View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9948_low_1 (Length: 583)

Name: NF9948_low_1
Description: NF9948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9948_low_1
NF9948_low_1
[»] chr8 (10 HSPs)
chr8 (244-566)||(37562293-37562624)
chr8 (273-385)||(13934962-13935074)
chr8 (246-309)||(40450971-40451034)
chr8 (246-312)||(27322569-27322635)
chr8 (244-294)||(35840530-35840580)
chr8 (321-349)||(1487662-1487690)
chr8 (246-294)||(35943076-35943124)
chr8 (246-294)||(35943839-35943887)
chr8 (337-385)||(37562969-37563017)
chr8 (273-309)||(43972071-43972107)
[»] chr3 (13 HSPs)
chr3 (246-562)||(51421398-51421723)
chr3 (244-385)||(51420859-51421000)
chr3 (319-392)||(49287770-49287845)
chr3 (319-392)||(49288565-49288640)
chr3 (246-308)||(8652810-8652872)
chr3 (246-308)||(8653706-8653768)
chr3 (246-294)||(33455781-33455829)
chr3 (246-294)||(49161808-49161856)
chr3 (246-292)||(33968181-33968227)
chr3 (251-308)||(45501280-45501337)
chr3 (246-294)||(33454866-33454914)
chr3 (273-309)||(44406944-44406980)
chr3 (246-318)||(45297549-45297621)
[»] chr1 (12 HSPs)
chr1 (246-562)||(38931314-38931639)
chr1 (253-385)||(38932037-38932169)
chr1 (246-294)||(48835097-48835145)
chr1 (246-309)||(4640528-4640591)
chr1 (246-308)||(4641748-4641810)
chr1 (273-309)||(31788261-31788297)
chr1 (506-558)||(52747018-52747070)
chr1 (246-292)||(2687729-2687775)
chr1 (246-294)||(41884229-41884277)
chr1 (253-309)||(11031438-11031494)
chr1 (265-309)||(27418182-27418226)
chr1 (273-309)||(29334241-29334277)
[»] chr5 (12 HSPs)
chr5 (13-245)||(38690332-38690563)
chr5 (247-294)||(4789521-4789568)
chr5 (87-162)||(38703302-38703371)
chr5 (326-375)||(32944403-32944452)
chr5 (273-309)||(6804818-6804854)
chr5 (247-307)||(26712375-26712435)
chr5 (247-307)||(26982113-26982173)
chr5 (244-309)||(35262450-35262515)
chr5 (281-349)||(325470-325538)
chr5 (246-294)||(6804891-6804939)
chr5 (314-346)||(38064839-38064871)
chr5 (246-294)||(42650757-42650805)
[»] chr2 (11 HSPs)
chr2 (319-392)||(4386098-4386173)
chr2 (246-309)||(36390957-36391020)
chr2 (246-306)||(7868129-7868189)
chr2 (251-312)||(36391654-36391715)
chr2 (246-293)||(23876064-23876111)
chr2 (246-309)||(34617653-34617716)
chr2 (273-309)||(41768728-41768764)
chr2 (273-309)||(4976490-4976526)
chr2 (273-309)||(4994397-4994433)
chr2 (253-293)||(5005469-5005509)
chr2 (246-294)||(6084871-6084919)
[»] chr4 (9 HSPs)
chr4 (246-375)||(33370794-33370923)
chr4 (246-309)||(232034-232097)
chr4 (319-388)||(43079243-43079311)
chr4 (246-294)||(25970106-25970154)
chr4 (246-308)||(23383310-23383372)
chr4 (246-294)||(34154794-34154842)
chr4 (271-309)||(6246809-6246847)
chr4 (246-312)||(39429919-39429985)
chr4 (336-381)||(52090158-52090203)
[»] chr7 (13 HSPs)
chr7 (246-294)||(29060739-29060787)
chr7 (246-294)||(42607081-42607129)
chr7 (244-375)||(32548590-32548723)
chr7 (319-392)||(35771151-35771224)
chr7 (246-294)||(24995852-24995900)
chr7 (246-309)||(12732247-12732310)
chr7 (319-379)||(35770357-35770419)
chr7 (252-294)||(24996683-24996725)
chr7 (314-346)||(8464465-8464497)
chr7 (273-309)||(30915761-30915797)
chr7 (246-294)||(32871140-32871188)
chr7 (246-294)||(40320410-40320458)
chr7 (246-294)||(42607812-42607860)
[»] scaffold0129 (1 HSPs)
scaffold0129 (246-312)||(43200-43266)
[»] scaffold2003 (1 HSPs)
scaffold2003 (246-306)||(519-579)
[»] chr6 (1 HSPs)
chr6 (246-307)||(29290123-29290184)
[»] scaffold0189 (1 HSPs)
scaffold0189 (273-309)||(12844-12880)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-144; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 244 - 566
Target Start/End: Original strand, 37562293 - 37562624
Alignment:
Q  244 acggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccattaaatctacaatcttatcatacactctcaacactat 343  Q
    |||||||||||||||||| |||| | ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37562293 acggtggggtttagcatgggaaaggagaattgtttcccaccataggaaagtcaattttaaccattagatctacaatcttatcatacactctcaacactat 37562392  T
Q  344 atttttatcactatcttccactaccatctctctccttcatccccaccaatcca---------acactatgagaactatagtttttaccaatcaaattcaa 434  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||         |||| |||||||||||||||||||||||||| ||||||    
