccgttatctcctgccatcaatgcattgatcagtttctctaccccctc |
4626118 |
T |
|
| Q |
112 |
tctctttacattggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacatt |
211 |
Q |
| |
|
||||| ||||| | ||| |||| ||| |||||||||||||| | |||||| ||||| | ||| || ||||||||| ||| ||||||| |||| |
|
|
| T |
4626119 |
cctcttcacattagcatcgatttccattccaatctcccattcattgcaaatatatctacaatttgttggctgatcagcaaaatttggccaacacagcatt |
4626218 |
T |
|
| Q |
212 |
ggcactccagcacatatactctccatgattgagttccat |
250 |
Q |
| |
|
|| |||||||| ||||| || || ||| ||||||||||| |
|
|
| T |
4626219 |
ggaactccagcgcatatgctttcaatggttgagttccat |
4626257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 4256677 - 4256437
Alignment:
| Q |
11 |
gtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctctt |
110 |
Q |
| |
|
||||||| | ||| |||||||||||| ||| | ||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||| ||||| | |
|
|
| T |
4256677 |
gtgttcttctctgtcttcttcttcaattccatgaccttttgcctcatcttctttcctttttctcccgacatcaattcattgatcagattctccacctcat |
4256578 |
T |
|
| Q |
111 |
ctctctttacattggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggt-tggtcagcaaaaaatggtcaacacaaca |
209 |
Q |
| |
|
||||||| ||||| |||| |||| || |||||||||||||| |||||||| ||||| | | |||| || |||||||||||||| |||||||||| |
|
|
| T |
4256577 |
ctctcttcacattagtattgatttcaattccaatctcccattcgctacaaataaatctacagtttgttggtctgatcagcaaaaaatggccaacacaaca |
4256478 |
T |
|
| Q |
210 |
ttggcactccagcacatatactctccatgattgagttccat |
250 |
Q |
| |
|
|||| ||||| ||||| || || || ||| ||||||||||| |
|
|
| T |
4256477 |
ttggaactccggcacaaatgctttcaatggttgagttccat |
4256437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 4516388 - 4516511
Alignment:
| Q |
11 |
gtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctctt |
110 |
Q |
| |
|
|||| |||| |||||||||||||||| ||| | |||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| ||||| | |
|
|
| T |
4516388 |
gtgtcctcctctgccttcttcttcaattccatggccttttgcctcatcttctttcctttatctcccaccattaattcattgatcagcttctccacctcct |
4516487 |
T |
|
| Q |
111 |
ctctctttacattggtatcaattt |
134 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
4516488 |
ctctcttcacattggtatcaattt |
4516511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 4260219 - 4259980
Alignment:
| Q |
11 |
gtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctctt |
110 |
Q |
| |
|
||||||||| |||||||| ||||||||||| | |||||||||||||||||||||||| ||||| ||| | |||||||||||| ||| | ||||| | |
|
|
| T |
4260219 |
gtgttctcctctgccttcctcttcaactccatgaccttttgcctcatcttctttccttcttctcctgacataatttcattgatcagcttcgccacctcat |
4260120 |
T |
|
| Q |
111 |
ctctctttacattggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacat |
210 |
Q |
| |
|
|||| || ||||| |||| ||||| || |||||||||||||| | |||||||| ||||| | | ||| || |||||||||||||| ||||||||||| |
|
|
| T |
4260119 |
ctcttttcacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtttgttggctgatcagcaaaaaatggccaacacaacat |
4260020 |
T |
|
| Q |
211 |
tggcactccagcacatatactctccatgattgagttccat |
250 |
Q |
| |
|
||| ||| | ||||| || || || ||| ||||||||||| |
|
|
| T |
4260019 |
tggaacttcggcacaaatgctttcaatggttgagttccat |
4259980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 4560585 - 4560812
Alignment:
| Q |
23 |
gccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctcttctctctttacat |
122 |
Q |
| |
|
||||| ||||||| |||| | |||||||||||||||||||||||||| |||| | |||||||||||||| ||||||||| || || || |||||||||| |
|
|
| T |
4560585 |
gcctttttcttcagctccatggccttttgcctcatcttctttcctttatctcaggacatcaattcattgaccagtttctccacgtcctccctctttacat |
4560684 |
T |
|
