View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9951_high_9 (Length: 349)
Name: NF9951_high_9
Description: NF9951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9951_high_9 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 6 - 331
Target Start/End: Complemental strand, 9838685 - 9838360
Alignment:
| Q |
6 |
cttttagtttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctat |
105 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| | || ||||||||| ||| ||||||||||||||||||||||||||||||||| | | || |||| |
|
|
| T |
9838685 |
cttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagctatcacacatgatcttcatctgggaattgatctctttgtaaaaactat |
9838586 |
T |
|
| Q |
106 |
taaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgag |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9838585 |
taaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgag |
9838486 |
T |
|
| Q |
206 |
caaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9838485 |
caaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcc |
9838386 |
T |
|
| Q |
306 |
tgaagattgagcatggttgcttgtaa |
331 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
9838385 |
tgaagattgagcatggttgcttgtaa |
9838360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 6 - 331
Target Start/End: Complemental strand, 9849563 - 9849238
Alignment:
| Q |
6 |
cttttagtttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctat |
105 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| | || ||||||||| ||| ||||||||||||||||||||||||||||||||| | | || |||| |
|
|
| T |
9849563 |
cttttagtttgcaaaccaagtatatctttattctgtgcataaagttgcaagctatcacacatgatcttcatctgggaattgatctctttgtaaaaactat |
9849464 |
T |
|
| Q |
106 |
taaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgag |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9849463 |
taaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgag |
9849364 |
T |
|
| Q |
206 |
caaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9849363 |
caaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcc |
9849264 |
T |
|
| Q |
306 |
tgaagattgagcatggttgcttgtaa |
331 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
9849263 |
tgaagattgagcatggttgcttgtaa |
9849238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 10077089 - 10076765
Alignment:
| Q |
7 |
ttttagtttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctatt |
106 |
Q |
| |
|
|||||||||||| || ||||| |||||| ||| | |||| | ||||| |||||||||||||||||| | || |||||||||||| | |||||||||| |
|
|
| T |
10077089 |
ttttagtttgcagaccaagtacatctttattctgtgcaaacaattgcaacctttcacacatgatcttcgtttgagaattgatctctttgtagaagctatt |
10076990 |
T |
|
| Q |
107 |
aaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgagc |
206 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10076989 |
aaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcttgtgcattctccaccttgcatcgcagtgaatcgtaactgatttcgttgagc |
10076890 |
T |
|
| Q |
207 |
aaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcct |
306 |
Q |
| |
|
|| ||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10076889 |
aagtcctcggcatcaaagacagcatctttcaagttatcaagccactgtctgacatggggattgctgatctgcttctcctctgcatcatctagtacagcct |
10076790 |
T |
|
| Q |
307 |
gaagattgagcatggttgcttgtaa |
331 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
10076789 |
gaagattgagcatggttgtttgtaa |
10076765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 318
Target Start/End: Complemental strand, 10580422 - 10580113
Alignment:
| Q |
9 |
ttagtttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctattaa |
108 |
Q |
| |
|
||||||||||||| ||| | |||||| ||| |||| | ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10580422 |
ttagtttgcaaaccaaggacatctttatgatttgcaaacaattgcaggttttcacacatgatcttcatctgggaattgatctctctatagaagctattaa |
10580323 |
T |
|
| Q |
109 |
aaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgagcaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10580322 |
aaggagaagaaaggaagttccacacctgattagttttgttttgagcttgtgtattctccaccttgcatcgcagggaatcgtaactgatttcattgagcaa |
10580223 |
T |
|
| Q |
209 |
atcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcctga |
308 |
Q |
| |
|
||||||||||||| || | |||||||||||| ||||||||| |||||||| ||||| ||||||||||||||||||||||||| || ||| | ||| |