T  37562393 atttttgtcactatcttccactaccatctctctccttcatccccaccaacccaccaccagcaacaccatgagaactatagtttttaccaatcagattcaa 37562492  T
Q  435 aattttaacaatcaatattgcatgaacttactttttgcaattcaaagtaatcaatccttgcaggacactatataggaacaaattgtttgatttgagcaaa 534  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37562493 aattttaacaatcaatattccatgaacttactttttgcaattcaaagtaatcaatccttgcaggacactatataggaacaaattgtttgatttgagcaaa 37562592  T
Q  535 atatattctcaacctctggctgacggaagagt 566  Q
    ||||||||||||||||||||||||||||||||    
T  37562593 atatattctcaacctctggctgacggaagagt 37562624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 273 - 385
Target Start/End: Complemental strand, 13935074 - 13934962
Alignment:
Q  273 ttgtttcccaccatgggaaagtcaattttaaccattaaatctacaatcttatcatacactctcaacactatatttttatcactatcttccactaccatct 372  Q
    |||||| ||||||| ||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13935074 ttgttttccaccataggaaagtcacttttaaccattagatctacaatcttgtcatacactctcaacactatatttttgtcactatcttccactaccatct 13934975  T
Q  373 ctctccttcatcc 385  Q
    || || |||||||    
T  13934974 ctttcattcatcc 13934962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 40451034 - 40450971
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccatta 309  Q
    |||||||||||| ||| |||| |  | |||||||||||||||||||||| ||||||||||||||    
T  40451034 ggtggggtttagtatgggaaatgtaagttgtttcccaccatgggaaagtaaattttaaccatta 40450971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 27322635 - 27322569
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccattaaat 312  Q
    |||||||||||| ||| |||| |||| ||||||||||| |||||||||| | | || ||||||||||    
T  27322635 ggtggggtttaggatgggaaatgggagttgtttcccacgatgggaaagttattcttgaccattaaat 27322569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 35840580 - 35840530
Alignment:
Q  244 acggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagt 294  Q
    |||||||||||||||||| |||| || | ||||||||||| ||||||||||    
T  35840580 acggtggggtttagcatgggaaagggaagttgtttcccacgatgggaaagt 35840530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 349
Target Start/End: Original strand, 1487662 - 1487690
Alignment:
Q  321 ttatcatacactctcaacactatattttt 349  Q
    |||||||||||||||||||||||||||||    
T  1487662 ttatcatacactctcaacactatattttt 1487690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 35943076 - 35943124
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagt 294  Q
    |||||||||||||||| |||| || | ||||||||||||||||| ||||    
T  35943076 ggtggggtttagcatgggaaagggaagttgtttcccaccatggggaagt 35943124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 35943887 - 35943839
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagt 294  Q
    |||||||||||||||| |||| | |||||||||||||| |||| |||||    
T  35943887 ggtggggtttagcatgggaaaggagaattgtttcccactatggaaaagt 35943839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 385
Target Start/End: Complemental strand, 37563017 - 37562969
Alignment:
Q  337 acactatatttttatcactatcttccactaccatctctctccttcatcc 385  Q
    ||||||||||||| ||||||||||||  |||||||||| || |||||||    
T  37563017 acactatatttttgtcactatcttccgataccatctctttcattcatcc 37562969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 43972107 - 43972071
Alignment:
Q  273 ttgtttcccaccatgggaaagtcaattttaaccatta 309  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  43972107 ttgtttcccactatgggaaagttaattttaaccatta 43972071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 246 - 562
Target Start/End: Complemental strand, 51421723 - 51421398
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccattaaatctacaatcttatcatacactctcaacactatat 345  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  51421723 ggtggggtttagcatgagaaaggggaattgtttcccaccatgggaaagtcaatttgaaccattaaatctacaatcttatcatacactctcaacactatat 51421624  T
Q  346 ttttatcactatcttccactaccatctctctccttcatccccaccaatcca---------acactatgagaactatagtttttaccaatcaaattcaaaa 436  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||         |||| |||||||||||||||||||||||||| ||||||||    
T  51421623 ttttgtcactatcttccactaccatctctctccttcatccccaccaacccaccaccagcaacaccatgagaactatagtttttaccaatcagattcaaaa 51421524  T
