View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9947_low_3 (Length: 217)

Name: NF9947_low_3
Description: NF9947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9947_low_3
NF9947_low_3
[»] chr6 (35 HSPs)
chr6 (1-192)||(4493283-4493483)
chr6 (82-193)||(4482333-4482448)
chr6 (82-193)||(3173471-3173586)
chr6 (86-174)||(4488765-4488853)
chr6 (82-168)||(4575923-4576009)
chr6 (86-168)||(4462679-4462761)
chr6 (82-168)||(4471382-4471468)
chr6 (82-176)||(4513545-4513639)
chr6 (86-175)||(4603582-4603671)
chr6 (88-168)||(4497819-4497899)
chr6 (82-153)||(4562130-4562201)
chr6 (86-172)||(4558597-4558683)
chr6 (82-172)||(4612288-4612378)
chr6 (82-168)||(4627618-4627704)
chr6 (4-64)||(4602120-4602180)
chr6 (82-175)||(4618769-4618862)
chr6 (82-174)||(4507379-4507471)
chr6 (1-64)||(4266907-4266970)
chr6 (1-64)||(4514862-4514925)
chr6 (63-168)||(4255395-4255503)
chr6 (82-168)||(4265631-4265717)
chr6 (11-64)||(4617360-4617413)
chr6 (13-64)||(3172081-3172132)
chr6 (121-172)||(4472613-4472664)
chr6 (1-64)||(4564039-4564102)
chr6 (82-153)||(4569538-4569609)
chr6 (11-61)||(4481031-4481081)
chr6 (82-168)||(4517808-4517894)
chr6 (86-172)||(4572438-4572524)
chr6 (82-168)||(4623775-4623861)
chr6 (11-64)||(4560844-4560897)
chr6 (86-175)||(4565501-4565590)
chr6 (11-64)||(4574646-4574699)
chr6 (86-175)||(4594482-4594571)
chr6 (124-168)||(4258750-4258794)
[»] chr8 (4 HSPs)
chr8 (82-172)||(20862380-20862470)
chr8 (84-175)||(1675991-1676082)
chr8 (25-64)||(20863584-20863623)
chr8 (11-64)||(1674564-1674617)
[»] chr3 (2 HSPs)
chr3 (82-172)||(1282901-1282991)
chr3 (11-64)||(1281452-1281505)
[»] scaffold0199 (1 HSPs)
scaffold0199 (84-175)||(1228-1319)
[»] chr5 (2 HSPs)
chr5 (82-165)||(24104563-24104646)
chr5 (1-64)||(24103327-24103390)
[»] scaffold0475 (1 HSPs)
scaffold0475 (82-172)||(2292-2382)
[»] scaffold0288 (1 HSPs)
scaffold0288 (82-175)||(2018-2111)
[»] scaffold0477 (1 HSPs)
scaffold0477 (1-64)||(4427-4490)
[»] chr7 (1 HSPs)
chr7 (82-168)||(3088213-3088299)


Alignment Details
Target: chr6 (Bit Score: 128; Significance: 2e-66; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 4493283 - 4493483
Alignment:
Q  1 ccaatcgaatggtggttcagcagtttctcttgtggacaccaactagcaattaggcctctatctgtgattgtattcggtgtcaaagcctctaagg------ 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  4493283 ccaatcgaatggtggttcagcagtttctcttgtggacaccaactagcaattaggcctctatctgtgattgtattcggtgtcaaagcctctaaggcctcta 4493382  T
Q  95 --tgaagtagttttc-ctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtggttttctgcaaagttactcatgtt 191  Q
      ||   | || |||   |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  4493383 tctgtgattgtattcagcagtttcagcattgcattgatatgaccttgagctggaaatggaatcaacactgcatgtggttttctgcaaagttactaatgtt 4493482  T
Q  192 t 192  Q
    |    
T  4493483 t 4493483  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 82 - 193
Target Start/End: Original strand, 4482333 - 4482448
Alignment:
Q  82 aaagcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtgg----ttttctgca 177  Q
    ||||||||||||||||||||||||||||| ||||| || |||||||||||| |||||||||||||||||||||||||||||||||||    |||||||||    
T  4482333 aaagcctctaaggtgaagtagttttcctattttcaacaatgcattgatatggccttgagctggaaatggagtcaacactgcatgtggttttttttctgca 4482432  T
Q  178 aagttactcatgtttg 193  Q
    ||||||||||| ||||    
T  4482433 aagttactcatctttg 4482448  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 82 - 193
Target Start/End: Original strand, 3173471 - 3173586
Alignment:
Q  82 aaagcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtggttttc----tgca 177  Q
    ||||||||||| ||||||||||||| ||||||||| || |||||||||||| |||||| ||||| ||||||| |||||||||||||||||||    ||||    
T  3173471 aaagcctctaaagtgaagtagttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggttttctctttgca 3173570  T
Q  178 aagttactcatgtttg 193  Q
    ||||||||||| ||||    
T  3173571 aagttactcatctttg 3173586  T