| Q |
123 |
tggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacattggcactccagc |
222 |
Q |
| |
|
| |||||||||| | ||||||| |||||| | |||||| ||| | | | ||| || || ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
4560685 |
ttgtatcaatttcgtttccaatcttccattcattgcaaatatatcttcagtttgctggctgatctgcaaaaaatggccaacacaacattggaactccagc |
4560784 |
T |
|
| Q |
223 |
acatatactctccatgattgagttccat |
250 |
Q |
| |
|
|||||| || || || ||||||||||| |
|
|
| T |
4560785 |
acatatgctttcagtggttgagttccat |
4560812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 4574388 - 4574614
Alignment:
| Q |
24 |
ccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctcttctctctttacatt |
123 |
Q |
| |
|
|||||||||||| ||| | || ||||||||||||||||||||||| |||||| |||||||||||||| ||||||||| ||||| || ||||||||||| |
|
|
| T |
4574388 |
ccttcttcttcagctcaatggctttttgcctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacatt |
4574487 |
T |
|
| Q |
124 |
ggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacattggcactccagca |
223 |
Q |
| |
|
||||| |||| | | |||||||||||||| | |||||| ||| | | | ||| || || | ||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
4574488 |
agtatcgatttcctttccaatctcccattcattgcaaatatatctgcagtttgctggctgatccgaaaaaaatggccaacataacattggaactccagca |
4574587 |
T |
|
| Q |
224 |
catatactctccatgattgagttccat |
250 |
Q |
| |
|
||||| || || || ||||||||||| |
|
|
| T |
4574588 |
catatgctttcagtggttgagttccat |
4574614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 4515176 - 4514947
Alignment:
| Q |
21 |
ctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctcttctctctttac |
120 |
Q |
| |
|
|||||||||| ||||||||| | |||||| |||||| || |||||||||||||| |||||||||||||||| || || || ||||| |||||||| || |
|
|
| T |
4515176 |
ctgccttctttttcaactccataacctttttcctcattttatttcctttctctcccaccatcaattcattgacaagcttttcaacctcctctctcttcac |
4515077 |
T |
|
| Q |
121 |
attggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacattggcactcca |
220 |
Q |
| |
|
||| |||| |||| ||||||||||||||||| | ||||||| ||||| | | |||||| ||| |||| ||| | ||||| | ||||||||||||| |
|
|
| T |
4515076 |
attcatatcgatttcgatcccaatctcccattcattgcaaataaatctacagtttgttggttgatcaccaaagaattgccaacaaagcattggcactcca |
4514977 |
T |
|
| Q |
221 |
gcacatatactctccatgattgagttccat |
250 |
Q |
| |
|
|| ||||| ||||| || ||||||||||| |
|
|
| T |
4514976 |
gcgcatatgctctcagtggttgagttccat |
4514947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 4579512 - 4579738
Alignment:
| Q |
24 |
ccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctcttctctctttacatt |
123 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||| |||||||||| |||||||||||||| | ||| ||||| ||||| |||||||| ||||| |
|
|
| T |
4579512 |
ccttcttcttcaactcaattgccttttgcctcatcttctttgctttctctcccaccatcaattcattaaccagcttctccacctcctctctcttcacatt |
4579611 |
T |
|
| Q |
124 |
ggtatcaattttcatcccaatctcccat-tctt-cacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacattggcactccag |
221 |
Q |
| |
|
|| || |||| || ||||| | |||| | || || ||||| ||| | ||| | ||| || ||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
4579612 |
agtgtcgatttcaattccaattttccatgtattgcataaata--tctgcagcttactgggtgatcagcgaaaaatggccaacacaacattggaactccag |
4579709 |
T |
|
| Q |
222 |
cacatatactctccatgattgagttccat |
250 |
Q |
| |
|
|| |||| || || |||||||||||||| |
|
|
| T |
4579710 |
cagatatgctttcagtgattgagttccat |
4579738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 250
Target Start/End: Original strand, 4557227 - 4557431
Alignment:
| Q |
46 |
cttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctcttctctctttacattggtatcaattttcatcccaatc |
