View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9951_high_4 (Length: 414)
Name: NF9951_high_4
Description: NF9951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9951_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 23 - 402
Target Start/End: Complemental strand, 39597273 - 39596898
Alignment:
| Q |
23 |
agctactatgtggagcttctaaatatcacgttgtttttgcattggactgcaagaattacaagtctaacgctaaaccaaacataggctaaatcctcaacaa |
122 |
Q |
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| T |
39597273 |
agctactatgtggagcttctaaatatcacgttgtttttgcattggactgcaagaattacaagtctaacgctaaaccaaacataggctaaatcctcaacaa |
39597174 |
T |
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| Q |
123 |
caacaactatgaagttaacaacaatgtctttttccataaggtagaatctactacaaggatcaatcatgtgatgcatttaggtcaaaagataaaccattcc |
222 |
Q |
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| T |
39597173 |
caacaactatgaagttaacaacaatgtctttttccataaggtagaatctactacaaggatcaatcatgtgatgtatttaggtcaaaagataaaccattcc |
39597074 |
T |
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| Q |
223 |
catttgaattataataatcaatgcaatcata-nnnnnnnnaaagnnnnnnncagaaagagcatagcaacttactgatcgagtaaaccatcaacatagttc |
321 |
Q |
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| T |
39597073 |
catttgaattataataatcaatgcaatcatattttttttaaaagaaaaaaacagaaagagcatagcaacttactgatcgagtaaaccatcaacctagt-- |
39596976 |
T |
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| Q |
322 |
ctgattttgtatgacaatctcgaataggattttgataagtcactatcattttaacaagttatactatcattttggtcccta |
402 |
Q |
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| T |
39596975 |
---attttgtatgacaatctcgaatagggttttgacaagtcactatcattttaacaagttatactatcattttggtcccta |
39596898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 2378318 - 2378403
Alignment:
| Q |
23 |
agctactatgtggagcttctaaatatcacgttg--tttttgcattggactgcaagaattacaagtctaacgctaaaccaaacatag |
106 |
Q |
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| T |
2378318 |
agctactatgtggagcttctaaaaatcacattggttttttgcatcgggacgcgataattacaagtctagcgctaaaccaaacatag |
2378403 |
T |
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