View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9950_low_2 (Length: 648)
Name: NF9950_low_2
Description: NF9950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9950_low_2 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 526; Significance: 0; HSPs: 16)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 12 - 633
Target Start/End: Complemental strand, 31613103 - 31612482
Alignment:
| Q |
12 |
agcataggaagcgggggattggggcatgaaccaacatcgacaaatgattatgatgatgaacatgacaaaaacaaaacaaaagttcatccaaagaaaccaa |
111 |
Q |
| |
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|||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31613103 |
agcacaggaagcggaggattggggcatgatccaacatcgacaaatgattatgatgatgaacatgacaaaaacaaaacaaaagttaatccaaagaaaccaa |
31613004 |
T |
|
| Q |
112 |
taggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaacaaatccaccaaaaaattctgatgatgatgaagatca |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31613003 |
taggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaacaaatccaccaaaaaattctgatgatgatgaagatca |
31612904 |
T |
|
| Q |
212 |
acttgacaatggcgatgagtgagtggtgatttttcttttcagaaaatggtaataagagttcttagggcattgtttaagcacattaattaggagttgtttt |
311 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| |
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| T |
31612903 |
acttgacaaaggcgatgagtgagtggtgatttttctttttaggaaatggtaataagagttctcagggcattatttaagcacattaattaggatttgtttt |
31612804 |
T |
|
| Q |
312 |
aattaattttctcatgaaattaatggatattgttttggcattcttacactgaaatgagaatggatgatagttaatattacatggttctagttttttaatt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31612803 |
aattaattttctcatgaaattaatggatattgttttggcattcttacattgaaatgagaatggatgatagttaatattacatgcttctagttttttaatt |
31612704 |
T |
|
| Q |
412 |
ttggtttatgaattacaaaatcaccaaaatgattatcggcttcacaacaagttgcctctacatttcacggtcctgtctaaaaagttatacaaaccagact |
511 |
Q |
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|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| ||||||||| |||||| |
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| T |
31612703 |
ttggtttatgaattacaaaatcacaaaaatgattatcggcttcacgacaagttgcctctacatttcacggtattgcctaaaaaattatacaaatcagact |
31612604 |
T |
|
| Q |
512 |
atcaaccaaaatatctctaagataaaacaactcatttcagtgtacgattggatcagttttcaaagataaatgcagaagctgagcatatgtcaaaggtttc |
611 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| |
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| T |
31612603 |
atcaaccaaaatatctctaaaataaaacaactcatttcagtgtacgattggatcagtcttcaatgacaaatgcagaagctgagcatatgtcaaaggtttc |
31612504 |
T |
|
| Q |
612 |
ttatgccggttttattggttgt |
633 |
Q |
| |
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|||||| ||||||||||||||| |
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| T |
31612503 |
ttatgctggttttattggttgt |
31612482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 31608465 - 31608359
Alignment:
| Q |
114 |
ggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaacaaatccaccaaaaaattctgatgatgatgaagatcaac |
213 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31608465 |
ggtagcacaggaagcgaaggtttggggactgatccgcaaatggagaatcctcagctaccaacaaatccaccaaaaaattctgatgatgatgaagatcaac |
31608366 |
T |
|
| Q |
214 |
ttgacaa |
220 |
Q |
| |
|
||||||| |
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|
| T |
31608365 |
ttgacaa |
31608359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 329 - 432
Target Start/End: Complemental strand, 31607228 - 31607125
Alignment:
| Q |
329 |
aattaatggatattgttttggcattcttacactgaaatgagaatggatgatagttaatattacatggttctagttttttaattttggtttatgaattaca |
428 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| |||||| |||| |||||||||||||||||||||| | |||||| ||| |||||||||||||||||| | |
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|
| T |
31607228 |
aattaatggatatggttttggcatttttacattgaaataagaacggatgatagttaatattacatgctactagttgttttattttggtttatgaattaga |
31607129 |
T |
|
| Q |
429 |
aaat |
432 |
Q |
| |
|
|||| |
|
|
| T |
31607128 |
aaat |
31607125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 31623912 - 31623768
Alignment:
| Q |
76 |
acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaac |
175 |
Q |
| |
|
|||||| |||||| |||||| || || ||||||| |||||||||||| | |||||||||||||||| ||| || ||| ||| | | |||||||| |
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|
| T |
31623912 |
acaaaaccaaaaccaaagttggtcgaaggaaaccaccaggtagcacaggtggaggaggattggggactggtccacacacgaatattacaaagctaccaaa |
31623813 |
T |
|
| Q |
176 |
aaatccaccaaaaaattctgatgatgatgaagatcaacttgacaa |
220 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
31623812 |
aaatccaccaaaagattctgatgatgatgaagatcaacttgacaa |
31623768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 31623693 - 31623614
Alignment:
| Q |
279 |
cattgtttaa-gcacattaattaggagttgttttaattaattttctcatgaaattaatggatattgttttggcattctta |
357 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | ||||||| |
