View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9949_low_3 (Length: 250)
Name: NF9949_low_3
Description: NF9949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9949_low_3 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 10124432 - 10124193
Alignment:
| Q |
11 |
cagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10124432 |
cagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaaaccggtaattgctgagaagaaaaagaatatcaattg |
10124333 |
T |
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| Q |
111 |
gttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10124332 |
gttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaat |
10124233 |
T |
|
| Q |
211 |
agggttctttatttgacttatcttgaactttgcaaacaac |
250 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |
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| T |
10124232 |
agggttctttatttaacttatcttgaactttgcaaacaac |
10124193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 52 - 246
Target Start/End: Complemental strand, 28649992 - 28649798
Alignment:
| Q |
52 |
tgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagc |
151 |
Q |
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||||||| |||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| | |||||||||||||||||||| || | |
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| T |
28649992 |
tgcaatcgtgaaaacaatgtgaagccgataattgctgagaagaaaaagaatattaattggttgtttttgttgttgggacaaatgcttggttgttgcaatc |
28649893 |
T |
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| Q |
152 |
ttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgcc-aagaatagggttctttatttgacttatcttgaactttgcaaa |
246 |
Q |
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| T |
28649892 |
ttaaacaattgaagtatttttgcaagtataacaaccatcatagaa-caatgccaaaaaatagagttctttatttaacttatcttgaactatgcaaa |
28649798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 49 - 250
Target Start/End: Original strand, 21393062 - 21393263
Alignment:
| Q |
49 |
cattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgta |
148 |
Q |
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|||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| | |
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| T |
21393062 |
cattgcaatcaagaaaacagtgtgaaaccggtaattgccgagaagaaaaagaatatcaattggttgtttctattgctgggacaaatgctcggttgttgca |
21393161 |
T |
|
| Q |
149 |
agcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaatagggttctttatttgacttatcttgaactttgcaaaca |
248 |
Q |
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|||||||||||||||| |||||||||||||| || | |||||||||||||||||||||||||| |||||||||||||||||| ||||| | ||| |||| |
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| T |
21393162 |
agcttgaacaattgaagtatttttgcaagtacaacaatcatcatcgaaccggtgccaagaatagagttctttatttgacttattttgaattatgccaaca |
21393261 |
T |
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| Q |
249 |
ac |
250 |
Q |
| |
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|| |
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| T |
21393262 |
ac |
21393263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 21422334 - 21422564
Alignment:
| Q |
11 |
cagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattg |
110 |
Q |
| |
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|||||| ||||||| |||||| |||| || |||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |||| |
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| T |
21422334 |
cagagaatttgatgaatccaaaattgcctaaatgtgtgcattgcaatcaagaaaacagtgtcaagccaataattgctgagaagaaaaagaatatctattg |
21422433 |
T |
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| Q |
111 |
gttgtttctgttgct----aggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaa |
206 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| | |||||||| || |||||||| |
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| T |
21422434 |
gttgtttctgttgctggccgggacaaatgcttggttgttgcaagcttgaacatttgaagtatttttgcaagtataacaatcatcatcgcacaggtgccaa |
21422533 |
T |
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| Q |
207 |
gaatagggttctttatttgacttatcttgaa |
237 |
Q |
| |
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||||| |||||||||||||||||| ||||| |
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| T |
21422534 |
gaatacagttctttatttgacttattttgaa |
21422564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 1975279 - 1975176
Alignment:
| Q |
43 |
tgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggtt |
142 |
Q |
| |
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||||| |||||||||||| |||| ||||||| || ||||||||| |||||||||||| |||||||||||||||| ||||| | |||||||||||||||| |
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| T |
1975279 |
tgtgtacattgcaatcaaaaaaatagtgtgaaacctgtaattgctaagaagaaaaagagtatcaattggttgtttatgttgatgggacaaatgcttggtt |
1975180 |
T |
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| Q |
143 |
gttg |
146 |
Q |
| |
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|||| |
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| T |
1975179 |
gttg |
1975176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 25040811 - 25040582
Alignment:
| Q |
18 |
tttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgttt |
117 |
Q |
| |
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||||||| |||||| |||| || ||| ||||||||||||||||||| |||| || ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25040811 |