Q  437 ttttaacaatcaatattgcatgaacttactttttgcaattcaaagtaatcaatccttgcaggacactatataggaacaaattgtttgatttgagcaaaat 536  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  51421523 ttttaacaatcaatattccatgaacttactttttgcaattcaaagtaatcaatccttgcaggacactatataggaacaaattgtttgatttgaggaaaat 51421424  T
Q  537 atattctcaacctctggctgacggaa 562  Q
    ||||||||||||||||||||||||||    
T  51421423 atattctcaacctctggctgacggaa 51421398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 244 - 385
Target Start/End: Original strand, 51420859 - 51421000
Alignment:
Q  244 acggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccattaaatctacaatcttatcatacactctcaacactat 343  Q
    |||||||  ||||||||| ||||||| | |||||| ||||||| ||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||    
T  51420859 acggtggcatttagcatgggaaaaggaagttgttttccaccataggaaagtcatttttaaccattagatctacaatcttgtcatacactctcaacactat 51420958  T
Q  344 atttttatcactatcttccactaccatctctctccttcatcc 385  Q
    |||||| |||||||||||||||||||||||| || |||||||    
T  51420959 atttttgtcactatcttccactaccatctctttcattcatcc 51421000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 319 - 392
Target Start/End: Original strand, 49287770 - 49287845
Alignment:
Q  319 tcttatcatacactctcaacactatatttttat--cactatcttccactaccatctctctccttcatccccaccaa 392  Q
    |||||||||||||||||||||| | |||||| |  ||||||||||||| |||||| |||||||||||||| |||||    
T  49287770 tcttatcatacactctcaacaccaaatttttttgtcactatcttccacaaccatcactctccttcatccctaccaa 49287845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 319 - 392
Target Start/End: Complemental strand, 49288640 - 49288565
Alignment:
Q  319 tcttatcatacactctcaacactata--tttttatcactatcttccactaccatctctctccttcatccccaccaa 392  Q
    ||||||||||||||||||||||   |  |||||||||||||||||||| |||||| |||||||||||| |||||||    
T  49288640 tcttatcatacactctcaacaccggaattttttatcactatcttccacaaccatcactctccttcatctccaccaa 49288565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 8652810 - 8652872
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccatt 308  Q
    |||||||||||||||| |||| |||||| | |||||||||||||||||| |||||| ||||||    
T  8652810 ggtggggtttagcatgggaaaggggaatcggttcccaccatgggaaagtaaattttcaccatt 8652872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 8653768 - 8653706
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccatt 308  Q
    ||||||||||||||||  ||| ||| |||||||||||||||| |||||| |||||||||||||    
T  8653768 ggtggggtttagcatggaaaagggggattgtttcccaccatgagaaagtaaattttaaccatt 8653706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 33455829 - 33455781
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagt 294  Q
    |||||||||||||||| |||| ||||||||||||||||||| |||||||    
T  33455829 ggtggggtttagcatgggaaaggggaattgtttcccaccataggaaagt 33455781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 49161856 - 49161808
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagt 294  Q
    |||| ||||||||||| |||| |||||||||||||||||||||||||||    
T  49161856 ggtgaggtttagcatgggaaaggggaattgtttcccaccatgggaaagt 49161808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 33968181 - 33968227
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaa 292  Q
    |||||||||||||||| |||| || | ||||||||||||||||||||    
T  33968181 ggtggggtttagcatgggaaagggaacttgtttcccaccatgggaaa 33968227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 45501337 - 45501280
Alignment:
Q  251 ggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccatt 308  Q
    ||||||| ||| |||| |||| |||||| ||||||||||||||| ||||| |||||||    
T  45501337 ggtttagtatgggaaaggggagttgttttccaccatgggaaagtaaatttaaaccatt 45501280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 33454866 - 33454914
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagt 294  Q
    |||||||||||||||| |||| |  ||||||||||||||||| ||||||    
T  33454866 ggtggggtttagcatgggaaaggaaaattgtttcccaccatgagaaagt 33454914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 44406980 - 44406944
Alignment:
Q  273 ttgtttcccaccatgggaaagtcaattttaaccatta 309  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  44406980 ttgtttcccaccatgggaaagtaaattttacccatta 44406944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 45297549 - 45297621