|
|
| T |
10580222 |
gtcctcagcatcaatgatagcatctttcaagtcatcaagccatagtttgacagcaggattattgatctgcttctcctctgcatcatccagcacaacttga |
10580123 |
T |
|
| Q |
309 |
agattgagca |
318 |
Q |
| |
|
||| |||||| |
|
|
| T |
10580122 |
agagtgagca |
10580113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 10364038 - 10364368
Alignment:
| Q |
1 |
ttgtgcttttagtttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10364038 |
ttgtgcttttagtttgcaaacgaagtatatcttttctcttttcaaaatgttgcaggctttcacacatgatcttcatctgggaattgatctctctatagaa |
10364137 |
T |
|
| Q |
101 |
gctattaaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcg |
200 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||| || ||||| ||||| | | |||||| |||||||||||||||| |||||||||||| |
|
|
| T |
10364138 |
gctattgaaaggagataaaaggaagttccacacctgattacttctgtttccagcttgtttactctccattgtgcatcgcagggaatcataactgatttcg |
10364237 |
T |
|
| Q |
201 |
ttgagcaaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaa |
300 |
Q |
| |
|
| ||||||||||| |||||||||||| ||||||||||| ||||||||| ||||||||| |||||| ||||||||||||| ||||| ||||| || | |
|
|
| T |
10364238 |
tgaagcaaatcctcggcatcaaagacagcatctttcaagccatcaagccattgtttgacagcaggattgttgatctgcttctcttctgcgtcatccagca |
10364337 |
T |
|
| Q |
301 |
cagcctgaagattgagcatggttgcttgtaa |
331 |
Q |
| |
|
|| | |||||| |||||| |||| |||||| |
|
|
| T |
10364338 |
caacttgaagagtgagcagtgttgtttgtaa |
10364368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 6 - 318
Target Start/End: Original strand, 10376090 - 10376402
Alignment:
| Q |
6 |
cttttagtttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctat |
105 |
Q |
| |
|
||||||||||||| || |||||||||||| || | |||| | ||||||||| |||||||||| |||||| || |||||||||||||| ||||| | | |
|
|
| T |
10376090 |
cttttagtttgcagaccaagtatatctttatactgtgcaaagaattgcaggctatcacacatgaccttcatttgagaattgatctctctgtagaaggtgt |
10376189 |
T |
|
| Q |
106 |
taaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgag |
205 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
10376190 |
taaaaggagaagaaaggaagttcaacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcattgag |
10376289 |
T |
|
| Q |
206 |
caaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcc |
305 |
Q |
| |
|
||| |||||||||||||||| | |||||||||||| ||||||||| || |||||| |||||| ||||||||||||||||||||||||| || ||| | |
|
|
| T |
10376290 |
caagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatccagcacaact |
10376389 |
T |
|
| Q |
306 |
tgaagattgagca |
318 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
10376390 |
tgaagagtgagca |
10376402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 6 - 316
Target Start/End: Original strand, 10434289 - 10434599
Alignment:
| Q |
6 |
cttttagtttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctat |
105 |
Q |
| |
|
||||| ||||||| || |||||||||||| ||| | |||||||||||| ||||||||||||||||||||| || |||||||||||||| |||| |||| |
|
|
| T |
10434289 |
cttttggtttgcagaccaagtatatctttattctgtgcaaaaagttgcaagctttcacacatgatcttcatttgagaattgatctctctgtagaaactat |
10434388 |
T |
|
| Q |
106 |
taaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgag |
205 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||| | || ||||||||||||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
10434389 |
taaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcatgtgtattctccaccttggatcgaagggaatcataactgatttcgttgag |
10434488 |
T |
|
| Q |
206 |
caaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcc |
305 |
Q |
| |
|
||| ||||| |||||||||||| |||||||||||| ||||||||| ||||||||| || ||| ||||||||||||||||||||||||| || ||| | |
|
|
| T |
10434489 |
caagtcctcggcatcaaagacagcatctttcaagtcatcaagccattgtttgacagcaggtttgttgatctgcttctcctctgcatcatccagcacaact |
10434588 |
T |
|
| Q |
306 |
tgaagattgag |
316 |
Q |
| |
|
|||||| |||| |
|
|
| T |
10434589 |
tgaagagtgag |
10434599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 7 - 318
Target Start/End: Complemental strand, 10088613 - 10088302
Alignment:
| Q |
7 |
ttttagtttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctatt |
106 |
Q |
| |
|
|||||||||||| || |||||||||||| ||| | |||| | ||||| ||||||||||||||||||||| || |||||||||||||| |||||||||| |
|
|
| T |
10088613 |
ttttagtttgcagaccaagtatatctttattctgtgcaaacaattgcaagctttcacacatgatcttcatttgagaattgatctctctgtagaagctatt |
