View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9951_high_11 (Length: 330)
Name: NF9951_high_11
Description: NF9951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9951_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 318
Target Start/End: Complemental strand, 26822894 - 26822596
Alignment:
| Q |
20 |
gaaataaagtgttcttttagtggtagtaattattaattgtccactcaaaaataattattaatagtgaatgattgataggttaaggatggggtaaagtttg |
119 |
Q |
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| T |
26822894 |
gaaataaagtgttcttttagtggtagtaattattaattgtccactcaaaaataattattaatagtgaatgattgataggttaaggatggggtaaagtttg |
26822795 |
T |
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| Q |
120 |
tattaaaggtgattgtaacatgtgaaccaaatttttcttcttcttcaggaattggtacaggaagaatgccgaagatggcgaaacaaaggtgtgaacataa |
219 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26822794 |
tattaaaggtgattgtaacatgtgaaccaattttttcttcttcttcaggaattggtacaggaagaatgccgtagatggcgaaacaaaggtgtgaacataa |
26822695 |
T |
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| Q |
220 |
agtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgccatct |
318 |
Q |
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| T |
26822694 |
agtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgccatct |
26822596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 165 - 318
Target Start/End: Complemental strand, 26786108 - 26785955
Alignment:
| Q |
165 |
caggaattggtacaggaagaatgccgaagatggcgaaacaaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctc |
264 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26786108 |
caggagttggtacaggaagaatgccgtagatggcgaaacaaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctc |
26786009 |
T |
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| Q |
265 |
taaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgccatct |
318 |
Q |
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| T |
26786008 |
taaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgccatct |
26785955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 165 - 318
Target Start/End: Complemental strand, 26791848 - 26791695
Alignment:
| Q |
165 |
caggaattggtacaggaagaatgccgaagatggcgaaacaaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctc |
264 |
Q |
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||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26791848 |
caggagtttgtacaggaagaatgccgtagatggcgaaacaaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctc |
26791749 |
T |
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| Q |
265 |
taaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgccatct |
318 |
Q |
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| T |
26791748 |
taaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgccatct |
26791695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 165 - 318
Target Start/End: Complemental strand, 26832826 - 26832673
Alignment:
| Q |
165 |
caggaattggtacaggaagaatgccgaagatggcgaaacaaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctc |
264 |
Q |
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||||| |||||||| | ||||||||| |||||| ||| |||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| |
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| T |
26832826 |
caggagttggtacaagtagaatgccgtagatggagaagcaaaggtgtgaatataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcat |
26832727 |
T |
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| Q |
265 |
taaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgccatct |
318 |
Q |
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|||||||||||||||||||||| |||| ||||||||| |||||||| |||| |
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| T |
26832726 |
taaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttgctatct |
26832673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 318
Target Start/End: Original strand, 41546228 - 41546333
Alignment:
| Q |
213 |
aacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttg |
312 |
Q |
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|||||||||||||| | ||||| || |||||||| ||||||||||||||||| || || |||||||| ||||| ||||| || ||||| ||||||| |
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| T |
41546228 |
aacataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttg |
41546327 |
T |
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| Q |
313 |
ccatct |
318 |
Q |
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|||||| |
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| T |
41546328 |
ccatct |
41546333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 286
Target Start/End: Original strand, 41917421 - 41917525
Alignment:
| Q |
182 |
agaatgccgaagatggcgaaacaaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaa |
281 |
Q |
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|||||||| ||||||| || |||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| || ||| |||| || |||||||| |
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| T |
41917421 |
agaatgccaaagatgggcaagcaaaggagtgaatataaagtatgaagttagggacaatagaaatggatacaaagcaggggctttaaaagaaggaatgaag |
41917520 |
T |
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| Q |
282 |
catag |
286 |
Q |
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||||| |
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| T |
41917521 |
catag |
41917525 |
T |
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