View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9949_high_3 (Length: 207)

Name: NF9949_high_3
Description: NF9949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9949_high_3
NF9949_high_3
[»] chr2 (1 HSPs)
chr2 (70-207)||(8036553-8036690)
[»] chr4 (1 HSPs)
chr4 (70-183)||(4419188-4419299)
[»] chr1 (1 HSPs)
chr1 (70-195)||(34644478-34644602)
[»] chr3 (1 HSPs)
chr3 (101-197)||(52411993-52412087)
[»] chr7 (1 HSPs)
chr7 (70-154)||(40726551-40726633)
[»] chr5 (2 HSPs)
chr5 (71-154)||(25663104-25663185)
chr5 (138-194)||(34335251-34335307)


Alignment Details
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 70 - 207
Target Start/End: Original strand, 8036553 - 8036690
Alignment:
Q  70 ggcttcgtaacatcagaggttgctgatattttacatagggttcaaaggtttatgcatatatcaatgttatgtctcctagatccatagatattgtctttaa 169  Q
    |||||||||||||||||||||| |||  |||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||     
T  8036553 ggcttcgtaacatcagaggttgttgaccttttacatagagttcaaaggtttatgcatatatcaatgtcatgtctcctaggtccgtagatattgtctttac 8036652  T
Q  170 aatgattgtttttgtcaccaaaaaaggcatagcggcgc 207  Q
    |||||||| ||||||||   ||||| ||||||||||||    
T  8036653 aatgattgattttgtcattcaaaaaagcatagcggcgc 8036690  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 183
Target Start/End: Complemental strand, 4419299 - 4419188
Alignment:
Q  70 ggcttcgtaacatcagaggttgctgatattttacatagggttcaaaggtttatgcatatatcaatgttatgtctcctagatccatagatattgtctttaa 169  Q
    ||||||||| |||||||||||| |||  || ||||||| ||||||||| ||||||  ||| |||||||||||||||||| |||||  || |||| ||||     
T  4419299 ggcttcgtagcatcagaggttgttgaccttctacatagagttcaaagggttatgc--ataacaatgttatgtctcctaggtccatgaatgttgtgtttac 4419202  T
Q  170 aatgattgtttttg 183  Q
     ||||||| |||||    
T  4419201 gatgattggttttg 4419188  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 195
Target Start/End: Complemental strand, 34644602 - 34644478
Alignment:
Q  70 ggcttcgtaacatcagaggttgctgatattttacatagggttcaaaggtttatgcatatatcaatgttatgtctcctagatccatagatattgtctttaa 169  Q
    |||||| || |||||||||||| |||  || ||||||| || |||||| ||||||||||  |||||||||||||||||| |||||  || |||| ||||     
T  34644602 ggcttcctagcatcagaggttgttgaccttctacatagagtccaaagggttatgcatat--caatgttatgtctcctaggtccatgaatgttgtgtttac 34644505  T
Q  170 aatgattgtttttgtca-ccaaaaaag 195  Q
     ||||||| ||||| || |||||||||    
T  34644504 gatgattgattttgccatccaaaaaag 34644478  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 197
Target Start/End: Original strand, 52411993 - 52412087
Alignment:
Q  101 tacatagggttcaaaggtttatgcatatatcaatgttatgtctcctagatccatagatattgtctttaaaatgattgtttttgtcaccaaaaaaggc 197  Q
    ||||||| ||||||||| | |||||||   |||||| |||||||||||| ||||| ||||||| |||| |||||||| ||||| || | ||||||||    
T  52411993 tacatagagttcaaagggtcatgcataa--caatgtcatgtctcctagacccataaatattgtgtttacaatgattgattttgccatccaaaaaggc 52412087  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 40726551 - 40726633
Alignment:
Q  70 ggcttcgtaacatcagaggttgctgatattttacatagggttcaaaggtttatgcatatatcaatgttatgtctcctagatccat 154  Q
    |||||| || |||||||||||| |||  || ||||||| || |||||| ||||||  ||| ||||| ||||||||||||||||||    
T  40726551 ggcttcatagcatcagaggttgttgaccttctacatagagtccaaagggttatgc--ataacaatgctatgtctcctagatccat 40726633  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 25663104 - 25663185
Alignment:
Q  71 gcttcgtaacatcagaggttgctgatattttacatagggttcaaaggtttatgcatatatcaatgttatgtctcctagatccat 154  Q
    ||||| || ||||||| |||| |||| || ||||||| || |||||| ||||||||||  |||||||||||| ||||| |||||    
T  25663104 gcttcctagcatcagaagttgttgatcttctacatagagtccaaagggttatgcatat--caatgttatgtcccctaggtccat 25663185  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 34335307 - 34335251
Alignment:
Q  138 atgtctcctagatccatagatattgtctttaaaatgattgtttttgtcaccaaaaaa 194  Q
    |||||||||||| ||||| ||||||| ||||  ||||||| |||||||||| |||||    
T  34335307 atgtctcctagacccataaatattgtgtttacgatgattgattttgtcacctaaaaa 34335251  T

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