10088514 |
T |
|
| Q |
107 |
aaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgagc |
206 |
Q |
| |
|
||||||||| |||||||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| ||||| |
|
|
| T |
10088513 |
aaaaggagatgaaaggaagttcatcacctgataacttttgttttgagcttgtgcattctccaccttgcatcgaagggaatcataactgatttcgctgagc |
10088414 |
T |
|
| Q |
207 |
aaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcct |
306 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||| ||||||||| |||||||| |||||| |||||||||||||||| |||||||| || ||| | | |
|
|
| T |
10088413 |
aagtcctcagcatcaaagacagcatctttcaagtcatcaagccatagtttgacagcaggattgttgatctgcttctcctccgcatcatccagcacaactt |
10088314 |
T |
|
| Q |
307 |
gaagattgagca |
318 |
Q |
| |
|
||||| |||||| |
|
|
| T |
10088313 |
gaagagtgagca |
10088302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 7 - 318
Target Start/End: Complemental strand, 10195496 - 10195185
Alignment:
| Q |
7 |
ttttagtttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctatt |
106 |
Q |
| |
|
|||||||||||| || |||||||||||| ||| | |||| | ||||| ||||||||||||||||||||| || |||||||||||||| |||||||||| |
|
|
| T |
10195496 |
ttttagtttgcagaccaagtatatctttattctgtgcaaacaattgcaagctttcacacatgatcttcatttgagaattgatctctctgtagaagctatt |
10195397 |
T |
|
| Q |
107 |
aaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgagc |
206 |
Q |
| |
|
||||||||| |||||||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| ||| | |
|
|
| T |
10195396 |
aaaaggagatgaaaggaagttcatcacctgataacttttgttttgagcttgtgcattctccaccttgcatcgaagggaatcataactgatttcgctgaac |
10195297 |
T |
|
| Q |
207 |
aaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcct |
306 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||| ||||||||| |||||||| |||||| |||||||||||||||| |||||||| || ||| | | |
|
|
| T |
10195296 |
aagtcctcagcatcaaagacagcatctttcaagtcatcaagccatagtttgacagcaggattgttgatctgcttctcctccgcatcatccagcacaactt |
10195197 |
T |
|
| Q |
307 |
gaagattgagca |
318 |
Q |
| |
|
||||| |||||| |
|
|
| T |
10195196 |
gaagagtgagca |
10195185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 8861109 - 8860805
Alignment:
| Q |
7 |
ttttagtttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctatt |
106 |
Q |
| |
|
||||||||||||||| ||| |||||||| | | | |||| ||||| ||| ||||||||||||||||| ||||||||||||||||| ||||| | || |
|
|
| T |
8861109 |
ttttagtttgcaaaccaaggatatctttatgttgtgcgaaaatttgcaagctatcacacatgatcttcatttgggaattgatctctctgtagaaggtgtt |
8861010 |
T |
|
| Q |
107 |
aaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgagc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||| | ||||| |||||||||| ||||||| |
|
|
| T |
8861009 |
aaaaggagaagaaaggaagttccacacctgattagttttgtttgcagcttgtgtatcctccaccttgcatcgtaatgaatcataactgatttggttgagc |
8860910 |
T |
|
| Q |
207 |
aaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcct |
306 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| ||||||||| ||||||||| ||||| ||||||||||||||||||||||||| || ||||| | |
|
|
| T |
8860909 |
aaatcctcagcatcaaagagagcatctttcaagtcatcaagccattgtttgacagcacgattgttgatctgcttctcctctgcatcatccagcacagctt |
8860810 |
T |
|
| Q |
307 |
gaaga |
311 |
Q |
| |
|
||||| |
|
|
| T |
8860809 |
gaaga |
8860805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 10889129 - 10888825
Alignment:
| Q |
7 |
ttttagtttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctatt |
106 |
Q |
| |
|
||||||||||||||| ||| |||||||| | | |||||||||||| ||| | ||||||||||||||| ||||||||||||||||| ||||| | || |
|
|
| T |
10889129 |
ttttagtttgcaaaccaaggatatctttatgttgtgcaaaaagttgcaagctattacacatgatcttcatttgggaattgatctctctgtagaaggtgtt |
10889030 |
T |
|
| Q |
107 |
aaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgagc |
206 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||| | || || |||||||||||||||||||| || || ||||| |||| ||| ||| |
|
|
| T |
10889029 |
aaaaggagaagaaaggaagctccacacctgactagttttgtttgtggattgtgtattctccaccttgcatcgcaatgattcataactaatttggttcagc |
10888930 |
T |
|
| Q |
207 |
aaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcct |
306 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||| ||||||||| ||||||||| | ||| |||||||||||||||| |||||||| || ||||| | |
|
|
| T |
10888929 |