145 |
Q |
| |
|
||||| || |||||||||||||||||| || ||||||||||||||| || ||||||||||| |||||||| |||||||| ||||||| ||| |||||| |
|
|
| T |
4557227 |
ctttttccacatcttctttcctttctccccctccatcaattcattgaccaaattctctacctcatctctcttcacattggtgtcaatttccatgccaatc |
4557326 |
T |
|
| Q |
146 |
tcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacattggcactccagcacatatactctccatgattgagt |
245 |
Q |
| |
|
|||||| | |||||| ||| | | | ||| || |||||||||||||| |||||||||||||| ||||||||| |||| || || || |||||| |
|
|
| T |
4557327 |
tcccatgtattgcaaatatatctgcagtttgctggctgatcagcaaaaaatggccaacacaacattggaactccagcagatatgctttcagtggttgagt |
4557426 |
T |
|
| Q |
246 |
tccat |
250 |
Q |
| |
|
||||| |
|
|
| T |
4557427 |
tccat |
4557431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 4568137 - 4568246
Alignment:
| Q |
25 |
cttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctcttctctctttacattg |
124 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||| ||||| ||||| |||||||| ||||| |
|
|
| T |
4568137 |
cttcttcttcaactccacggccttttgcctcatcttttttcctttctgtcccaccattaattcattcatcagcttctccacctcctctctcttcacattt |
4568236 |
T |
|
| Q |
125 |
gtatcaattt |
134 |
Q |
| |
|
|||||||||| |
|
|
| T |
4568237 |
gtatcaattt |
4568246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 4505935 - 4506163
Alignment:
| Q |
22 |
tgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctcttctctctttaca |
121 |
Q |
| |
|
|||| |||| ||||||||| | |||||| ||||||||| |||||||||||||| ||||| | ||||| || ||| |||||||| | |||||| || ||| |
|
|
| T |
4505935 |
tgccctctttttcaactccatgacctttttcctcatcttgtttcctttctctccaaccataatttcatcgaccagcttctctacattttctctattcaca |
4506034 |
T |
|
| Q |
122 |
ttggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacattggcactccag |
221 |
Q |
| |
|
|| |||||||||| || ||||||||| |||| | ||||||| ||||| | | |||||| ||| |||| || || ||||||| |||||||||||||| |
|
|
| T |
4506035 |
ttagtatcaatttcgattccaatctccaattcattgcaaataaatctacagtttgttggttgatcaccaaagaacggccaacacagcattggcactccag |
4506134 |
T |
|
| Q |
222 |
cacatatactctccatgattgagttccat |
250 |
Q |
| |
|
| ||||| || || || ||||||||||| |
|
|
| T |
4506135 |
cgcatatgctttcagtggttgagttccat |
4506163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 4267231 - 4267014
Alignment:
| Q |
11 |
gtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctctt |
110 |
Q |
| |
|
|||||||| |||||||| ||||||||||| | |||||| ||||| | |||||||||||||| |||||||||||||||| | ||||| || || | |
|
|
| T |
4267231 |
gtgttctcttctgccttcctcttcaactccaagacattttgcttcatcatatttcctttctctcccaccatcaattcattgactaacttctcgacgtcat |
4267132 |
T |
|
| Q |
111 |
ctctctttacattggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacat |
210 |
Q |
| |
|
||||||| ||||| |||| |||| | |||||||||||||| | ||||||| ||||| | | ||| || ||| |||| ||||| ||||||||||| |
|
|
| T |
4267131 |
ctctcttcacatttgtattgatttcgagtccaatctcccattcatagcaaataaatctacagtttgttggctgatcaccaaagaatggccaacacaacat |
4267032 |
T |
|
| Q |
211 |
tggcactccagcacatat |
228 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4267031 |
tggcactccagcacatat |
4267014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 151
Target Start/End: Complemental strand, 4299791 - 4299671
Alignment:
| Q |
31 |
cttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctcttctctctttacattggtatca |
130 |
Q |
| |
|
|||||||||| | |||||||| |||||||| | |||||||||||| |||||||||||||||||||| || || ||||| |||||| | ||||| ||||| |
|
|
| T |
4299791 |
cttcaactcccttgccttttgtctcatcttatctcctttctctcccaccatcaattcattgatcagcttttccacctcctctctcctcacatttgtatcg |