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Target: chr6; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 4488853 - 4488765
Alignment:
Q  86 cctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtggttttct 174  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| |||||| |||||||||| || |||||||||||||| |||||    
T  4488853 cctctaaggtgaagtagttttcctagtttcaacaatgcattgatatggccttgaactggaaatggtgttaacactgcatgtggctttct 4488765  T

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Target: chr6; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 4575923 - 4576009
Alignment:
Q  82 aaagcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtgg 168  Q
    |||||||||||||||||| |||||| ||| ||||| || |||||||||||| |||||| ||||||||||||| ||||||||||||||    
T  4575923 aaagcctctaaggtgaagcagttttgctattttcaacaatgcattgatatggccttgaactggaaatggagttaacactgcatgtgg 4576009  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 4462679 - 4462761
Alignment:
Q  86 cctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtgg 168  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| ||||| | |||| ||||| ||||||| ||||||||    
T  4462679 cctctaaggtgaagtagttttcctagtttcaacaatgcattgatatggccttgggatggacatggaatcaacacagcatgtgg 4462761  T

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Target: chr6; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 4471382 - 4471468
Alignment:
Q  82 aaagcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtgg 168  Q
    |||||||||||||||||| || ||| ||||||||| || |||||||||||| |||||||||||| ||||| |||| || ||||||||    
T  4471382 aaagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtgg 4471468  T

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Target: chr6; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 4513639 - 4513545
Alignment:
Q  82 aaagcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtggttttctgc 176  Q
    ||||||||||||||||||||||||| ||| | | | ||||| ||||||||| ||||||  |||| ||||| ||||||| ||||||||||||||||    
T  4513639 aaagcctctaaggtgaagtagttttgctaatctgaacattggattgatatggccttgaagtggatatggaatcaacacagcatgtggttttctgc 4513545  T

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Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 175
Target Start/End: Original strand, 4603582 - 4603671
Alignment:
Q  86 cctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtggttttctg 175  Q
    ||||||||||||| ||||||| ||||||||| ||||| ||||||||| ||||||  |||| ||||| ||||||| |||||| ||||||||    
T  4603582 cctctaaggtgaaatagttttgctagtttcaacattggattgatatggccttgaagtggatatggaatcaacacagcatgttgttttctg 4603671  T

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Target: chr6; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 4497899 - 4497819
Alignment:
Q  88 tctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtgg 168  Q
    |||||||||||||| |||||||||||||| || || ||||||||| |||| |  |||||||||||| ||||||||||||||    
T  4497899 tctaaggtgaagtaattttcctagtttcaacaatggattgatatggccttaaattggaaatggagttaacactgcatgtgg 4497819  T

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Target: chr6; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 4562130 - 4562201
Alignment:
Q  82 aaagcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagt 153  Q
    ||||||||| |||||||| |||||| ||| ||||| || ||||||||||||||||||| |||||||||||||    
T  4562130 aaagcctcttaggtgaagcagttttgctattttcaacaatgcattgatatgaccttgaactggaaatggagt 4562201  T

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Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 4558597 - 4558683
Alignment:
Q  86 cctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtggtttt 172  Q
    |||||||||||||| |||||| ||||||||| || || ||||||||| |||||| ||||| ||||| | ||||| ||||||||||||    
T  4558597 cctctaaggtgaagaagttttgctagtttcaacaatggattgatatggccttgaactggatatggaattaacacagcatgtggtttt 4558683  T

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Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 4612378 - 4612288
Alignment:
Q  82 aaagcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtggtttt 172  Q
    |||||||||||||||||| |||||| ||||||| |  | || ||||||||| |||||| ||||| ||||| | ||||||||||||||||||    
T  4612378 aaagcctctaaggtgaagaagttttgctagtttgattaatggattgatatggccttgaactggatatggaattaacactgcatgtggtttt 4612288  T