aaatcctccgcatcaaagacagcatctttcaagtcatcaagccattgtttgacagcacggttgttgatctgcttctcctcagcatcatccagcacagctt |
10888830 |
T |
|
| Q |
307 |
gaaga |
311 |
Q |
| |
|
||||| |
|
|
| T |
10888829 |
gaaga |
10888825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 45 - 304
Target Start/End: Original strand, 11160301 - 11160560
Alignment:
| Q |
45 |
aaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctattaaaaggagaagaaaggaagttccacacctgattagttt |
144 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| |||||||||||||||||| ||||| | ||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
11160301 |
aaaagttgcaagctatcacacatgatcttcatttgggaattgatctctctatagaaggtgttaaaaggagaagaaaggaagctccacacctgactagttt |
11160400 |
T |
|
| Q |
145 |
tgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatcaaagacaacatctttcaagttatc |
244 |
Q |
| |
|
||||| | || || ||||||||||||||||||||| || || ||||| |||| || ||||||||||| |||||||||||| |||||||||||| ||| |
|
|
| T |
11160401 |
tgtttgtggattgtgtattctccaccttgcatcgcagtgattcataactaatttgattcagcaaatcctcggcatcaaagacagcatctttcaagtcatc |
11160500 |
T |
|
| Q |
245 |
aagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagc |
304 |
Q |
| |
|
|||||| ||||||||| | ||| |||||| |||||||||||||||||| || ||||| |
|
|
| T |
11160501 |
aagccattgtttgacagcacggttgttgatctacttctcctctgcatcatccagcacagc |
11160560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 6 - 324
Target Start/End: Complemental strand, 11769058 - 11768740
Alignment:
| Q |
6 |
cttttagtttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctat |
105 |
Q |
| |
|
|||||||||||||||| | ||||||||| | | | |||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| | | | |
|
|
| T |
11769058 |
cttttagtttgcaaacctaatatatctttattttgtgcaaaaagttgcaggctttcacacatgatcttcatatgggaattgatctctccatagatgtttt |
11768959 |
T |
|
| Q |
106 |
taaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgag |
205 |
Q |
| |
|
||||||| || ||||| ||||||||||||||||||||||||||| ||||| | ||||||| ||||||||| ||||| || ||||| |||| | ||| |
|
|
| T |
11768958 |
taaaaggggatgaaagtaagttccacacctgattagttttgtttctagcttgtttcttctccatcttgcatcggagggagtcataacttatttgatcgag |
11768859 |
T |
|
| Q |
206 |
caaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcc |
305 |
Q |
| |
|
||||||||||||||||||| | | |||||||||| ||||||||| ||||||||| ||||| | |||||||||||||| |||||||| || |||||| |
|
|
| T |
11768858 |
taaatcctcagcatcaaagatagcgtctttcaagtcatcaagccattgtttgacagcaagattgttcatctgcttctcctccgcatcatccagtacagcc |
11768759 |
T |
|
| Q |
306 |
tgaagattgagcatggttg |
324 |
Q |
| |
|
||||| |||||| ||||| |
|
|
| T |
11768758 |
tgaagtgtgagcagggttg |
11768740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 6 - 311
Target Start/End: Original strand, 11149099 - 11149404
Alignment:
| Q |
6 |
cttttagtttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctat |
105 |
Q |
| |
|
|||||||||||||||| ||| |||||||| | | | |||||| ||||||| | ||||||||| ||||||| ||||||||||||||||| ||| | | | |
|
|
| T |
11149099 |
cttttagtttgcaaaccaaggatatctttgttttgtgcaaaaatttgcaggttgtcacacatggtcttcatttgggaattgatctctctgtagatggtgt |
11149198 |
T |
|
| Q |
106 |
taaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgag |
205 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||| | || || ||||||||||||||||||||| || || ||||| |||| || || |
|
|
| T |
11149199 |
taaaaggagaagaaaggaagctccacacctgactagttttgtttgtggattgtgtattctccaccttgcatcgcagtgattcataactaatttgattcag |
11149298 |
T |
|
| Q |
206 |
caaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcc |
305 |
Q |
| |
|
||||||||| |||||||||| | |||||||||||| ||||||||| ||||||||| |||||| ||||||||||||| || |||||||| || ||||| |
|
|
| T |
11149299 |
caaatcctcggcatcaaagatagcatctttcaagtcatcaagccattgtttgacagcaggattgttgatctgcttctcatcagcatcatccagcacagct |
11149398 |
T |
|
| Q |
306 |
tgaaga |
311 |
Q |
| |
|
|||||| |
|
|
| T |
11149399 |
tgaaga |
11149404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 6 - 311
Target Start/End: Original strand, 11131271 - 11131576
Alignment:
| Q |
6 |
cttttagtttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctat |
105 |
Q |
| |
|
||||||||||| |||| ||| |||||||| | | | |||||| ||||||| | ||||||||| |||| || |||||||||||||||| | ||| | | | |
|
|
| T |
11131271 |
cttttagtttgtaaaccaaggatatctttgttttgtgcaaaaatttgcaggttgtcacacatggtcttaatttgggaattgatctctccatagatgtttt |
