View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9950_low_8 (Length: 230)
Name: NF9950_low_8
Description: NF9950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9950_low_8 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0083 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 54389 - 54584
Alignment:
| Q |
1 |
agatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacctgaaactggaacacaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
54389 |
agatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc---tttctggtaggaactgtggaacatacctgaaatgggaacacaact |
54485 |
T |
|
| Q |
101 |
tgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttctactaacaatg |
200 |
Q |
| |
|
||| || || |||||||||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
54486 |
tgt-ct-atcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatg |
54583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 9980748 - 9980553
Alignment:
| Q |
1 |
agatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacctgaaactggaacacaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9980748 |
agatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc---tttctggtaggaactgtggaacatacctgaaatgggaacacaact |
9980652 |
T |
|
| Q |
101 |
tgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttctactaacaatg |
200 |
Q |
| |
|
||| || || |||||||||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
9980651 |
tgt-ct-atcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatg |
9980554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 10035285 - 10035090
Alignment:
| Q |
1 |
agatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacctgaaactggaacacaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10035285 |
agatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc---tttctggtaggaactgtggaacatacctgaaatgggaacacaact |
10035189 |
T |
|
| Q |
101 |
tgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttctactaacaatg |
200 |
Q |
| |
|
||| || || ||||||||||||| | |||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
10035188 |
tgt-ct-atcatattgtgacttcatgatttatatctatgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatg |
10035091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 10263983 - 10263788
Alignment:
| Q |
1 |
agatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacctgaaactggaacacaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10263983 |
agatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc---tttctggtaggaactgtggaacatacctgaaatgggaacacaact |
10263887 |
T |
|
| Q |
101 |
tgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttctactaacaatg |
200 |
Q |
| |
|
||| || || ||||||||||||| |||||||| ||||| |||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||| |
|
|
| T |
10263886 |
tgt-ct-atcatattgtgacttcatcatttattcttatgaaagggatgtgagcaattttggactaatgttccttccttttatacctttcttctaacaatg |
10263789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 32 - 206
Target Start/End: Complemental strand, 9853128 - 9852959
Alignment:
| Q |
32 |
tacagatgattgattattggcagttttctggtaggaactgtggaacatacctgaaactggaacacaacttgttctcatgatattgtgacttcgtcattta |
131 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || || ||||||| || | |||||||| |
|
|
| T |
9853128 |
tacagaggattgattattggc---tttctggtaggaactgtggaacatacctgaaatgggaacacaacttgt-ct-atcatattgtaacctggtcattta |
9853034 |
T |
|
| Q |
132 |
tatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttctactaacaatggacatc |
206 |
Q |
| |
|
| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9853033 |
tttctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacatc |
9852959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 10520736 - 10520568
Alignment:
| Q |
32 |
tacagatgattgattattggcagttttctggtaggaactgtggaacatacctgaaactggaacacaacttgttctcatgatattgtgacttcgtcattta |
131 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||||| || ||||| |
|
|
| T |
10520736 |
tacagaggattgattattggc---tttctggtaggaactgtggaacatacctgaaatgggaacacaacttgt-ct-atcatattgtgacttggtaattta |
10520642 |
T |
|
| Q |
132 |
tatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttctactaacaatggacat |
205 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10520641 |
ttgatatgactgggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacat |
10520568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 32 - 206
Target Start/End: Complemental strand, 9842109 - 9841940
Alignment:
| Q |
32 |
tacagatgattgattattggcagttttctggtaggaactgtggaacatacctgaaactggaacacaacttgttctcatgatattgtgacttcgtcattta |
131 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| || || ||||| |||||| || |||| |
|
|
| T |
9842109 |
tacagaggattgattattggc---tttctggtaggaactgtggaacatacctgaaacgggaacacaacttgt-ct-atcatattctgacttggtggttta |
9842015 |
T |
|
| Q |
132 |
tatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttctactaacaatggacatc |
206 |
Q |
| |
|
| |||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9842014 |
tccatatgacagggatgtgagcaattttggagcaatgttccttccttttatacctttcttctaacaatggacatc |
