View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9950_low_3 (Length: 397)
Name: NF9950_low_3
Description: NF9950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9950_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 27 - 378
Target Start/End: Original strand, 51739037 - 51739391
Alignment:
| Q |
27 |
ttgttaaaacgtaaaatttcatatcagattcctttctttgtctaatttattgattgaagttttgacaaacacattaaatgcacacaatggatgccacaca |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||| || |
|
|
| T |
51739037 |
ttgttaaaacgtaaaatttcatatcagattcctttctttgtctaatttattgattga-gttttgacaaaaacattaaatccacacaatggatgccaccca |
51739135 |
T |
|
| Q |
127 |
caaaatgttttgtaataaagaactagttaaccctctatactcaatgggcatgcaagtgtcatgtattcttgttgtctcacacttcttcaacgttgtcctt |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51739136 |
caaaatgttttgtaataaagaactagttaaccctctatactcaatgggcatgcaagtgtcatgtattcttgttgtctcacacttcttcaacgttgtcctt |
51739235 |
T |
|
| Q |
227 |
aggaccctaggtcaacctggacccgttgcacaaattctggtaattgattagttattgtttcat---tctacattattta-tttacattgaagttttcaat |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||| |
|
|
| T |
51739236 |
aggaccctaggtcaacctggacccgttgcacaaattctggtaattgattagttattgtttcattaatctacattatttacattgaattgaagttttcaat |
51739335 |
T |
|
| Q |
323 |
tattaatgcattgattgcattgttgaattacaggcagggttggtattaggcccaat |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51739336 |
tattaatgcattgattgcattgttgaattacaggcagggttggtattaggcccaat |
51739391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 131 - 270
Target Start/End: Original strand, 10199570 - 10199709
Alignment:
| Q |
131 |
atgttttgtaataaagaactagttaaccctctatactcaatgggcatgcaagtgtcatgtattcttgttgtctcacacttcttcaacgttgtccttagga |
230 |
Q |
| |
|
||||||||||| | || || |||||||||||| || ||||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
10199570 |
atgttttgtaacgatgatcttgttaaccctctaagttctatgggtatgcaagtgtcatgcattcttgttgtgtcacacttcttcaacgttgttcttagga |
10199669 |
T |
|
| Q |
231 |
ccctaggtcaacctggacccgttgcacaaattctggtaat |
270 |
Q |
| |
|
| | || |||||||||||| ||||||||||||||||||| |
|
|
| T |
10199670 |
ctatgggccaacctggacccattgcacaaattctggtaat |
10199709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University