11131370 |
T |
|
| Q |
106 |
taaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgag |
205 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||| || ||||||||||||||||||||| || || ||||| |||| || || |
|
|
| T |
11131371 |
taaaaggagaagaaaggaagttccagacctgattagttttgtttgcagcttgtgtattctccaccttgcatcgcagtgactcataactaatttgattcag |
11131470 |
T |
|
| Q |
206 |
caaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcc |
305 |
Q |
| |
|
||||||||| |||||||||| | |||||||||||| ||||| ||| | ||||||| | ||| |||||||||||||||| |||||||| || ||||| |
|
|
| T |
11131471 |
caaatcctccgcatcaaagatagcatctttcaagtcatcaacccattttttgacagcacggttgttgatctgcttctcctcagcatcatccagcacagct |
11131570 |
T |
|
| Q |
306 |
tgaaga |
311 |
Q |
| |
|
|||||| |
|
|
| T |
11131571 |
tgaaga |
11131576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 203 - 329
Target Start/End: Complemental strand, 10085735 - 10085609
Alignment:
| Q |
203 |
gagcaaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaaca |
302 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| |
|
|
| T |
10085735 |
gagcaaatcttcagcatcaaagaaaacatctttcaagttatcaagccactgtttgacatggggattactgatctgcttctcctttgcatcatctagtaca |
10085636 |
T |
|
| Q |
303 |
gcctgaagattgagcatggttgcttgt |
329 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
10085635 |
gcctgaagattgagcatggttgtttgt |
10085609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 203 - 329
Target Start/End: Complemental strand, 10192655 - 10192529
Alignment:
| Q |
203 |
gagcaaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaaca |
302 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| |
|
|
| T |
10192655 |
gagcaaatcttcagcatcaaagaaaacatctttcaagttatcaagccactgtttgacatggggattactgatctgcttctcctttgcatcatctagtaca |
10192556 |
T |
|
| Q |
303 |
gcctgaagattgagcatggttgcttgt |
329 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
10192555 |
gcctgaagattgagcatggttgtttgt |
10192529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 43 - 311
Target Start/End: Complemental strand, 13332691 - 13332423
Alignment:
| Q |
43 |
caaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctattaaaaggagaagaaaggaagttccacacctgattagt |
142 |
Q |
| |
|
||||||||||||| |||| |||||| |||||||| || ||||||||||||| | ||| | ||||||||||| |||| || |||||| ||||||||||| |
|
|
| T |
13332691 |
caaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggagacgaaaagaggttccaaacctgattagt |
13332592 |
T |
|
| Q |
143 |
tttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatcaaagacaacatctttcaagtta |
242 |
Q |
| |
|
|||||| ||||| | ||||||||||| ||||||||||| |||||| |||||| ||| |||||||||||||||||| ||| ||||||||| | | |
|
|
| T |
13332591 |
catgttttcagcttgtttcttctccaccttacatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttcagctga |
13332492 |
T |
|
| Q |
243 |
tcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcctgaaga |
311 |
Q |
| |
|
|| | ||| ||||||||| | ||| |||| ||||||| ||||||||||| || || ||||||||| |
|
|
| T |
13332491 |
tccaaccattgtttgacagcagtgttggtgatttgcttctgttctgcatcatccagcaccgcctgaaga |
13332423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 43 - 221
Target Start/End: Complemental strand, 13160767 - 13160589
Alignment:
| Q |
43 |
caaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctattaaaaggagaagaaaggaagttccacacctgattagt |
142 |
Q |
| |
|
||||||||||||| |||| |||||| |||||||| || ||||||||||||| | ||| | ||||||||||| |||| || |||||| ||||||||||| |
|
|
| T |
13160767 |
caaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggagatgaaaagaggttccaaacctgattagt |
13160668 |
T |
|
| Q |
143 |
tttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatca |
221 |
Q |
| |
|
|||||| ||||| | ||||||||| | ||||||||||| |||||| |||||| ||| |||||||||||||||||| |
|
|
| T |
13160667 |
catgttttcagcttgtttcttctccaccgtacatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatca |
13160589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 43 - 221
Target Start/End: Complemental strand, 13289452 - 13289274
Alignment:
| Q |
43 |
caaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctattaaaaggagaagaaaggaagttccacacctgattagt |
142 |
Q |
| |
|
||||||| ||||| |||| |||||| |||||||| || ||||||||||||| | ||| | ||||||||||| |||| || |||||| ||||||||||| |
|
|
| T |
13289452 |
