View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9951_high_17 (Length: 241)
Name: NF9951_high_17
Description: NF9951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9951_high_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 6836796 - 6836593
Alignment:
| Q |
19 |
acctttgtgatacaatatgtcgctgtaattagcattttccaaattgaaatgttgaatgtgcatgcttttattttctgtgcatgcttttatttgctttgca |
118 |
Q |
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| T |
6836796 |
acctttgtgatacaatatgtcgctgtaattagcattttccaaattgaaatgttgaatgtgcat-------------------gcttttatttgctttgct |
6836716 |
T |
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| Q |
119 |
gacatttatttatgtgcacgttgaatttgcatgtatgctttttgattgagaaaatcagattatcaacaataattaacaataagattataagataatttag |
218 |
Q |
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| T |
6836715 |
gacatttatttatgtgcacgttgaatttgcatgtatgctttttgattgagaaaatcagattatcaacaataattaacaataagattataagataatttag |
6836616 |
T |
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| Q |
219 |
ggaagtaatttaggagaacttag |
241 |
Q |
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|||||||||||||||||| |||| |
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| T |
6836615 |
ggaagtaatttaggagaatttag |
6836593 |
T |
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