9841940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 40 - 201
Target Start/End: Complemental strand, 10583829 - 10583669
Alignment:
| Q |
40 |
attgattattggcagttttctggtaggaactgtggaacatacctgaaa-ctggaacacaacttgttctcatgatattgtgacttcgtcatttatatatat |
138 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||| || || |||||||||||| || |||||| | ||| |
|
|
| T |
10583829 |
attgattattggcagttttctggtaggaaatgtggaacatacctgaaaacgggaacacaacttgt-ct-atcatattgtgactttgtgatttatttgtat |
10583732 |
T |
|
| Q |
139 |
gacagggatgtgagcaattttggaccactgttccttccttttatacctttctactaacaatgg |
201 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| |||||||||||||||||| |||||||||| |
|
|
| T |
10583731 |
gacagggatgtgagcaattttggaccaatattcattccttttatacctttcttctaacaatgg |
10583669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 10130197 - 10130004
Alignment:
| Q |
1 |
agatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggcagttttctggtaggaactgtggaacatacctgaaactggaacacaact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||| ||||||||||| ||||||||||| |
|
|
| T |
10130197 |
agatgatatgaaaatattaagaggtgtgtcgtacagaggattgattattggc---tttctggtaggaact-aggagcatacctgaaatgggaacacaact |
10130102 |
T |
|
| Q |
101 |
tgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttctactaacaatg |
200 |
Q |
| |
|
|| ||| || |||||||| || || |||| | ||| ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||| |
|
|
| T |
10130101 |
tg-tct-atcatattgtgcct------ttgatatttttgaaagggatgtgagcaattttggagcaatgttccttccttttatacctttcttctaacaatg |
10130010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 75 - 205
Target Start/End: Original strand, 10430898 - 10431027
Alignment:
| Q |
75 |
aacatacctgaaa-ctggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttcct |
173 |
Q |
| |
|
||||||||||||| |||||||||||||||| || || ||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10430898 |
aacatacctgaaaactggaacacaacttgt-ct-atcatattgtgacttcatcatttatatctatgacagggatgtgagcaattttggaccaatgttcct |
10430995 |
T |
|
| Q |
174 |
tccttttatacctttctactaacaatggacat |
205 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |
|
|
| T |
10430996 |
tccttttatacctttcttctaacaatggacat |
10431027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 205
Target Start/End: Complemental strand, 10666742 - 10666618
Alignment:
| Q |
79 |
tacctgaaactggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttcctt |
178 |
Q |
| |
|
|||||||||| ||||||||||| || || || |||||||||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10666742 |
tacctgaaacaggaacacaactcgt-ct-atcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgttccttcctt |
10666645 |
T |
|
| Q |
179 |
ttatacctttctactaacaatggacat |
205 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
10666644 |
ttatacctttcttctaacaatggacat |
10666618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 11772429 - 11772316
Alignment:
| Q |
90 |
ggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttc |
189 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| |||||||||| |||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
11772429 |
ggaacacagcttgttctcat---attgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttc |
11772333 |
T |
|
| Q |
190 |
tactaacaatggacatc |
206 |
Q |
| |
|
| |||||||||| |||| |
|
|
| T |
11772332 |
ttctaacaatgggcatc |
11772316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 206
Target Start/End: Original strand, 10372768 - 10372898
Alignment:
| Q |
75 |
aacatacctgaaa-ctggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttcct |
173 |
Q |
| |
|
||||||||||||| | |||||||||||||| || || ||||||||| || ||| ||||| | |||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
10372768 |
aacatacctgaaaacgggaacacaacttgt-ct-atcatattgtgatttggtcgtttatttttatgacggggatgtgagcaattttggaccaatgttcct |
10372865 |
T |
|
| Q |
174 |
tccttttatacctttctactaacaatggacatc |
206 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| |
|
|
| T |
10372866 |
tccttttatacctttcttctaacaatgggcatc |
10372898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 75 - 201
Target Start/End: Original strand, 10360658 - 10360783
Alignment:
| Q |
75 |
aacatacctgaaa-ctggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttcct |
173 |
Q |
| |
|
||||||||||||| | |||||||||||||| || || |||||||||||| ||| ||||| | |||||| |||||||||||||||||||| || ||||||| |
|
|
| T |
10360658 |
aacatacctgaaaacgggaacacaacttgt-ct-atcatattgtgacttggtcgtttatttttatgacggggatgtgagcaattttggagcaatgttcct |
10360755 |
T |
|
| Q |
174 |
tccttttatacctttctactaacaatgg |
201 |
Q |
| |
|
||||||||||||||||| |||||||||| |
|
|
| T |
10360756 |
tccttttatacctttcttctaacaatgg |
10360783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 206
Target Start/End: Original strand, 11778856 - 11778969
Alignment:
| Q |
90 |
ggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttc |
189 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| |||||||| | |||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
11778856 |