caaaaagctgcagcctttgacacataatcttcatttgtgaattgatctctccatagagagttttaaaaggagatgaaaagaggttccaaacctgattagt |
13289353 |
T |
|
| Q |
143 |
tttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatca |
221 |
Q |
| |
|
|||||| ||||| | ||||||||||| ||||||||||| |||||| |||||| ||| |||||||||||||||||| |
|
|
| T |
13289352 |
catgttttcagcttgtttcttctccaccttacatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatca |
13289274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 43 - 311
Target Start/End: Complemental strand, 13170818 - 13170550
Alignment:
| Q |
43 |
caaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctattaaaaggagaagaaaggaagttccacacctgattagt |
142 |
Q |
| |
|
||||||||||||| |||| |||||| |||||||| || ||||||||||||| | ||| | ||||||||| | |||| || |||||| ||||||||||| |
|
|
| T |
13170818 |
caaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggacatgaaaagaggttccaaacctgattagt |
13170719 |
T |
|
| Q |
143 |
tttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatcaaagacaacatctttcaagtta |
242 |
Q |
| |
|
|||||| || || | ||||||||||| ||||| ||||| |||||| |||||| ||| |||||||||||||||||| ||| ||||||||| | | |
|
|
| T |
13170718 |
catgttttcagattgtatcttctccaccttacatcggagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttcagttga |
13170619 |
T |
|
| Q |
243 |
tcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcctgaaga |
311 |
Q |
| |
|
|| | ||| ||||||||| | ||| |||| ||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
13170618 |
tccatccattgtttgacagcagtgttggtgatttgcttctgttctgcatcatcaagaaccgcctgaaga |
13170550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 51 - 221
Target Start/End: Complemental strand, 13343868 - 13343698
Alignment:
| Q |
51 |
tgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctattaaaaggagaagaaaggaagttccacacctgattagttttgtttt |
150 |
Q |
| |
|
||||| |||| |||||| |||||||| || ||||||||||||| | ||| | ||||| ||||| |||| || |||||| ||||||||||| |||||| |
|
|
| T |
13343868 |
tgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaacggagacgaaaagaggttccaaacctgattagtcatgtttt |
13343769 |
T |
|
| Q |
151 |
gagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatca |
221 |
Q |
| |
|
||||| | ||||||||| | ||||||||||| ||||| |||||| ||| |||||||||||||||||| |
|
|
| T |
13343768 |
cagcttgtttcttctccaccgtacatcgcagggagtcgtagttgatttggttaagcaaatcctcagcatca |
13343698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 162 - 311
Target Start/End: Complemental strand, 10126584 - 10126435
Alignment:
| Q |
162 |
ttctccaccttgcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacat |
261 |
Q |
| |
|
||||||| ||||||||| |||| || ||| ||||||| ||||||||||||||||||||| ||| ||||||| || ||| ||||| ||||||| |
|
|
| T |
10126584 |
ttctccagcttgcatcgtagggcattgtagctgatttgattgagcaaatcctcagcatcatagattgcatcttttaaccgatccagccattgtttgattc |
10126485 |
T |
|
| Q |
262 |
ggggattgctgatctgcttctcctctgcatcatctagaacagcctgaaga |
311 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||| ||| ||| |||| |
|
|
| T |
10126484 |
tgggtttgaggatctgcttctcctctgcatcatctagtacaacctcaaga |
10126435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 311
Target Start/End: Complemental strand, 10260354 - 10260205
Alignment:
| Q |
162 |
ttctccaccttgcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacat |
261 |
Q |
| |
|
||||||| ||||||||| |||| || ||| ||||||| ||||||||||||||||||||| ||| ||||||| || ||| | ||| ||||||| |
|
|
| T |
10260354 |
ttctccagcttgcatcgtagggcattgtagctgattttattgagcaaatcctcagcatcatagattgcatcttttaaccgatccaaccattgtttgattc |
10260255 |
T |
|
| Q |
262 |
ggggattgctgatctgcttctcctctgcatcatctagaacagcctgaaga |
311 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||| ||| ||| |||| |
|
|
| T |
10260254 |
tgggtttgaggatctgcttctcctctgcatcatctagtacaacctcaaga |
10260205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 260
Target Start/End: Complemental strand, 10527024 - 10526929
Alignment:
| Q |
165 |
tccaccttgcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgaca |
260 |
Q |
| |
|
||||||||||| ||||| | |||||| |||||| || |||||||| ||||||||||| | |||||||||||| || |||||| ||||||||| |
|
|
| T |
10527024 |
tccaccttgcaccgcagagcatcgtagctgattaagtcaagcaaatcttcagcatcaaatattgcatctttcaagtcatgaagccattgtttgaca |
10526929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 10517114 - 10517058
