View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9950_high_1 (Length: 680)
Name: NF9950_high_1
Description: NF9950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9950_high_1 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 626; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 20 - 676
Target Start/End: Complemental strand, 1718302 - 1717643
Alignment:
| Q |
20 |
tgatgcagattaagtcactttggacaataaactcctcatatagatgcttgtacccctggttatatatatagatatctcagtcacattgttgagatttgtg |
119 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1718302 |
tgatgcagattaagtcattttggacaataaactcctcatatagatgcttgtacccctggttatatatatagatatctcagtcacattgttgagatttgtg |
1718203 |
T |
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| Q |
120 |
ttttattcttgtttgttctttgctaagatagatcaaatgttatatgcacttttgcagaaaagctatatagatgagtatatgactgcattacttgaacatt |
219 |
Q |
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| T |
1718202 |
ttttattctcgtttgttctttgctaagatagatcaaatgttatatgcacttttgcagaaaagctatatagatgagtatatgactgcattacttgaacatt |
1718103 |
T |
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| Q |
220 |
gtaattttattgagggtgatttttgcaaccatgattcggttcaaaaagaagtttctaaagttatttgggaatctccaagttgaaaaaaccatttttaatc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1718102 |
gtaattttattgagggtgatttttgcaaccatgattcggttcaaaaagaagtttctaaagttatttgggaatctccaagttaaaaaaaccatttttaatc |
1718003 |
T |
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| Q |
320 |
ctaaagaaaccaatccaaccattctttgcaattccataagtcatgttatatacgtatcatccaactgcaattcaaagaatatcagcaaatgaatacgtga |
419 |
Q |
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| T |
1718002 |
ctaaagaaaccaatccaaccattctttgcaattccataagtcatgttatatacgtatcttccaactgcaattcaaagaatatcagcaaatgaatacgtga |
1717903 |
T |
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| Q |
420 |
gcatgagaggctaaaatagaacctcattcaatcaaatcagtgataaaggtcttggaaggtagaaaaataagaaatgaatactgtcactacaagcacgtca |
519 |
Q |
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| T |
1717902 |
gcatgagaggctaaaatagaacctcattcaatcaaatcagtgataaaggtcttggaaggtagaaaaataagaaatgaatactgtcactacaagcacgtca |
1717803 |
T |
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| Q |
520 |
acacagcagaacatttttcagaccagattcctctcattctcatatcctaccataaaattaattagcaaagaatcaaatcaaaatttccatgacattcaat |
619 |
Q |
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| T |
1717802 |
acacagcagaacatttttcagaccagattcctctcattctcatatcctaccataaaattaattagcaaagaatcaaatcaaaatttccatgacattcaat |
1717703 |
T |
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| Q |
620 |
ttcaagttgcatacaaagaatataatcttcttaaaat---acacatggttcttctctctc |
676 |
Q |
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| T |
1717702 |
ttcaagttgcatacaaagaatataatcttcttaaaataaaacacatggttcttctttctc |
1717643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 21263206 - 21263257
Alignment:
| Q |
273 |
tctaaagttatttgggaatctccaagttgaaaaaaccatttttaatcctaaa |
324 |
Q |
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| T |
21263206 |
tctagagttatttgggaatatccaagttgaaaaagccatttttaatcctaaa |
21263257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 11852 - 11903
Alignment:
| Q |
273 |
tctaaagttatttgggaatctccaagttgaaaaaaccatttttaatcctaaa |
324 |
Q |
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| T |
11852 |
tctagagttatttgagaatatccaagttgaaaaggccatttttaatcctaaa |
11903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 42934919 - 42934868
Alignment:
| Q |
273 |
tctaaagttatttgggaatctccaagttgaaaaaaccatttttaatcctaaa |
324 |
Q |
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| T |
42934919 |
tctagagttatttgagaatatccaagttgaaaaggccatttttaatcctaaa |
42934868 |
T |
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