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Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 4627618 - 4627704
Alignment:
Q  82 aaagcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtgg 168  Q
    |||||||||||||||||||| |||| ||||| ||| || || ||||||||| ||||||  |||||||||| ||||||| ||||||||    
T  4627618 aaagcctctaaggtgaagtaattttgctagtatcaacaatggattgatatggccttgaagtggaaatggaatcaacacagcatgtgg 4627704  T

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Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 4602120 - 4602180
Alignment:
Q  4 atcgaatggtggttcagcagtttctcttgtggacaccaactagcaattaggcctctatctg 64  Q
    |||||| ||||||||| || ||||||||||||||||||||| || ||||||||||||||||    
T  4602120 atcgaagggtggttcaacactttctcttgtggacaccaacttgctattaggcctctatctg 4602180  T

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Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 175
Target Start/End: Original strand, 4618769 - 4618862
Alignment:
Q  82 aaagcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtggttttctg 175  Q
    |||||||||||||||||| || ||| ||||||| | || || ||||||||| |||||| ||||| ||||| ||| |||  ||||||||||||||    
T  4618769 aaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggttttctg 4618862  T

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Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 174
Target Start/End: Original strand, 4507379 - 4507471
Alignment:
Q  82 aaagcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtggttttct 174  Q
    |||||||| ||||||||| || ||  ||||||| | || || ||||||||| ||||||| |||| ||||| ||||||| ||||||||||||||    
T  4507379 aaagcctcgaaggtgaagaagcttagctagtttgaacaatggattgatatggccttgagttggatatggaatcaacacagcatgtggttttct 4507471  T

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Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 4266970 - 4266907
Alignment:
Q  1 ccaatcgaatggtggttcagcagtttctcttgtggacaccaactagcaattaggcctctatctg 64  Q
    ||||||||| ||||||||| || ||| ||||||||||||||||| || ||||| ||||||||||    
T  4266970 ccaatcgaagggtggttcaacactttatcttgtggacaccaacttgctattagtcctctatctg 4266907  T

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Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 4514925 - 4514862
Alignment:
Q  1 ccaatcgaatggtggttcagcagtttctcttgtggacaccaactagcaattaggcctctatctg 64  Q
    ||||| ||| |||||||||  | ||||||||||||||||||||| || ||||||||||||||||    
T  4514925 ccaattgaagggtggttcaaaactttctcttgtggacaccaacttgctattaggcctctatctg 4514862  T

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Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 4255503 - 4255395
Alignment:
Q  63 tgtgattgtattcggtgt---caaagcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacac 159  Q
    ||||||||||||||||||   |||||||| |||| ||||||| |||| ||||||| |  | |  ||||||||| |||||| ||||| ||||| |||||||    
T  4255503 tgtgattgtattcggtgttgacaaagcctttaagatgaagtaattttgctagtttgaataatagattgatatggccttgaactggatatggaatcaacac 4255404  T
Q  160 tgcatgtgg 168  Q
     ||||||||    
T  4255403 agcatgtgg 4255395  T

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Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 4265717 - 4265631
Alignment:
Q  82 aaagcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtgg 168  Q
    |||||||||||||||||| || |||||||| || | || |||||||||||| ||||||  ||||  |||| ||||||| ||||||||    
T  4265717 aaagcctctaaggtgaagaagctttcctagattgaacaatgcattgatatggccttgaaatggagctggaatcaacacagcatgtgg 4265631  T

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Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 4617360 - 4617413
Alignment:
Q  11 ggtggttcagcagtttctcttgtggacaccaactagcaattaggcctctatctg 64  Q
    ||||||||| || ||| ||||||||||||||||| || ||||||||||||||||    
T  4617360 ggtggttcaacactttgtcttgtggacaccaacttgctattaggcctctatctg 4617413  T

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Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 3172081 - 3172132
Alignment:
Q  13 tggttcagcagtttctcttgtggacaccaactagcaattaggcctctatctg 64  Q
    ||||||| || ||||||||| ||||||||||| || ||||||||||||||||    
T  3172081 tggttcaacactttctcttgcggacaccaacttgctattaggcctctatctg 3172132  T

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Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 4472613 - 4472664
Alignment:
Q  121 tgcattgatatgaccttgagctggaaatggagtcaacactgcatgtggtttt 172  Q
    |||||||||||| ||||| | |||| ||||| ||||||||||||||||||||    
T  4472613 tgcattgatatggccttggggtggacatggaatcaacactgcatgtggtttt 4472664  T