Alignment:
| Q |
204 |
agcaaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgaca |
260 |
Q |
| |
|
|||||||| |||| |||||||| |||||||||||| ||||||||| ||||||||| |
|
|
| T |
10517114 |
agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgaca |
10517058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 10541600 - 10541544
Alignment:
| Q |
204 |
agcaaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgaca |
260 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||| ||||||||| || |||||| |
|
|
| T |
10541600 |
agcaaatcttcagcatcaaagattgcatctttcaagtcatcaagccattgcttgaca |
10541544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 11782422 - 11782478
Alignment:
| Q |
204 |
agcaaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgaca |
260 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||| ||||||||| ||||||||| |
|
|
| T |
11782422 |
agcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgaca |
11782478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 50048 - 50360
Alignment:
| Q |
1 |
ttgtgcttttagtttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
50048 |
ttgtgcttttagtttgcaaacgaagtatatcttttcttttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctccatagt- |
50146 |
T |
|
| Q |
101 |
gctattaaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcg |
200 |
Q |
| |
|
| ||||||| ||| |||| ||||||| |||||||| | ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
50147 |
--ttttaaaagaagatgaaaagaagttcatcacctgataaattttgctttgagcttttgcattctccaccttgcatcgcagggaatcataactgatttcg |
50244 |
T |
|
| Q |
201 |
ttgagcaaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaa |
300 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||| ||||||||| |||||||| |||||| |||||||||||||||| |||||||| || | |
|
|
| T |
50245 |
ctgagcaagtcctcagcatcaaagacagcatctttcaagtcatcaagccatagtttgacagcaggattgttgatctgcttctcctcagcatcatccagca |
50344 |
T |
|
| Q |
301 |
cagcctgaagattgag |
316 |
Q |
| |
|
|| | |||||| |||| |
|
|
| T |
50345 |
caacttgaagagtgag |
50360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 6 - 318
Target Start/End: Complemental strand, 26906721 - 26906409
Alignment:
| Q |
6 |
cttttagtttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctat |
105 |
Q |
| |
|
|||||||||||||||| ||| |||||||| | | |||| | |||||||||||||||||| |||||||| || |||||||||||||| ||||||||| |
|
|
| T |
26906721 |
cttttagtttgcaaaccaaggatatctttatgttgtgcaaacaattgcaggctttcacacattatcttcatttgagaattgatctctctgtagaagctat |
26906622 |
T |
|
| Q |
106 |
taaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgag |
205 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||||| || |||||| || ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
26906621 |
taaaaggagatgaaaggaagttcaacacctgattagttttgttttgagcttgtgtattctcgactttgcatcgcagggaatcataactaatttcgttgag |
26906522 |
T |
|
| Q |
206 |
caaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcc |
305 |
Q |
| |
|
||| |||||| ||||||||| | |||||||||||| ||||||||| ||||||||| |||||| ||||||| ||||||||||||||||| || ||| || |
|
|
| T |
26906521 |
caagtcctcaacatcaaagatagcatctttcaagtcatcaagccattgtttgacagcaggattgttgatctgtttctcctctgcatcatccagcacaacc |
26906422 |
T |
|
| Q |
306 |
tgaagattgagca |
318 |
Q |
| |
|
|| ||| |||||| |
|
|
| T |
26906421 |
tgcagagtgagca |
26906409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 6 - 316
Target Start/End: Original strand, 44957954 - 44958264
Alignment:
| Q |
6 |
cttttagtttgcaaacgaagtatatcttttctcttttcaaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctat |
105 |
Q |
| |
|
|||||||||| ||||| || ||||||||| || | |||||||||||||| ||||||||| |||||||| || ||||||||||||| | ||||| | | |
|
|
| T |
44957954 |
cttttagtttccaaaccaattatatctttatgctgtgcaaaaagttgcagggattcacacataatcttcatttgagaattgatctctccatagaagtttt |
44958053 |
T |
|
| Q |
106 |
taaaaggagaagaaaggaagttccacacctgattagttttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgag |
205 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||| | ||| || ||||||||| ||||| ||||||||||| || || |||| |||||| |
|
|
| T |
44958054 |
taaaaggagatgaaaggaagttccagacctgattagttttgttggcaacttgtgtattctccactttgcaacgcagggaatcatagctaatttggttgag |
44958153 |
T |
|
| Q |
206 |
caaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcc |
305 |
Q |