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccattaaatctacaa 318  Q
    |||||||||||| ||| |||| | || |||||||||| |||||||||||   |||||||||||| ||| ||||    
T  45297549 ggtggggtttagtatgggaaaggagagttgtttcccatcatgggaaagttttttttaaccattagatcaacaa 45297621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 246 - 562
Target Start/End: Original strand, 38931314 - 38931639
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccattaaatctacaatcttatcatacactctcaacactatat 345  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  38931314 ggtggggtttagcatgagaaaggggaattgtttcccaccatgggaaagtcaatttgaaccattagatctacaatcttatcatacactctcaacactatat 38931413  T
Q  346 ttttatcactatcttccactaccatctctctccttcatccccaccaatcca---------acactatgagaactatagtttttaccaatcaaattcaaaa 436  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||         |||| |||||||||||||||||||||||||| ||||||||    
T  38931414 ttttgtcactatcttccactaccatctctctccttcatccccaccaacccaccaccagcaacaccatgagaactatagtttttaccaatcagattcaaaa 38931513  T
Q  437 ttttaacaatcaatattgcatgaacttactttttgcaattcaaagtaatcaatccttgcaggacactatataggaacaaattgtttgatttgagcaaaat 536  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38931514 ttttaacaatcaatattccatgaacttactttttgcaattcaaagtaatcaatccttgcaggacactatataggaacaaattgtttgatttgaggaaaat 38931613  T
Q  537 atattctcaacctctggctgacggaa 562  Q
    ||||||||||||||||||||||||||    
T  38931614 atattctcaacctctggctgacggaa 38931639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 253 - 385
Target Start/End: Complemental strand, 38932169 - 38932037
Alignment:
Q  253 tttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccattaaatctacaatcttatcatacactctcaacactatatttttatc 352  Q
    ||||||||| ||||||| | |||||| ||||||| ||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||| ||    
T  38932169 tttagcatgggaaaaggaagttgttttccaccataggaaagtcatttttaaccattagatctacaatcttgtcatacactctcaacactatatttttgtc 38932070  T
Q  353 actatcttccactaccatctctctccttcatcc 385  Q
    |||||||||||||||||||||| || |||||||    
T  38932069 actatcttccactaccatctctttcattcatcc 38932037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 48835145 - 48835097
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagt 294  Q
    |||||||||||||||| |||| ||||||||||| |||||||||||||||    
T  48835145 ggtggggtttagcatgggaaaggggaattgttttccaccatgggaaagt 48835097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 4640528 - 4640591
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccatta 309  Q
    ||||| ||||||||||  ||| ||||||||||||||||||||||||||| | ||| ||||||||    
T  4640528 ggtggagtttagcatggtaaaggggaattgtttcccaccatgggaaagtaattttcaaccatta 4640591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 4641810 - 4641748
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccatt 308  Q
    ||||| |||||||||| |||| |||||||||||||||||| |||||||| | ||| |||||||    
T  4641810 ggtggagtttagcatgggaaaggggaattgtttcccaccaagggaaagtaattttcaaccatt 4641748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 31788297 - 31788261
Alignment:
Q  273 ttgtttcccaccatgggaaagtcaattttaaccatta 309  Q
    |||||||||||||||||||||| ||||||||||||||    
T  31788297 ttgtttcccaccatgggaaagttaattttaaccatta 31788261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 506 - 558
Target Start/End: Original strand, 52747018 - 52747070
Alignment:
Q  506 ataggaacaaattgtttgatttgagcaaaatatattctcaacctctggctgac 558  Q
    |||||||||| |||||||||||||| |||| ||||| |||||||||| |||||    
T  52747018 ataggaacaatttgtttgatttgaggaaaagatattttcaacctctgactgac 52747070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 2687775 - 2687729
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaa 292  Q
    |||||||||||||||| |||| |  ||||||||||||||||||||||    
T  2687775 ggtggggtttagcatgggaaaggataattgtttcccaccatgggaaa 2687729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 41884277 - 41884229
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaa-ttgtttcccaccatgggaaagt 294  Q
    |||||||||||||||| |||||||||| |||||||||||||| |||||||    
T  41884277 ggtggggtttagcatg-gaaaagggaaattgtttcccaccataggaaagt 41884229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 11031438 - 11031494