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|
| T |
31623693 |
cattgtttaatgcacattaattaggagttgttttaattaattttttcatgtaattaatggatattgtttttgtattctta |
31623614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 31605099 - 31605021
Alignment:
| Q |
279 |
cattgtttaa-gcacattaattaggagttgttttaattaattttctcatgaaattaatggatattgttttggcattctta |
357 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
31605099 |
cattgtttaaagcacattaattag-agttgttttaattaattttctcatgaaattaatggacgttgttttgggattctta |
31605021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 31605378 - 31605315
Alignment:
| Q |
76 |
acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggg |
139 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
31605378 |
acaaaaacaaaacaaaagttgatcgaaagaaaccaataggtagcacaggaggcggaggattggg |
31605315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 558 - 633
Target Start/End: Complemental strand, 31611535 - 31611460
Alignment:
| Q |
558 |
attggatcagttttcaaagataaatgcagaagctgagcatatgtcaaaggtttcttatgccggttttattggttgt |
633 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| |||||||||||||||||| |||||||| |||||||||||||| |
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|
| T |
31611535 |
attggattagttttcaaagacaaatgcagaagtagagcatatgtcaaaggttccttatgccagttttattggttgt |
31611460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 31608647 - 31608574
Alignment:
| Q |
76 |
acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggggactgatccgcaa |
152 |
Q |
| |
|
|||||||||||||||||||| || ||| ||||||||||| ||| ||||| |||||||||||||||||||||||| |
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| T |
31608647 |
acaaaaacaaaacaaaagtttatgcaatgaaaccaatagttagaccagga---ggaggattggggactgatccgcaa |
31608574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 31619289 - 31619231
Alignment:
| Q |
76 |
acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggagga |
134 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| |
|
|
| T |
31619289 |
acaaaaacaaaacaaaagttgttggaaagaaaccaatgggtagcacaggaagcggagga |
31619231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 76 - 203
Target Start/End: Complemental strand, 31624059 - 31623932
Alignment:
| Q |
76 |
acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaac |
175 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| ||||| | |||||| ||||||||||||||| ||| ||||| | ||| ||| | | ||| |
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|
| T |
31624059 |
acaaaaacaaaacaaaagttgttggaaagaaaccaacgggtaggaaaggaagaagaggattggggactggtccaaaaacggagaatgctcagggaataac |
31623960 |
T |
|
| Q |
176 |
aaatccaccaaaaaattctgatgatgat |
203 |
Q |
| |
|
|| ||||||||||| ||||||||||||| |
|
|
| T |
31623959 |
aattccaccaaaaacttctgatgatgat |
31623932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 31605276 - 31605227
Alignment:
| Q |
106 |
aaccaataggtagcacaggaagcggaggattggggactgatccgcaaacg |
155 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
31605276 |
aaccaatgggtagcacaggaagcggaggaaaggggactgatgcgcaaacg |
31605227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 31607379 - 31607302
Alignment:
| Q |
279 |
cattgtttaa-gcacattaattaggagttgttttaattaattttctcatgaaattaatggatattgttttggcattctta |
357 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| ||||||||| | || || |||||| |||||||||||||||| |||||| |
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|
| T |
31607379 |
cattgtttaaagcacattaattagaagttgatttaattaaatgtc--attaaattagtggatattgttttggcgttctta |
31607302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 525 - 560
Target Start/End: Complemental strand, 31607017 - 31606982
Alignment:
| Q |
525 |
tctctaagataaaacaactcatttcagtgtacgatt |
560 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31607017 |
tctctaagataaaacaacccatttcagtgtacgatt |
31606982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 140
Target Start/End: Complemental strand, 31613119 - 31613080
Alignment:
| Q |
101 |
aaagaaaccaataggtagcacaggaagcggaggattgggg |
140 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
31613119 |
aaagaaaccgatgggtagcacaggaagcggaggattgggg |
31613080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 31619130 - 31619094
Alignment:
| Q |
181 |
caccaaaaaattctgatgatgatgaagatcaacttga |
217 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
31619130 |
caccaataaattctgatgacgatgaagatcaacttga |
31619094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 558 - 633
Target Start/End: Complemental strand, 33559704 - 33559629
Alignment:
| Q |
558 |
attggatcagttttcaaagataaatgcagaagctgagcatatgtcaaaggtttcttatgccggttttattggttgt |
633 |
Q |
| |
|
||||||| ||| | |||||||| ||||||||| | || |||||||||||||| |||||| | || ||||||||||| |
|
|
| T |
33559704 |
attggattagtgtccaaagatagatgcagaagttaagtatatgtcaaaggttccttatgtcagtgttattggttgt |
33559629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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