View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9949_low_2 (Length: 309)
Name: NF9949_low_2
Description: NF9949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9949_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 48222515 - 48222233
Alignment:
| Q |
8 |
ttggtggtggtgaagttttttatagtgagcttgcaagaagactgtctcaacatagagggaccaaaaaagtgtacttaacagctgcacctcaatgtccttt |
107 |
Q |
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| T |
48222515 |
ttggtggtggtgaagttttttatagtgagcttgcaagaagactgtctcaacatagagggaccaaaaaagtgtacttaacagctgcacctcaatgtccttt |
48222416 |
T |
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| Q |
108 |
tcctgatcaacatctcaaaggagcattatcaacaggactatttgactatgtttgggttcaattttacaacaatggtccttgtcaaattgaagctagtaac |
207 |
Q |
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| T |
48222415 |
tcctgatcaacatctcaaaggagcattatcaacaggactatttgactatgtttgggttcaattttacaacaatggtccttgtcaaattgaagctagtaac |
48222316 |
T |
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| Q |
208 |
ctcaacaagttccaaaaatcttggaatcaatgggtttcgactattaaggttagtaagatttatgttggagttcctgcctcacc |
290 |
Q |
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| T |
48222315 |
ctcaacaagttccaaaaatcttggaatcaatgggtttcgactattaaggttagtaagatttatgttggagttcctgcctcacc |
48222233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 47980378 - 47980419
Alignment:
| Q |
139 |
acaggactatttgactatgtttgggttcaattttacaacaat |
180 |
Q |
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| T |
47980378 |
acaggtctttttgactatgtttgggtgcaattttacaacaat |
47980419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 176
Target Start/End: Original strand, 8139403 - 8139437
Alignment:
| Q |
142 |
ggactatttgactatgtttgggttcaattttacaa |
176 |
Q |
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| T |
8139403 |
ggactttttgactatgtttgggttcaattttacaa |
8139437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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