4299692 |
T |
|
| Q |
131 |
attttcatcccaatctcccat |
151 |
Q |
| |
|
|||| || |||||||||||| |
|
|
| T |
4299691 |
atttcgattccaatctcccat |
4299671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 250
Target Start/End: Original strand, 4598273 - 4598477
Alignment:
| Q |
46 |
cttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctcttctctctttacattggtatcaattttcatcccaatc |
145 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||||||| |||| ||| ||||| ||||| |||||||| ||||| || |||||||| || |||||| |
|
|
| T |
4598273 |
cttttgcctcattttctttcctttatctcccgacatcaattcgttgaccagcttctccacctcctctctcttcacattagtttcaattttgattccaatc |
4598372 |
T |
|
| Q |
146 |
tcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacattggcactccagcacatatactctccatgattgagt |
245 |
Q |
| |
|
|||||||| | |||||| ||| | | | | | || || || ||||| || |||||||||||||||||||| ||||||||||| || || |||||| |
|
|
| T |
4598373 |
tcccattcattgcaaatatatctgcagttggcttgctgatccgcgaaaaagggacaacacaacattggcactccggcacatatactttcagtggttgagt |
4598472 |
T |
|
| Q |
246 |
tccat |
250 |
Q |
| |
|
||||| |
|
|
| T |
4598473 |
tccat |
4598477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 4469883 - 4470109
Alignment:
| Q |
24 |
ccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctcttctctctttacatt |
123 |
Q |
| |
|
|||||||||| |||||| | ||||| ||||||||||||||| |||||||| |||||||||||||||| || ||||| ||||| |||||||| |||| |
|
|
| T |
4469883 |
ccttcttcttgaactccatgatcttttccctcatcttctttccattctctccaaccatcaattcattgactagcttctccacctcatctctcttcacatc |
4469982 |
T |
|
| Q |
124 |
ggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacattggcactccagca |
223 |
Q |
| |
|
|||| |||| | |||||||||||||| | ||||||| ||||| | | | || ||| |||| ||||| ||||||||||||||||||||||| |
|
|
| T |
4469983 |
tttatcgatttcaagtccaatctcccattcattgcaaataaatctacaatttgctagctgatcaccaaagaatggccaacacaacattggcactccagcg |
4470082 |
T |
|
| Q |
224 |
catatactctccatgattgagttccat |
250 |
Q |
| |
|
||||| || || || ||||||||||| |
|
|
| T |
4470083 |
catatgctttcagtggttgagttccat |
4470109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 4571037 - 4571179
Alignment:
| Q |
9 |
tcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctc |
108 |
Q |
| |
|
|||||| |||| | ||||||||||||| |||| | |||| |||||||||||||||||| ||||| |||||||||||||||| || ||||| ||||| |
|
|
| T |
4571037 |
tcgtgtcctcctccgccttcttcttcatctccattatatttttcctcatcttctttcctttatctcccaccatcaattcattgaccaaattctccacctc |
4571136 |
T |
|
| Q |
109 |
ttctctctttacattggtatcaattttcatcccaatctcccat |
151 |
Q |
| |
|
| |||||| ||||| ||||| |||| || |||||||||||| |
|
|
| T |
4571137 |
atttctcttcacattagtatcgatttcgattccaatctcccat |
4571179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 4622219 - 4622349
Alignment:
| Q |
21 |
ctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctcttctctctttac |
120 |
Q |
| |
|
||||||||| |||||||||| | |||||||| ||||||||||||||||| ||||| |||||||||||||||||| ||| ||||| ||||| || || |
|
|
| T |
4622219 |
ctgccttctccttcaactccatggccttttgtctcatcttctttcctttatctcccgacatcaattcattgatcagattcgacacctcctctcttttcac |
4622318 |
T |
|
| Q |
121 |
attggtatcaattttcatcccaatctcccat |
151 |
Q |
| |
|
||| |||| |||| || |||||||||||| |
|
|
| T |
4622319 |
attagtattgatttcgattccaatctcccat |
4622349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 4461203 - 4461407
Alignment:
| Q |
24 |
ccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctcttctctctttacatt |
123 |
Q |
| |
|
|||||||||| || ||| | |||||||||||||||||||||| ||||||| ||||||||||| |||| || ||||| ||||| || ||||| |||| |
|
|
| T |
4461203 |
