View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9950_high_6 (Length: 259)
Name: NF9950_high_6
Description: NF9950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9950_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 116 - 246
Target Start/End: Complemental strand, 41780469 - 41780332
Alignment:
| Q |
116 |
tattttcgaccttactatcaaagtcattcttatacgttgttggactgaaaataaggtgtgatattcctcaattgaatgccatcgtgataatctt------ |
209 |
Q |
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| T |
41780469 |
tattttcgacctaactatcaaagtcattcttatacgttgttggactgaaaataaggtgtgatattcctcaattggatgccatcgtgataatcttaaaagt |
41780370 |
T |
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| Q |
210 |
-aaaattaagagagaagaaggaaatataataatactct |
246 |
Q |
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| T |
41780369 |
taaaattaagagagaagaaggaaatataataatactct |
41780332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 116 - 246
Target Start/End: Complemental strand, 41787033 - 41786900
Alignment:
| Q |
116 |
tattttcgaccttactatcaaagtcattcttatacgttgttggactgaaaataaggtgtgatattcctcaattgaatgccatcgtgataatcttaaaatt |
215 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
41787033 |
tattttcgacctaactatcaaagtcattcttataggttgttggactgaaaataaggtgtgatattcctcaattggatgccatcgtgatactcttaaaatt |
41786934 |
T |
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| Q |
216 |
aaga--gagaagaaggaaatat-aataatactct |
246 |
Q |
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| T |
41786933 |
aagagagagaagaaggaaatataaataatactct |
41786900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 41791876 - 41791760
Alignment:
| Q |
120 |
ttcgaccttactatcaaagtcattcttatacgttgttggactgaaaataaggtgtgatattcctcaattgaatgccatcgtgataatcttaaaattaaga |
219 |
Q |
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|||||||| ||||||||||||||||||||| || | ||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||||||||| |
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| T |
41791876 |
ttcgacctaactatcaaagtcattcttataggtggcgggactgaaaataaggtgtgatattcttcaattg-ctgccatcgtgatacttctaaaattaaga |
41791778 |
T |
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| Q |
220 |
gagaagaaggaaatataa |
237 |
Q |
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|||||||||||||||||| |
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| T |
41791777 |
gagaagaaggaaatataa |
41791760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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