View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9948_low_2 (Length: 322)

Name: NF9948_low_2
Description: NF9948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9948_low_2
NF9948_low_2
[»] chr1 (3 HSPs)
chr1 (1-185)||(38928862-38929055)
chr1 (184-300)||(38929331-38929446)
chr1 (45-112)||(36366169-36366236)
[»] chr3 (1 HSPs)
chr3 (45-93)||(23035492-23035540)


Alignment Details
Target: chr1 (Bit Score: 146; Significance: 7e-77; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 38928862 - 38929055
Alignment:
Q  1 cgatcgaacaatcaaacatacacaattatgccctcaactcag---------ccagatattagctagctaagtccagaacatgtatgaagacttattctct 91  Q
    ||||||| ||||||| ||||||||||||||||||||||||||         ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  38928862 cgatcgagcaatcaaccatacacaattatgccctcaactcagccatatcagccagatattagctagttaagtccagaacatgtatgaagatttattctct 38928961  T
Q  92 taataataaggcgatgaaggatgtggatgctgatatggaagtttataatttagtcgacaaggcagctttgggttgtaacttagcctacaagata 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38928962 taataataaggcgatgaaggatgtggatgctgatatggaagtttataatttagtcgacaaggcagctttgggttgtaacttagcctacaagata 38929055  T

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Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 38929331 - 38929446
Alignment:
Q  184 tagtaacttacaccccctataatatttgcgaacaaccgaaaaatactttgattttaaatgacatcggataacttgtaaggacaannnnnnnnaatggcaa 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  38929331 tagtaacttacaccccctataatatttgcgaacaaccgaaaaatactttgattttaaatgacatcggataacttgtaaggacaa-tttttttaatggcaa 38929429  T
Q  284 tagatgatataattaag 300  Q
    |||||||||||||||||    
T  38929430 tagatgatataattaag 38929446  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 36366236 - 36366169
Alignment:
Q  45 agatattagctagctaagtccagaacatgtatgaagacttattctcttaataataaggcgatgaagga 112  Q
    |||||| ||||  |||||||||||||||| ||||||| | |||| ||||||||||||| ||| |||||    
T  36366236 agatatcagctgtctaagtccagaacatgcatgaagattcattcccttaataataaggtgataaagga 36366169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 23035540 - 23035492
Alignment:
Q  45 agatattagctagctaagtccagaacatgtatgaagacttattctctta 93  Q
    ||||||||| |  ||||||||||||||||  ||||||||||||||||||    
T  23035540 agatattagatgtctaagtccagaacatgcttgaagacttattctctta 23035492  T

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