ccttcttcttgaattccatgaccttttgcctcatcttctttccaatctctccaaccatcaattcgttgaccaacttctccacctcatccctcttcacatc |
4461302 |
T |
|
| Q |
124 |
ggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacattggcactccagca |
223 |
Q |
| |
|
|||| |||| | ||||||||||||| | ||||||| ||||| | | ||| || ||| |||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
4461303 |
tttatcgatttcaagtccaatctcccatttgttgcaaataaatctacagtttgctggctgatcaccaaagaatggccaacacaacatcggcactccagca |
4461402 |
T |
|
| Q |
224 |
catat |
228 |
Q |
| |
|
||||| |
|
|
| T |
4461403 |
catat |
4461407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 228
Target Start/End: Original strand, 4457715 - 4457878
Alignment:
| Q |
65 |
cctttctctccgaccatcaattcattgatcagtttctctacctcttctctctttacattggtatcaattttcatcccaatctcccattcttcacaaataa |
164 |
Q |
| |
|
||||| ||||| |||||||||||||||| | ||||| ||||| |||||||| ||||| ||||| |||| |||||||||||| ||||| | ||||||| |
|
|
| T |
4457715 |
cctttttctcccaccatcaattcattgactaacttctccacctcatctctcttcacatttgtatcgatttccatcccaatctctcattcattgcaaataa |
4457814 |
T |
|
| Q |
165 |
ttctactgctaagtggttggtcagcaaaaaatggtcaacacaacattggcactccagcacatat |
228 |
Q |
| |
|
||||| || ||| | ||| |||| ||||| |||| || ||||||||||||||| ||||| |
|
|
| T |
4457815 |
atctacaacttgttggcttatcaccaaagaatggccaacgcagcattggcactccagcgcatat |
4457878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 4493022 - 4493239
Alignment:
| Q |
11 |
gtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctctt |
110 |
Q |
| |
|
|||| |||| |||||||||| ||||||||||| || ||| ||||||||| |||||||||||||| ||||| | ||||||| ||| ||||| || | || |
|
|
| T |
4493022 |
gtgtcctcctctgccttctttttcaactccgtggcttttctcctcatcttgtttcctttctctccaaccataatctcattgaccagattctccacatttt |
4493121 |
T |
|
| Q |
111 |
ctctctttacattggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacat |
210 |
Q |
| |
|
|||| || ||||| |||| |||| | ||||||||| |||| | ||||| | ||||| | | ||| || ||| ||| || || ||||||||||| |
|
|
| T |
4493122 |
ctctattaacattcctatcgatttctactccaatctccaattcattgcaaatcaatctacagtttgttggctgatcactaaagaaaggccaacacaacat |
4493221 |
T |
|
| Q |
211 |
tggcactccagcacatat |
228 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
4493222 |
tggcactccggcacatat |
4493239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 1674293 - 1674532
Alignment:
| Q |
11 |
gtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctctt |
110 |
Q |
| |
|
||||||||| |||||||||||||||| ||| | ||||||||||||||||| ||||| |||||||| ||||||||||||||||| || ||||| | | | |
|
|
| T |
1674293 |
gtgttctcctctgccttcttcttcaattccatggccttttgcctcatcttttttccattctctcccaccatcaattcattgataagcttctccaaaccct |
1674392 |
T |
|
| Q |
111 |
ctctctttacattggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacat |
210 |
Q |
| |
|
||||||| ||||| |||||||||| ||| ||||||| |||||| | |||||||| ||||| | | ||| || |||||||||||||| ||||||||||| |
|
|
| T |
1674393 |
ctctcttcacattcgtatcaatttccataccaatcttccattcattacaaataaatctacagtttgttggctgatcagcaaaaaatggccaacacaacat |
1674492 |
T |
|
| Q |
211 |
tggcactccagcacatatactctccatgattgagttccat |
250 |
Q |
| |
|
|||||||||||| ||||| || || || ||||||||||| |
|
|
| T |
1674493 |
tggcactccagcgcatatgctttcagtggttgagttccat |
1674532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 46 - 250
Target Start/End: Complemental strand, 16686297 - 16686093
Alignment:
| Q |
46 |
cttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctcttctctctttacattggtatcaattttcatcccaatc |
145 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||| || |||||| ||||| |||||||| |||||||| ||||||| ||| |||||| |
|
|
| T |
16686297 |