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Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 4564039 - 4564102
Alignment:
Q  1 ccaatcgaatggtggttcagcagtttctcttgtggacaccaactagcaattaggcctctatctg 64  Q
    ||||| ||| |||||||||  | |||||| |||||||||||||| ||||||| |||||||||||    
T  4564039 ccaattgaagggtggttcaatactttctcctgtggacaccaacttgcaattaagcctctatctg 4564102  T

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Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 4569538 - 4569609
Alignment:
Q  82 aaagcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagt 153  Q
    |||||||||||||||||| |||||| |||||||||  | || ||||||||| ||||||  |||| |||||||    
T  4569538 aaagcctctaaggtgaagaagttttgctagtttcaataatggattgatatggccttgaagtggatatggagt 4569609  T

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Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 4481031 - 4481081
Alignment:
Q  11 ggtggttcagcagtttctcttgtggacaccaactagcaattaggcctctat 61  Q
    |||||||||  | ||||||||||||||||||||| || |||||||||||||    
T  4481031 ggtggttcaaaactttctcttgtggacaccaacttgctattaggcctctat 4481081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 4517808 - 4517894
Alignment:
Q  82 aaagcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtgg 168  Q
    |||||||||||| ||||| |||||| ||||||| | ||  | ||||||||| ||||||  |||| ||||||| | ||||||||||||    
T  4517808 aaagcctctaagatgaagaagttttgctagttttaacaacggattgatatggccttgaagtggatatggagttatcactgcatgtgg 4517894  T

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Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 4572438 - 4572524
Alignment:
Q  86 cctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtggtttt 172  Q
    |||||||||||||| | |||| |||||| || || || ||||||||| |||||| ||||| ||||  | ||||| ||||||||||||    
T  4572438 cctctaaggtgaagaaattttgctagttgcaacaatggattgatatggccttgaactggatatgggattaacacagcatgtggtttt 4572524  T

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Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 4623775 - 4623861
Alignment:
Q  82 aaagcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtgg 168  Q
    ||||||| |||||| ||| || ||| ||||||| | || || |||||||||||||||| ||||| ||| | ||||||| ||||||||    
T  4623775 aaagcctttaaggtaaagaagctttgctagtttgaacaatggattgatatgaccttgaactggatatgcaatcaacacagcatgtgg 4623861  T

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Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 4560844 - 4560897
Alignment:
Q  11 ggtggttcagcagtttctcttgtggacaccaactagcaattaggcctctatctg 64  Q
    |||||||||  | ||||||||||||||||||||| || ||||| ||||||||||    
T  4560844 ggtggttcaatactttctcttgtggacaccaacttgctattagtcctctatctg 4560897  T

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Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 175
Target Start/End: Original strand, 4565501 - 4565590
Alignment:
Q  86 cctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtggttttctg 175  Q
    |||||||||||||| |||||| | ||||| | || || ||| ||||| ||||||  ||||  |||| ||||||| |||||||||||||||    
T  4565501 cctctaaggtgaagaagttttgcaagtttgaacaatggatttatatgtccttgaaatggagctggaatcaacacagcatgtggttttctg 4565590  T

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Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 4574646 - 4574699
Alignment:
Q  11 ggtggttcagcagtttctcttgtggacaccaactagcaattaggcctctatctg 64  Q
    |||||||||  | ||||||||||||||||||||| || ||||| ||||||||||    
T  4574646 ggtggttcaatactttctcttgtggacaccaacttgctattagtcctctatctg 4574699  T

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Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 175
Target Start/End: Original strand, 4594482 - 4594571
Alignment:
Q  86 cctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtggttttctg 175  Q
    |||||||||||||| |||||| | ||||| | || || ||| ||||| ||||||  ||||  |||| ||||||| |||||||||||||||    
T  4594482 cctctaaggtgaagaagttttgcaagtttgaacaatggatttatatgtccttgaagtggagctggaatcaacacagcatgtggttttctg 4594571  T