ggaacacagcttgttctcat---attgtgactttttcatttatttctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttc |
11778952 |
T |
|
| Q |
190 |
tactaacaatggacatc |
206 |
Q |
| |
|
| |||||||||| |||| |
|
|
| T |
11778953 |
ttctaacaatgggcatc |
11778969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 10092146 - 10092077
Alignment:
| Q |
137 |
atgacagggatgtgagcaattttggaccactgttccttccttttatacctttctactaacaatggacatc |
206 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
10092146 |
atgacagggatgtgagaaattttggaccaatgttccttccttttatacctttcttctaacaatgggcatc |
10092077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 10199028 - 10198959
Alignment:
| Q |
137 |
atgacagggatgtgagcaattttggaccactgttccttccttttatacctttctactaacaatggacatc |
206 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
10199028 |
atgacagggatgtgagaaattttggaccaatgttccttccttttatacctttcttctaacaatgggcatc |
10198959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10430735 - 10430786
Alignment:
| Q |
1 |
agatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10430735 |
agatgatatgaaaatattaagaggtgtgtcgtacagatgattgattattggc |
10430786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 195
Target Start/End: Complemental strand, 10503857 - 10503744
Alignment:
| Q |
79 |
tacctgaaactggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttcctt |
178 |
Q |
| |
|
|||||||||| |||||||| | ||| ||||| |||||||||| ||| ||| | ||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
10503857 |
tacctgaaacgggaacacagcctgtcctcat---attgtgacttgtccatctatttctatgacagggatgtgagaaattttggaccaatgttccttcctt |
10503761 |
T |
|
| Q |
179 |
ttatacctttctactaa |
195 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
10503760 |
ttatacctttcttctaa |
10503744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 201
Target Start/End: Complemental strand, 10531989 - 10531868
Alignment:
| Q |
77 |
catacctgaaactggaacacaacttgttctcatgatattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttcc |
176 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| ||||| |||| | ||||| ||||||||||||||||| |||||||||||| | |||||||| |
|
|
| T |
10531989 |
catacctgaaacgggaacacaacttgtcttcat---attgtaacttgcttgtttattattatgacagggatgtgagaaattttggaccaattttccttcc |
10531893 |
T |
|
| Q |
177 |
ttttatacctttctactaacaatgg |
201 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
10531892 |
ttttatacctttcttctaacaatgg |
10531868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 10086352 - 10086273
Alignment:
| Q |
111 |
atattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttct |
190 |
Q |
| |
|
||||||||| |||| ||||||| | ||||||||| ||| ||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10086352 |
atattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaatgttccttccttttatacctttct |
10086273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 10193272 - 10193193
Alignment:
| Q |
111 |
atattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttct |
190 |
Q |
| |
|
||||||||| |||| ||||||| | ||||||||| ||| ||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10193272 |
atattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaatgttccttccttttatacctttct |
10193193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 10680731 - 10680666
Alignment:
| Q |
136 |
tatgacagggatgtgagcaattttggaccactgttccttccttttatacctttctactaacaatgg |
201 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| |||||||||| |
|
|
| T |
10680731 |
tatgacagggatgtgagaaattttggaccgatgttcattccttttatacctttcttctaacaatgg |
10680666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 8585531 - 8585578
Alignment:
| Q |
126 |
catttatatatatgacagggatgtgagcaattttggaccactgttcct |
173 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
8585531 |
catttatatttatgacaggtatgtgagcaatgttggaccaatgttcct |
8585578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 26910049 - 26909975
Alignment:
| Q |
127 |
atttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttctactaacaatgg |
201 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| |
|
|
| T |
26910049 |
atttatttgtatgacagggatgtgagcaattttggaccaatgttccttccttttgtacctttcttctaacaatgg |
26909975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 17849815 - 17849899
Alignment:
| Q |
111 |
atattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttctactaa |
195 |
Q |
| |
|
|||||||||||| ||| | || | |||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| |
|
|
| T |
17849815 |
atattgtgacttggtcctcaatttctatgacagggatgtgagcaattttggaccaatgttcctgccttttatacctttcttctaa |
17849899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 44954552 - 44954631
Alignment:
| Q |
111 |
atattgtgacttcgtcatttatatatatgacagggatgtgagcaattttggaccactgttccttccttttatacctttct |
190 |
Q |
| |
|
|||||||||||| | ||| ||| | ||||||| | || | ||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
44954552 |
atattgtgacttggccatctatttctatgacatgaattttagcaattttggaccaatgttccttccttctatacctttct |
44954631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University