| |
|
||||||||| |||||||| | || |||||||| ||||||||| ||||||||| | ||| |||| |||||||||||||||||||| || ||| || |
|
|
| T |
44958154 |
caaatcctcggcatcaaatattgtatttttcaagtcatcaagccattgtttgacagtaaggttggtgatttgcttctcctctgcatcatcaagcacaacc |
44958253 |
T |
|
| Q |
306 |
tgaagattgag |
316 |
Q |
| |
|
|||||| |||| |
|
|
| T |
44958254 |
tgaagagtgag |
44958264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 162 - 295
Target Start/End: Complemental strand, 11484685 - 11484552
Alignment:
| Q |
162 |
ttctccaccttgcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacat |
261 |
Q |
| |
|
||||| ||||||||||||| || ||| || |||||||| || |||||||||||||||||||||| |||||||||| ||||||||| ||||||| | |
|
|
| T |
11484685 |
ttctctaccttgcatcgcaaggcatcatagctgatttcattaagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttgattt |
11484586 |
T |
|
| Q |
262 |
ggggattgctgatctgcttctcctctgcatcatc |
295 |
Q |
| |
|
||| | |||||||||||| ||||||||||| |
|
|
| T |
11484585 |
tgggttgaaggatctgcttctcttctgcatcatc |
11484552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 43 - 316
Target Start/End: Original strand, 31680015 - 31680294
Alignment:
| Q |
43 |
caaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctattaaaaggagaagaaaggaagttccacacctgattagt |
142 |
Q |
| |
|
|||||||||| || |||||| ||| ||||||| |||||||||||||||| | | ||| | | ||||||||| |||||||| ||||| |||||| ||| |
|
|
| T |
31680015 |
caaaaagttggagcctttcaatcatactcttcatttgggaattgatctctccatacaagttttgaaaaggagatgaaaggaaattccaaacctgaccagt |
31680114 |
T |
|
| Q |
143 |
tttgttttgagcttttgcatt------ctccaccttgcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatcaaagacaacatctttc |
236 |
Q |
| |
|
|||||| ||||| || ||| ||||||||||| || ||| |||| |||||||| | |||||||||||||||||||||| | | |||||||| |
|
|
| T |
31680115 |
gatgttttcagcttgtgtattactattctccaccttgcttctaaggcaatcataactgatctggttgagcaaatcctcagcatcatatattgcatctttc |
31680214 |
T |
|
| Q |
237 |
aagttatcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcctgaagattgag |
316 |
Q |
| |
|
|| | ||||||||| ||||||||| | ||||| |||||||||||| ||| |||||||| |||||||| |||||| |||| |
|
|
| T |
31680215 |
aactcatcaagccattgtttgacaggaagattgttgatctgcttcttctcagcatcatcaagaacagcatgaagagtgag |
31680294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 43 - 221
Target Start/End: Original strand, 146221 - 146399
Alignment:
| Q |
43 |
caaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctattaaaaggagaagaaaggaagttccacacctgattagt |
142 |
Q |
| |
|
||||||||||||| |||| |||||| |||||||| || ||||||||||||| | ||| | ||||||||||| |||| || |||||| ||||||||||| |
|
|
| T |
146221 |
caaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggagatgaaaagaggttccaaacctgattagt |
146320 |
T |
|
| Q |
143 |
tttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatca |
221 |
Q |
| |
|
|||||| ||||| | ||||||||| | ||||||||||| |||||| |||||| ||| |||||||||||||||||| |
|
|
| T |
146321 |
catgttttcagcttgtttcttctccaccgtacatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatca |
146399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 43 - 311
Target Start/End: Original strand, 136170 - 136438
Alignment:
| Q |
43 |
caaaaagttgcaggctttcacacatgatcttcatctgggaattgatctctctacagaagctattaaaaggagaagaaaggaagttccacacctgattagt |
142 |
Q |
| |
|
||||||||||||| |||| |||||| |||||||| || ||||||||||||| | ||| | ||||||||| | |||| || |||||| ||||||||||| |
|
|
| T |
136170 |
caaaaagttgcagcctttgacacataatcttcatttgtgaattgatctctccatagagatttttaaaaggacatgaaaagaggttccaaacctgattagt |
136269 |
T |
|
| Q |
143 |
tttgttttgagcttttgcattctccaccttgcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatcaaagacaacatctttcaagtta |
242 |
Q |
| |
|
|||||| || || | ||||||||||| ||||| ||||| |||||| |||||| ||| |||||||||||||||||| ||| ||||||||| | | |
|
|
| T |
136270 |
catgttttcagattgtatcttctccaccttacatcggagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttcagttga |
136369 |
T |
|
| Q |
243 |
tcaagccactgtttgacatggggattgctgatctgcttctcctctgcatcatctagaacagcctgaaga |
311 |
Q |
| |
|
|| | ||| ||||||||| | ||| |||| ||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
136370 |
tccatccattgtttgacagcagtgttggtgatttgcttctgttctgcatcatcaagaaccgcctgaaga |
136438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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