Alignment:
Q  253 tttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccatta 309  Q
    |||| |||| |||| |||||| |||||||||||||||||||| || ||| |||||||    
T  11031438 tttaacatgggaaaggggaatagtttcccaccatgggaaagttaaatttgaccatta 11031494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 27418182 - 27418226
Alignment:
Q  265 aaagggaattgtttcccaccatgggaaagtcaattttaaccatta 309  Q
    |||||||||||||||||||||||  ||||| | ||||||||||||    
T  27418182 aaagggaattgtttcccaccatgaaaaagtaatttttaaccatta 27418226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 29334241 - 29334277
Alignment:
Q  273 ttgtttcccaccatgggaaagtcaattttaaccatta 309  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  29334241 ttgtttcccaccatgggaaagtaaattttacccatta 29334277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 38690332 - 38690563
Alignment:
Q  13 atggacatcacaagacatgtgcttctgcacccactcca---ttccatgagtcaatataatacattttccattttctgatatgactaaagtcttcatcaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38690332 atggacatcacaagacatgtgcttctgcacccactccaatattccatgagtcaatataatgcattttccattttctgatatgactaaagtcttcatcaaa 38690431  T
Q  110 tttacaaactacnnnnnnnntaaattaaacctgctttctttccttttgagtatannnnnnnnattcatgcaaaacaatcacgtgatcacatgcatggctt 209  Q
    ||||||||||||         ||||||||||||||||||||||||||||||||         |||||||||||||||||||||| |||||||||||||||    
T  38690432 tttacaaactacaaaaa----aaattaaacctgctttctttccttttgagtattttttttttattcatgcaaaacaatcacgtggtcacatgcatggctt 38690527  T
Q  210 tgttcaaacaacctctatcaatgagaggattgggac 245  Q
    ||||||||||||||||||||||||||||||||||||    
T  38690528 tgttcaaacaacctctatcaatgagaggattgggac 38690563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 4789521 - 4789568
Alignment:
Q  247 gtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagt 294  Q
    ||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  4789521 gtggggtttagcatgggaaaggggagttgtttcccaccatgggaaagt 4789568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 38703302 - 38703371
Alignment:
Q  87 atatgactaaagtcttcatcaaatttacaaactacnnnnnnnntaaattaaacctgctttctttccttttgagtat 162  Q
    ||||||||||||| |||||||||||||||||| ||         ||||||||||||||||||||||||||||||||    
T  38703302 atatgactaaagttttcatcaaatttacaaaccaccaa------aaattaaacctgctttctttccttttgagtat 38703371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 32944452 - 32944403
Alignment:
Q  326 atacactctcaacactatatttttatcactatcttccactaccatctctc 375  Q
    |||||| |||||||||| ||| || |||||||||||||||||||||||||    
T  32944452 atacaccctcaacactagattattgtcactatcttccactaccatctctc 32944403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 6804854 - 6804818
Alignment:
Q  273 ttgtttcccaccatgggaaagtcaattttaaccatta 309  Q
    ||||||||||||||||||||||||||||| |||||||    
T  6804854 ttgtttcccaccatgggaaagtcaattttgaccatta 6804818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 26712435 - 26712375
Alignment:
Q  247 gtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccat 307  Q
    |||| |||||||||| |||| || | |||||||||||||||||||||  ||||||||||||    
T  26712435 gtggagtttagcatgggaaagggaagttgtttcccaccatgggaaagctaattttaaccat 26712375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 26982173 - 26982113
Alignment:
Q  247 gtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccat 307  Q
    |||| |||||||||| |||| || | |||||||||||||||||||||  ||||||||||||    
T  26982173 gtggagtttagcatgggaaagggaagttgtttcccaccatgggaaagctaattttaaccat 26982113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 35262450 - 35262515
Alignment:
Q  244 acggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccatta 309  Q
    ||||||| |||||||||| |||| |  |||||||||| ||||||||||||| | |||| |||||||    
T  35262450 acggtggagtttagcatgggaaaggataattgtttcctaccatgggaaagttatttttgaccatta 35262515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 281 - 349
Target Start/End: Original strand, 325470 - 325538
Alignment:
Q  281 caccatgggaaagtcaattttaaccattaaatctacaatcttatcatacactctcaacactatattttt 349  Q
    ||||||| |||||| |||||||||||||| || ||  |||||||||||| ||||  | |||||||||||    
T  325470 caccatgagaaagtaaattttaaccattagatttaagatcttatcatactctcttcatactatattttt 325538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 6804891 - 6804939