ctttttcctcatcttctttcctttctctcccaccatcaattcattgaccaatttctccacctcatctctcttcacattggtgtcaatttccatgccaatc |
16686198 |
T |
|
| Q |
146 |
tcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacattggcactccagcacatatactctccatgattgagt |
245 |
Q |
| |
|
|||||||| | |||||| ||| | | ||| || |||||||||||||| |||||||||||||| ||||||||| ||||||| || || |||||| |
|
|
| T |
16686197 |
tcccattcattgcaaatatatctgcattttgctggctgatcagcaaaaaatggccaacacaacattggaactccagcatatatactttcagtggttgagt |
16686098 |
T |
|
| Q |
246 |
tccat |
250 |
Q |
| |
|
||||| |
|
|
| T |
16686097 |
tccat |
16686093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 20863908 - 20863669
Alignment:
| Q |
11 |
gtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctctt |
110 |
Q |
| |
|
|||| |||| ||||||||||||||||||| | | ||||||||||||| || ||||||||||||| |||||||||||||| | ||| |||| ||||| | |
|
|
| T |
20863908 |
gtgtcctcctctgccttcttcttcaactcatttgtcttttgcctcatcctccttcctttctctcccaccatcaattcatttaccagcatctccacctcct |
20863809 |
T |
|
| Q |
111 |
ctctctttacattggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacat |
210 |
Q |
| |
|
||||||| |||||||| ||||||| |||||||||||||||| | ||||| ||| | | | || || |||||||||||||| || |||||||| |
|
|
| T |
20863808 |
ctctcttgacattggtgtcaatttcgatcccaatctcccatttgttgcaaatgtatctgcagtttgtcggctgatcagcaaaaaatggccagcacaacat |
20863709 |
T |
|
| Q |
211 |
tggcactccagcacatatactctccatgattgagttccat |
250 |
Q |
| |
|
|||||||||||||||||| ||||| ||| ||||||||||| |
|
|
| T |
20863708 |
tggcactccagcacatatgctctcaatggttgagttccat |
20863669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 28000164 - 27999925
Alignment:
| Q |
11 |
gtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctctt |
110 |
Q |
| |
|
||||||||| ||||||| |||||||||||| | ||||||||||||||||| ||||| |||||||| ||||||||||||||||| || ||||| | || | |
|
|
| T |
28000164 |
gtgttctcctctgcctttttcttcaactccatggccttttgcctcatcttttttccattctctcccaccatcaattcattgataagcttctccaaatcct |
28000065 |
T |
|
| Q |
111 |
ctctctttacattggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacat |
210 |
Q |
| |
|
|| |||| ||||| ||||||||| ||| ||||||| |||||| | |||||||| ||||| | | ||| || ||||||||||||| ||||||||||| |
|
|
| T |
28000064 |
ctatcttcacattcatatcaatttccataccaatcttccattcattacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacat |
27999965 |
T |
|
| Q |
211 |
tggcactccagcacatatactctccatgattgagttccat |
250 |
Q |
| |
|
|||||||||||| ||||| || || || ||||||||||| |
|
|
| T |
27999964 |
tggcactccagcgcatatgctttcggtggttgagttccat |
27999925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 24103066 - 24103305
Alignment:
| Q |
11 |
gtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctctt |
110 |
Q |
| |
|
|||||||| ||||||||||||| |||||| |||||||| ||||| ||||||| |||||||| |||||||||||||||| | ||||| || || | |
|
|
| T |
24103066 |
gtgttctcttctgccttcttcttgaactccaagaccttttgcttcatcgtctttccgttctctcccaccatcaattcattgactaacttctcgacgtcat |
24103165 |
T |
|
| Q |
111 |
ctctctttacattggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacat |
210 |
Q |
| |
|
||||||| ||||| ||||| |||| | |||||||||||||| | ||||||| ||||| | | |||||| ||| |||| ||||| ||||||||||| |
|
|
| T |
24103166 |
ctctcttcacatttgtatcgatttcgagtccaatctcccattcatagcaaataaatctacagtttgttggttgatcaccaaagaatggccaacacaacat |
24103265 |
T |
|
| Q |
211 |
tggcactccagcacatatactctccatgattgagttccat |
250 |
Q |
| |
|
|||||||||||||||||| || || || ||||||||||| |
|
|
| T |
24103266 |
tggcactccagcacatatgctttcagtggttgagttccat |
24103305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 4751 - 4611
Alignment:
