View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9950_low_9 (Length: 229)
Name: NF9950_low_9
Description: NF9950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9950_low_9 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 8240134 - 8240356
Alignment:
| Q |
7 |
cttatagtatatatacatagcattagtaaacggtttcaaaagcatatatattcttttattctttaataactaacatcgcagagaaaccatgtgttgtttg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8240134 |
cttatagtatatatacatagcattagtaaacggttccaaaagcatatatattattttattctttaataactaacatcgcagagaaaccatgtgttgtttg |
8240233 |
T |
|
| Q |
107 |
tgttgtttaaatagtgtattaggtcaaaccgattcaattggatgcttccctcaaccattattggctcttgattgttggatttgaattgttcctttttagt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8240234 |
tgttgtttaaatagtgtattaggtcaaaccgattcaattggatgcttccctcaaccattattggcccttgattgttggatttgaattgttcctttttagt |
8240333 |
T |
|
| Q |
207 |
aatccatagatatacaaagtcta |
229 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
8240334 |
aatcgatagatatacaaagtcta |
8240356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University