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagt 294  Q
    |||||||||||||||| ||||  ||| |||||||||||||||| |||||    
T  6804891 ggtggggtttagcatgggaaagaggagttgtttcccaccatggaaaagt 6804939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 38064871 - 38064839
Alignment:
Q  314 tacaatcttatcatacactctcaacactatatt 346  Q
    |||||||||||||||||||| ||||||||||||    
T  38064871 tacaatcttatcatacactcccaacactatatt 38064839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 42650757 - 42650805
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagt 294  Q
    |||| ||||||||||| |||| |||||||||||  ||||||||||||||    
T  42650757 ggtgaggtttagcatgggaaaggggaattgtttttcaccatgggaaagt 42650805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 319 - 392
Target Start/End: Complemental strand, 4386173 - 4386098
Alignment:
Q  319 tcttatcatacactctcaacactata--tttttatcactatcttccactaccatctctctccttcatccccaccaa 392  Q
    |||||||||||||||||||||||| |  ||||| |||||||||||||| |||||| ||||||||||||||||||||    
T  4386173 tcttatcatacactctcaacactagaattttttgtcactatcttccacaaccatcactctccttcatccccaccaa 4386098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 36390957 - 36391020
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccatta 309  Q
    |||||||||||||||| |||| || | |||||||||||||||||||||| ||||||||||||||    
T  36390957 ggtggggtttagcatgggaaagggaagttgtttcccaccatgggaaagtaaattttaaccatta 36391020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 7868189 - 7868129
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaacca 306  Q
    |||||| ||||||||| |||| |||| |||||||||||||||||||||| |||||||||||    
T  7868189 ggtgggatttagcatgagaaaggggagttgtttcccaccatgggaaagtaaattttaacca 7868129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 312
Target Start/End: Complemental strand, 36391715 - 36391654
Alignment:
Q  251 ggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccattaaat 312  Q
    ||||||| ||| |||| |||| |||||| ||||||||||||||| |||||||||||||||||    
T  36391715 ggtttagtatgggaaaggggagttgttttccaccatgggaaagtaaattttaaccattaaat 36391654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 23876111 - 23876064
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaag 293  Q
    |||||||||||||||| |||| |||| |||||||||||||||||||||    
T  23876111 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 23876064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 34617653 - 34617716
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccatta 309  Q
    |||||||||||||||| |||| |  |||||||||||||||||||||||| | |||| |||||||    
T  34617653 ggtggggtttagcatgggaaaggataattgtttcccaccatgggaaagttatttttgaccatta 34617716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 41768764 - 41768728
Alignment:
Q  273 ttgtttcccaccatgggaaagtcaattttaaccatta 309  Q
    ||||||||||||||||||||||||||||| |||||||    
T  41768764 ttgtttcccaccatgggaaagtcaattttgaccatta 41768728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 4976526 - 4976490
Alignment:
Q  273 ttgtttcccaccatgggaaagtcaattttaaccatta 309  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  4976526 ttgtttcccactatgggaaagttaattttaaccatta 4976490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 4994433 - 4994397
Alignment:
Q  273 ttgtttcccaccatgggaaagtcaattttaaccatta 309  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  4994433 ttgtttcccactatgggaaagttaattttaaccatta 4994397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 5005469 - 5005509
Alignment:
Q  253 tttagcatgtgaaaagggaattgtttcccaccatgggaaag 293  Q
    ||||||||| |||| ||||||||||||||| ||||||||||    
T  5005469 tttagcatgggaaaggggaattgtttcccatcatgggaaag 5005509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 6084871 - 6084919
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagt 294  Q
    |||| |||||| |||| |||| ||||||||||||||| |||||||||||    
T  6084871 ggtgaggtttaacatgggaaaggggaattgtttcccatcatgggaaagt 6084919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 246 - 375
Target Start/End: Complemental strand, 33370923 - 33370794
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccattaaatctacaatcttatcatacactctcaacactatat 345  Q