| Q |
11 |
gtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctctt |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||| | |||||||||||||||||| ||||||| ||||| ||||||||||||||||| ||| ||||| | |
|
|
| T |
4751 |
gtgttctcctctgccttcttcttcaactccatggccttttgcctcatcttcattcctttatctcccgacatcaattcattgatcatattcgttaccttct |
4652 |
T |
|
| Q |
111 |
ctctctttacattggtatcaattttcatcccaatctcccat |
151 |
Q |
| |
|
||||||| ||||| |||||||||| ||| ||| |||||||| |
|
|
| T |
4651 |
ctctcttcacattagtatcaatttccataccagtctcccat |
4611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 4571 - 4512
Alignment:
| Q |
191 |
aaaaatggtcaacacaacattggcactccagcacatatactctccatgattgagttccat |
250 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||| || || ||| ||||||||||| |
|
|
| T |
4571 |
aaaaatggccaacacaacattggcactcctacacatatgctttcaatggttgagttccat |
4512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 223
Target Start/End: Original strand, 3086523 - 3086699
Alignment:
| Q |
47 |
ttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctcttctctctttacattggtatcaattttcatcccaatct |
146 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||| ||||| |||| || ||||||| |
|
|
| T |
3086523 |
ttttgcctcatcttctttcctttatctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatct |
3086622 |
T |
|
| Q |
147 |
cccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacattggcactccagca |
223 |
Q |
| |
|
||||| | || ||| ||||| | | | |||||| || || ||||||| |||||||||||||||||||||||| |
|
|
| T |
3086623 |
cccatatattgcagatatatctacagtttattggttgatctccataaaatggccaacacaacattggcactccagca |
3086699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 1281181 - 1281420
Alignment:
| Q |
11 |
gtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctctt |
110 |
Q |
| |
|
||||||||| | ||| ||||||||| ||| | ||||||| ||||| |||||||||| || ||| | |||||||||||||||| || | ||||| | |
|
|
| T |
1281181 |
gtgttctcctccgccgccttcttcaattccatggccttttctctcatattctttccttcatccccggctatcaattcattgatcaacttagccacctcct |
1281280 |
T |
|
| Q |
111 |
ctctctttacattggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacat |
210 |
Q |
| |
|
||||||| ||||| ||||| |||| ||| ||||||| |||||| | |||||||| ||||| | ||| || |||||||||||||| ||||||||||| |
|
|
| T |
1281281 |
ctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctgatcagcaaaaaatggccaacacaacat |
1281380 |
T |
|
| Q |
211 |
tggcactccagcacatatactctccatgattgagttccat |
250 |
Q |
| |
|
|||||||||||||||||| || || || ||||||||||| |
|
|
| T |
1281381 |
tggcactccagcacatatgctttcagtggttgagttccat |
1281420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 3784 - 3567
Alignment:
| Q |
11 |
gtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcctttctctccgaccatcaattcattgatcagtttctctacctctt |
110 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||| |||||||||||| || ||||| ||||| | |
|
|
| T |
3784 |
gtgttctcctctgccttcttctttaactccacggccttttgcctcatcttctttcctttctctcccaccgtcaattcattgactagcttctccacctcat |
3685 |
T |
|
| Q |
111 |
ctctctttacattggtatcaattttcatcccaatctcccattcttcacaaataattctactgctaagtggttggtcagcaaaaaatggtcaacacaacat |
210 |
Q |
| |
|
||||||| |||| |||| |||| | |||||||||||||| | ||||||| ||||| | | ||| || ||| |||| ||||| ||||| | ||| |
|
|
| T |
3684 |
ctctcttcacatccatatcgatttcaagtccaatctcccattcgttgcaaataaatctacagtttgttggctgatcaccaaagaatggccaacaaagcat |
3585 |
T |
|
| Q |
211 |
tggcactccagcacatat |
228 |
Q |
| |
|
||| |||||||| ||||| |
|
|
| T |
3584 |
tggtactccagcgcatat |
3567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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