View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9950_low_5 (Length: 322)
Name: NF9950_low_5
Description: NF9950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9950_low_5 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 18427001 - 18426704
Alignment:
| Q |
11 |
caaaggctatggttatggtgattaaaaagaaattcaaagaaggaaataccaatggtttcgaagaaggtttgaaaattattcatcttttgtggaatgaagc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| |
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| T |
18427001 |
caaaggctatggttatggtgattaaaaagaaattcaaagaaggaaataccaatggtttagaagaagctttgaaaattattcgtcttttgtggaatgaagc |
18426902 |
T |
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| Q |
111 |
aatgatcaacaacatgatgaagcctttggttggcaaaaacatggatttcatgaactcgttgacttggattttgaaaatttacattgatactaacaatttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18426901 |
aatgatcaacaacatgatgaagcctttggttggcaaaaacatggatttcatgaactcgttgacttggattttgaaaatttacattgatactaacaatttt |
18426802 |
T |
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| Q |
211 |
gagatgataaatgaagttatgccattactaaagttgacaattgatgttgtggactcaaaccttttaggaaatttaaacattgaattctttgtaacaat |
308 |
Q |
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| T |
18426801 |
gagatggtaaatgaagttatgccattactaaagttgacaattgatgttgtggactcaaaccttttaggaaatttaaacattgaattctttgtaacaat |
18426704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 21767072 - 21767354
Alignment:
| Q |
17 |
ctatggttatggtgattaaaaagaaattcaaagaaggaaataccaatggtttcgaagaaggtttgaaaattattcatcttttgtggaatgaagcaatgat |
116 |
Q |
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||||| ||||||| |||||||||||||||||| ||||||| |||| |||||| ||||||| ||||||||||| || |||||||||||||||||||| ||| |
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| T |
21767072 |
ctatgattatggtcattaaaaagaaattcaaacaaggaaacaccattggtttggaagaagctttgaaaattactcgtcttttgtggaatgaagcaacgat |
21767171 |
T |
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| Q |
117 |
caacaacatgatgaagcctttggttggcaaaaacatggatttcatgaactcgttgacttggattttgaaaatttacattgatactaacaattttgagatg |
216 |
Q |
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| T |
21767172 |
caacaacagggtgaaacttttggttggcaaaaacatggatttcatgaatttgttgacttggattttgaaaatttacattgataacaacaatttcgagatg |
21767271 |
T |
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| Q |
217 |
ataaatgaagttatgccattactaaagttgacaattgatgttgtggactcaaaccttttaggaaatttaaacattgaattctt |
299 |
Q |
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| T |
21767272 |
ctaaatgaagttatgccattattgaagttgacaattgatgttgtagattcaaaccttttaagaaatttaaacattgaattctt |
21767354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 13626144 - 13626431
Alignment:
| Q |
17 |
ctatggttatggtgattaaaaagaaattcaaagaaggaaataccaatggtttcgaagaaggtttgaaaattattcatcttttgtggaatgaagcaatgat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||| ||| |||||||||||||||||| ||||| |
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| T |
13626144 |
ctatggttatggtgattaaaaagaaattcaaagaaggaaacaccaatggtttggaagaagctttgaaaattcttcgtcttttgtggaatgaagcgatgat |
13626243 |
T |
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| Q |
117 |
caacaacatgatgaagcctttggttggcaaaaacatggatttcatgaactcgttgacttggattttgaaaatttacattgatactaacaattttgagatg |
216 |
Q |
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|||||||| | |||| | ||||| | ||||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13626244 |
caacaacagggtgaaacttttgggtcgcaaaaacatggatttcctgaatttgttgacttggattttgaaaatttacattga---taacaattttgagata |
13626340 |
T |
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| Q |
217 |
ataaatgaagttatgccattactaaagttgacaattgatgttgtggactcaaaccttttaggaaatttaaacattgaattctttgtaacaat |
308 |
Q |
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| T |
13626341 |
gtaaatgaacttacgccattattaaagttgacaattgatgttgt-gattcaaaccttttaggaaatttacacattgaattctttgtaacaat |
13626431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 13526914 - 13527196
Alignment:
| Q |
17 |
ctatggttatggtgattaaaaagaaattcaaagaaggaaataccaatggtttcgaagaaggtttgaaaattattcatcttttgtggaatgaagcaatgat |
116 |
Q |
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||||| ||||||| |||||||||||||||||| ||||||| |||| |||||| ||||||| ||||||||||| || |||||||||||||||||||| ||| |
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| T |
13526914 |
ctatgattatggtcattaaaaagaaattcaaacaaggaaacaccattggtttggaagaagctttgaaaattactcgtcttttgtggaatgaagcaacgat |
13527013 |
T |
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| Q |
117 |
caacaacatgatgaagcctttggttggcaaaaacatggatttcatgaactcgttgacttggattttgaaaatttacattgatactaacaattttgagatg |
216 |
Q |
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|||||| | |||| | |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||| || |||||| |
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| T |
13527014 |
caacaatagtgtgaaacttttggttggcaaaaacatggatttcatgaatttgttgacttggattttgaaaatttacattgataacaacaacttcgagatg |
13527113 |
T |
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| Q |
217 |
ataaatgaagttatgccattactaaagttgacaattgatgttgtggactcaaaccttttaggaaatttaaacattgaattctt |
299 |
Q |
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||||||||||||||||| || | |||||||||||||||||||| || |||||||||||| |||||||||||||||||||||| |
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| T |
13527114 |
gtaaatgaagttatgccagtattgaagttgacaattgatgttgtagattcaaaccttttaagaaatttaaacattgaattctt |
13527196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 124269 - 124551
Alignment:
| Q |
17 |
ctatggttatggtgattaaaaagaaattcaaagaaggaaataccaatggtttcgaagaaggtttgaaaattattcatcttttgtggaatgaagcaatgat |
116 |
Q |
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||||| ||||||| |||||||||||||||||| ||||||| |||| |||||| ||||||| ||||||||||| || ||||||||||||||||||| ||| |
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| T |
124269 |
ctatgattatggtcattaaaaagaaattcaaaaaaggaaacaccattggtttggaagaagctttgaaaattactcgtcttttgtggaatgaagcagcgat |
124368 |
T |
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| Q |
117 |
caacaacatgatgaagcctttggttggcaaaaacatggatttcatgaactcgttgacttggattttgaaaatttacattgatactaacaattttgagatg |
216 |
Q |
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|||||||| | |||| | |||||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
124369 |
caacaacaggttgaaacttttggttggcaaaaacatggatatcatgaatttgttaacttggattttgaaaatttacattgataacaacaatttcgagatg |
124468 |
T |
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| Q |
217 |
ataaatgaagttatgccattactaaagttgacaattgatgttgtggactcaaaccttttaggaaatttaaacattgaattctt |
299 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||| || |||||||||||| ||||||||||||| |||||||| |
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| T |
124469 |
gtaaatgaagttatgccattattgaagttgacaattgatgttgtagattcaaaccttttaagaaatttaaacatcgaattctt |
124551 |
T |
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