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Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 4258794 - 4258750
Alignment:
Q  124 attgatatgaccttgagctggaaatggagtcaacactgcatgtgg 168  Q
    ||||||||| |||||||||||| ||||| ||||||| ||||||||    
T  4258794 attgatatggccttgagctggatatggaatcaacacagcatgtgg 4258750  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 20862470 - 20862380
Alignment:
Q  82 aaagcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtggtttt 172  Q
    ||||||||||||||||||||||||| ||||||| | ||||| ||||||||||||||||  |||| ||||||| ||||||||||||||||||    
T  20862470 aaagcctctaaggtgaagtagttttgctagttttaacattggattgatatgaccttgaagtggatatggagttaacactgcatgtggtttt 20862380  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 1675991 - 1676082
Alignment:
Q  84 agcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtggttttctg 175  Q
    |||||||||||||||  |||||| ||||||| | || || ||||||||| |||||||||||| ||||| | ||||| ||||||| |||||||    
T  1675991 agcctctaaggtgaataagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatgaacacagcatgtgattttctg 1676082  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 20863623 - 20863584
Alignment:
Q  25 ttctcttgtggacaccaactagcaattaggcctctatctg 64  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  20863623 ttctcttgtggacaccaactcgcgattaggcctctatctg 20863584  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 1674564 - 1674617
Alignment:
Q  11 ggtggttcagcagtttctcttgtggacaccaactagcaattaggcctctatctg 64  Q
    ||||||||| || ||||||||||||||||||| | |  ||||||||||||||||    
T  1674564 ggtggttcaacactttctcttgtggacaccaatttgatattaggcctctatctg 1674617  T

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Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 1282901 - 1282991
Alignment:
Q  82 aaagcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtggtttt 172  Q
    ||||||||||||||||||||||||| ||||||| | || || ||||||||| |||||||||||| ||||| ||||||| ||||||||||||    
T  1282901 aaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcaacacagcatgtggtttt 1282991  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 1281452 - 1281505
Alignment:
Q  11 ggtggttcagcagtttctcttgtggacaccaactagcaattaggcctctatctg 64  Q
    ||||||||| || ||||||||||||||||||||| || ||||||||||||||||    
T  1281452 ggtggttcaacactttctcttgtggacaccaacttgctattaggcctctatctg 1281505  T

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Target: scaffold0199 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 1228 - 1319
Alignment:
Q  84 agcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtggttttctg 175  Q
    |||||||||||||||  |||||| ||||||| | || || ||||||||| |||||||||||| ||||| | ||||| ||||||| |||||||    
T  1228 agcctctaaggtgaataagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatgaacacagcatgtgattttctg 1319  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 24104563 - 24104646
Alignment:
Q  82 aaagcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatg 165  Q
    |||||||||||||||||| || ||||||||||| | || |||||||||||||||||||  ||||  |||| ||||||| |||||    
T  24104563 aaagcctctaaggtgaagaagctttcctagtttgaacaatgcattgatatgaccttgaaatggagctggaatcaacacagcatg 24104646  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 24103327 - 24103390
Alignment:
Q  1 ccaatcgaatggtggttcagcagtttctcttgtggacaccaactagcaattaggcctctatctg 64  Q
    ||||||||| ||||||| | || ||| ||||||||||||||||| || ||||| ||||||||||    
T  24103327 ccaatcgaagggtggtttaacactttatcttgtggacaccaacttgctattagtcctctatctg 24103390  T

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Target: scaffold0475 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 2292 - 2382
Alignment:
Q  82 aaagcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtggtttt 172  Q
    |||||||||||||||||| || ||| ||||||| |  | || ||||||||| |||||| ||||| ||||| ||||||| ||||||||||||    
T  2292 aaagcctctaaggtgaagaagctttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggtttt 2382  T

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Target: scaffold0288 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 175
Target Start/End: Complemental strand, 2111 - 2018
Alignment:
Q  82 aaagcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtggttttctg 175  Q
    |||||||||||||||||| || ||| ||||||| | || || ||||||||| |||||| ||||| ||||| ||| |||  ||||||||||||||    
T  2111 aaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggttttctg 2018  T

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Target: scaffold0477 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 4490 - 4427
Alignment:
Q  1 ccaatcgaatggtggttcagcagtttctcttgtggacaccaactagcaattaggcctctatctg 64  Q
    ||||| ||| |||||||||| | || ||||||||||||||| || |||||||||||||||||||    
T  4490 ccaattgaagggtggttcagtacttgctcttgtggacaccagctcgcaattaggcctctatctg 4427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 3088213 - 3088299
Alignment:
Q  82 aaagcctctaaggtgaagtagttttcctagtttcagcattgcattgatatgaccttgagctggaaatggagtcaacactgcatgtgg 168  Q
    ||||||| |||||||||| |||||| ||||||| | || || ||| ||||||||||||  |||| ||||| ||||||| ||||||||    
T  3088213 aaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtgg 3088299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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