    |||||||||||||||| |||| |  | |||||||||||||||||||||| ||| ||| |||||| ||| |  |    || |||||| |||||||||| ||    
T  33370923 ggtggggtttagcatgggaaaggatacttgtttcccaccatgggaaagttaatgttagccattagatcaagtagagaattatacaccctcaacactagat 33370824  T
Q  346 ttttatcactatcttccactaccatctctc 375  Q
    | || |||||||||||||||||||||||||    
T  33370823 tattgtcactatcttccactaccatctctc 33370794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 232097 - 232034
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccatta 309  Q
    |||||||||||| ||| |||| || | |||||||||||||||||||||| ||||||||||||||    
T  232097 ggtggggtttagtatgggaaagggaagttgtttcccaccatgggaaagtaaattttaaccatta 232034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 388
Target Start/End: Original strand, 43079243 - 43079311
Alignment:
Q  319 tcttatcatacactctcaacactatatttttatcactatcttccactaccatctctctccttcatcccca 388  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||  | ||||||||||| |||||||||    
T  43079243 tcttatcatgcactctcaacactata-ttttatcgctatcttccatcatcatctctctccctcatcccca 43079311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 25970106 - 25970154
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagt 294  Q
    |||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  25970106 ggtggggtttagcatgggaaaggggagttgtttcccaccatgggaaagt 25970154  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 23383310 - 23383372
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccatt 308  Q
    |||||||||||| ||| |||| | || |||||||||||||||||||||| ||||||| |||||    
T  23383310 ggtggggtttagaatgagaaaggagagttgtttcccaccatgggaaagttaattttatccatt 23383372  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 34154794 - 34154842
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagt 294  Q
    |||||||||||||||| ||||||  | ||||||||||||||||||||||    
T  34154794 ggtggggtttagcatgggaaaagaaacttgtttcccaccatgggaaagt 34154842  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 309
Target Start/End: Original strand, 6246809 - 6246847
Alignment:
Q  271 aattgtttcccaccatgggaaagtcaattttaaccatta 309  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  6246809 aattgtttcccaccatgggaaagttaattttgaccatta 6246847  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 39429985 - 39429919
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccattaaat 312  Q
    |||||||||||||||| |||  | || ||||||||||||||||||||||   ||| |||||||||||    
T  39429985 ggtggggtttagcatgggaatggagagttgtttcccaccatgggaaagtttttttcaaccattaaat 39429919  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 52090203 - 52090158
Alignment:
Q  336 aacactatatttttatcactatcttccactaccatctctctccttc 381  Q
    |||| |||||||||  ||||||||||||| ||||||||||||||||    
T  52090203 aacattatattttttccactatcttccaccaccatctctctccttc 52090158  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 29060787 - 29060739
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagt 294  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||    
T  29060787 ggtggggtttagcatgggaaaggggaattgtttcccaccatgggaaagt 29060739  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 42607081 - 42607129
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagt 294  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||    
T  42607081 ggtggggtttagcatgggaaaggggaattgtttcccaccatgggaaagt 42607129  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 375
Target Start/End: Complemental strand, 32548723 - 32548590
Alignment:
Q  244 acggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccattaaatctacaatcttatcatacactctcaacactat 343  Q
    |||||||||||||| ||| |||| |  | |||||||||||||||||||||| ||| ||| |||||| ||| |  |    |  |||||| ||||||| |||    
T  32548723 acggtggggtttagtatgggaaatgatacttgtttcccaccatgggaaagttaatgttagccattagatcaagtagagaactatacaccctcaacattat 32548624  T
Q  344 at--ttttatcactatcttccactaccatctctc 375  Q
    ||  |||| |||||||||||||||||||||||||    
T  32548623 attattttgtcactatcttccactaccatctctc 32548590  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 319 - 392
Target Start/End: Complemental strand, 35771224 - 35771151
Alignment:
Q  319 tcttatcatacactctcaacactata--tttttatcactatcttccactaccatctctctccttcatccccaccaa 392  Q