tttgatgaatccaaaattgccaaaatgtttgcattgcaatcaagaaaatagtgttaaaccggtgattgctgagaagaaaaagaatatcaattggttgttt |
25040712 |
T |
|
| Q |
118 |
ctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaatagggttc |
217 |
Q |
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|||||||| |||||||| |||||||||| ||||||||||||||||| |||||||||||||| || | ||||||||| | |||||||||||||| |||| |
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| T |
25040711 |
ctgttgctgggacaaataattggttgttgcaagcttgaacaattgaagtatttttgcaagtacaacggtcatcatcgagctggtgccaagaatagagttc |
25040612 |
T |
|
| Q |
218 |
tttatttgacttatcttgaactttgcaaac |
247 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |
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| T |
25040611 |
tttatttgacttattttgaactatgcaaac |
25040582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 25044549 - 25044317
Alignment:
| Q |
18 |
tttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgttt |
117 |
Q |
| |
|
||||||| ||||||||||| | |||||||||||||| |||||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||| |
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| T |
25044549 |
tttgatgaatccaagattgccaagatgtgtgcattgcaacaaagaaaacagtgtgaagccgataattgccgagaagaagaagaatatcaattggttgttt |
25044450 |
T |
|
| Q |
118 |
ctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaatagggttc |
217 |
Q |
| |
|
||| || | ||||||||||| |||||||| || ||| |||||||||| ||||||||||||||||| | ||||||| |||| |||||||| |||||||||| |
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| T |
25044449 |
ctgctgttgggacaaatgctgggttgttgcaatcttaaacaattgaagtatttttgcaagtataacaaccatcatagaacaggtgccaaaaatagggttc |
25044350 |
T |
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| Q |
218 |
tttatttgacttatcttgaactttgcaaacaac |
250 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| |
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|
| T |
25044349 |
tttatttaacttatcttgaactatgcaaacaac |
25044317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 250
Target Start/End: Original strand, 54479360 - 54479567
Alignment:
| Q |
43 |
tgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggtt |
142 |
Q |
| |
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|||||||| || |||||| ||||| |||||||||||||||||||||| |||||| || |||||| ||| |||||||||| |||||||||||||||| | |
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| T |
54479360 |
tgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttggct |
54479459 |
T |
|
| Q |
143 |
gttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaatagggttctttatttgacttatcttgaactttg |
242 |
Q |
| |
|
| || | || | |||| |||| ||||| ||||| | | | ||||| | | |||||||||||||| ||||||||||| |||||||||| ||| || |
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|
| T |
54479460 |
gctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggtgccaagaatagagttctttatttaacttatcttggactctg |
54479559 |
T |
|
| Q |
243 |
caaacaac |
250 |
Q |
| |
|
|||||||| |
|
|
| T |
54479560 |
caaacaac |
54479567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 25042958 - 25042759
Alignment:
| Q |
18 |
tttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaag--aatatcaattggttgt |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||| ||| | ||||||| | |||| |||| ||||||||||| |||||||| | | || |
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|
| T |
25042958 |
tttgatgtatccaagattgctgaagtgtgtgcatt--tatcgagata---gtgtgaaactggtacttgccaagaagaaaaagataatatcaactagatgc |
25042864 |
T |
|
| Q |
116 |
ttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaatagggt |
215 |
Q |
| |
|
|||||||| | |||||||||||||| || || |||||||||| | |||||||| ||| ||||| | ||||||||| ||| ||||||| |||||||| |
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|
| T |
25042863 |
ttctgttgttgggacaaatgcttggctgctgcaagcttgaaccactgaaatatattttcaagt----caaccatcatcgtaccagtgccaaaaatagggt |
25042768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 24690740 - 24690534
Alignment:
| Q |
18 |
tttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgttt |
117 |
Q |
| |
|
||||||| ||||||||||| || ||||| |||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||| |||||| |
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|
| T |
24690740 |
tttgatgaatccaagattgtcaaaatgtgtacattgcaatcaagaaaccaatgtgaagccggtaattattgagaagaaaaagaatatcaattgattgttt |
24690641 |
T |
|
| Q |
118 |
ctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaatagggttc |
217 |
Q |
| |
|
||||| || |||||||| |||||||||| |||| |||| |||| | ||||||||||||||||| | ||||||||||| ||||||| |||||| || |
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|
| T |
24690640 |
ctgtttctgagacaaatgattggttgttgcaagcatgaataattaaggtatttttgcaagtataacaatcatcatcgaacaagtgccaaaaataggtttt |
24690541 |
T |
|
| Q |
218 |
tttattt |
224 |
Q |
| |
|
||||||| |
|
|
| T |
24690540 |
tttattt |
24690534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 39600540 - 39600467
Alignment:
| Q |
103 |
atcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaa |
176 |
Q |
| |
|
||||||||||||||| ||||| | || || ||| |||| ||||| |||||| |||| ||||||||||| ||||| |
|
|
| T |
39600540 |
atcaattggttgtttttgttgttgggtcagatgattgggtgttgcaagcttcaacatttgaaatatttctgcaa |
39600467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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