    |||||| ||||||||||||||| |||  ||||| |||||||  ||||| |||||| ||||||||||||||||||||    
T  35771224 tcttattatacactctcaacaccataattttttgtcactat--tccacaaccatcactctccttcatccccaccaa 35771151  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 24995852 - 24995900
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagt 294  Q
    |||||||||||| ||| |||| |||| ||||||||||||||||||||||    
T  24995852 ggtggggtttagaatgggaaaggggagttgtttcccaccatgggaaagt 24995900  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 12732247 - 12732310
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccatta 309  Q
    |||||||||||||||| |||| || ||  |||||||||||||||||||| ||| || |||||||    
T  12732247 ggtggggtttagcatgggaaagggaaagagtttcccaccatgggaaagtaaatattgaccatta 12732310  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 35770357 - 35770419
Alignment:
Q  319 tcttatcatacactctcaacactata--tttttatcactatcttccactaccatctctctcct 379  Q
    |||||||||||||||||||||| | |  ||||| |||||||||||||| |||||| |||||||    
T  35770357 tcttatcatacactctcaacaccagaattttttgtcactatcttccacaaccatcactctcct 35770419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 24996725 - 24996683
Alignment:
Q  252 gtttagcatgtgaaaagggaattgtttcccaccatgggaaagt 294  Q
    |||||||||| |||| |||| ||||||||||||||||||||||    
T  24996725 gtttagcatgggaaaggggagttgtttcccaccatgggaaagt 24996683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 8464465 - 8464497
Alignment:
Q  314 tacaatcttatcatacactctcaacactatatt 346  Q
    |||||||||||||||||||| ||||||||||||    
T  8464465 tacaatcttatcatacactcccaacactatatt 8464497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 30915761 - 30915797
Alignment:
Q  273 ttgtttcccaccatgggaaagtcaattttaaccatta 309  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  30915761 ttgtttcccaccatgggaaagtaaattttacccatta 30915797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 32871188 - 32871140
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagt 294  Q
    |||||||||||||||| |||  |||| |||||||||||||| |||||||    
T  32871188 ggtggggtttagcatgggaatggggagttgtttcccaccataggaaagt 32871140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 40320458 - 40320410
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagt 294  Q
    |||||||||||||||| |||| | || |||||||||||||||| |||||    
T  40320458 ggtggggtttagcatgggaaaggagagttgtttcccaccatggaaaagt 40320410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 42607860 - 42607812
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagt 294  Q
    ||||||||||||||||  ||| ||||||||||||||| ||| |||||||    
T  42607860 ggtggggtttagcatggaaaaggggaattgtttcccatcataggaaagt 42607812  T

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Target: scaffold0129 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 43266 - 43200
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaaccattaaat 312  Q
    |||||||||||| |||  ||| |||| |||||||||| ||||||||||| ||| |||||||||||||    
T  43266 ggtggggtttagtatggaaaaggggagttgtttcccatcatgggaaagtaaatcttaaccattaaat 43200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2003 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 579 - 519
Alignment:
Q  246 ggtggggtttagcatgtgaaaagggaattgtttcccaccatgggaaagtcaattttaacca 306  Q
    |||||| || |||||| |||| |||| |||||||||||||||| ||||| |||||||||||    
T  579 ggtgggattaagcatgggaaaggggagttgtttcccaccatggaaaagtaaattttaacca 519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 29290123 - 29290184
Alignment:
Q  246 ggtggggtttagcatgtgaaaagg-gaattgtttcccaccatgggaaagtcaattttaaccat 307  Q
    |||||||||||||||| |||| || || |||||||||||||||||||||| ||| ||||||||    
T  29290123 ggtggggtttagcatg-gaaatggagagttgtttcccaccatgggaaagttaatgttaaccat 29290184  T

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Target: scaffold0189 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 12880 - 12844
Alignment:
Q  273 ttgtttcccaccatgggaaagtcaattttaaccatta 309  Q
    |||||||||||||||||||||| |||||| |||||||    
T  12880 ttgtttcccaccatgggaaagttaattttgaccatta 12844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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