View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9951_low_1 (Length: 572)

Name: NF9951_low_1
Description: NF9951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9951_low_1
NF9951_low_1
[»] chr2 (6 HSPs)
chr2 (1-553)||(6566412-6566966)
chr2 (1-41)||(3714224-3714264)
chr2 (1-58)||(43426622-43426679)
chr2 (1-57)||(5574199-5574255)
chr2 (1-41)||(34248504-34248544)
chr2 (1-57)||(38618187-38618243)
[»] chr1 (13 HSPs)
chr1 (1-58)||(27206753-27206810)
chr1 (1-57)||(31008348-31008404)
chr1 (1-54)||(17490486-17490539)
chr1 (1-57)||(639794-639850)
chr1 (1-57)||(3384218-3384274)
chr1 (1-57)||(31008254-31008310)
chr1 (1-57)||(33604080-33604136)
chr1 (1-57)||(37734862-37734918)
chr1 (1-57)||(48022590-48022646)
chr1 (1-58)||(8258032-8258089)
chr1 (8-57)||(14418153-14418202)
chr1 (5-57)||(4060264-4060316)
chr1 (1-57)||(6065550-6065606)
[»] chr5 (9 HSPs)
chr5 (1-57)||(3851358-3851414)
chr5 (1-57)||(15712210-15712266)
chr5 (1-57)||(23914836-23914892)
chr5 (1-58)||(19531390-19531447)
chr5 (1-50)||(35969218-35969267)
chr5 (1-57)||(3851452-3851508)
chr5 (1-57)||(13157328-13157384)
chr5 (1-57)||(15712116-15712172)
chr5 (1-41)||(37870028-37870068)
[»] chr4 (3 HSPs)
chr4 (1-59)||(52817656-52817714)
chr4 (1-57)||(5281224-5281280)
chr4 (1-57)||(5418604-5418660)
[»] chr3 (13 HSPs)
chr3 (8-57)||(38455160-38455209)
chr3 (6-59)||(41254025-41254078)
chr3 (8-57)||(52168379-52168428)
chr3 (1-57)||(29565104-29565160)
chr3 (1-41)||(33412554-33412594)
chr3 (1-57)||(36362693-36362748)
chr3 (1-41)||(42449116-42449156)
chr3 (1-57)||(50260928-50260984)
chr3 (1-57)||(51617326-51617382)
chr3 (1-57)||(51617420-51617476)
chr3 (1-57)||(52168278-52168334)
chr3 (1-57)||(52315479-52315535)
chr3 (1-57)||(52931762-52931818)
[»] chr8 (8 HSPs)
chr8 (1-57)||(9056110-9056166)
chr8 (1-57)||(14381233-14381289)
chr8 (1-57)||(40098849-40098905)
chr8 (408-470)||(17602932-17602994)
chr8 (1-50)||(37716076-37716125)
chr8 (1-57)||(13211234-13211290)
chr8 (1-57)||(13211328-13211384)
chr8 (1-57)||(40098755-40098811)
[»] chr6 (5 HSPs)
chr6 (1-57)||(21506458-21506514)
chr6 (1-57)||(10258393-10258449)
chr6 (1-57)||(17773590-17773646)
chr6 (1-57)||(21998034-21998090)
chr6 (1-57)||(31536306-31536362)
[»] chr7 (4 HSPs)
chr7 (1-44)||(29498872-29498915)
chr7 (1-43)||(7430973-7431015)
chr7 (1-57)||(34703532-34703588)
chr7 (1-57)||(38238873-38238929)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-57)||(246884-246940)


Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Complemental strand, 6566966 - 6566412
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgtagttatttatgtnnnnnnnnnnnnnnnnccaagttgtaaggaaa 100  Q
    |||||||||| ||||||||||||| |||||| || |||||| ||  || |||||||||||||||||||                ||||||||||||||||    
T  6566966 ttaattaaatatatctaaaaagtgattttttgctcatattagtgaccgaagggtgtagttatttatgtaaaataaaaaacaaaaccaagttgtaaggaaa 6566867  T
Q  101 tgacatactttgtgacaagaatcattatccatatgataaggcattaatgctaaataatcgtgtatttttctttcacttagttgacaaatacacaggatgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6566866 tgacatactttgtgacaagaatcattatccatatgataaggcattaatgctaaataatcgtgtatttttctttcacttagttgacaaatacacag-atgg 6566768  T
Q  201 a-taattgcaaaggtacaagtgactgcggtacgtgtttaacatggttcccgtcacaacatcaaacttacaaacaaaatgatacaatcaaatgctaagcca 299  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6566767 aataattgcaaaggtacaagtgactgcggtacgtgtttaacatggttcccgtcacaacatcaaacttacaaacaaaatgatacaatcaaatgctaagtca 6566668  T
Q  300 tgnnnnnnnn--ctagcagcacaacacaaacctaagaggagaatgacaatcccatctctaaatcctatcaaccaaaataaaatcttatacatatgcttca 397  Q
    |           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6566667 ttttttttctttctagcagcacaacacaaacctaagaggagaatggcaatcccatctctaaatcctatcaaccaaaataaaatcttatacatatgcttca 6566568  T
Q  398 tttatcaagaagcatcaatttgctaacaagaaacttatgacctagacgaggtacaactttgataagaatatctacaacttaaaaattgggtgtcgacatg 497  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6566567 tttatcaagaagcatcaattagctaacaagaaacttatgacctagacgaggtacaactttgataagaatatctacaacttaaaaattgggtgtcgacatg 6566468  T
Q  498 aggtagagagataacatgactgtcataaaccttccgagtaaaatgacatccacttt 553  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  6566467 aggtagagagataacatgattgtcataaaccttccaagtaaaatgacatccacttt 6566412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3714264 - 3714224
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatatta 41  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  3714264 ttaattgaatgtatctaaaaagtggttttttacttatatta 3714224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 43426679 - 43426622
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgtag 58  Q
    |||||| ||||||| |||||||||| ||||||||||||||| ||  || |||||||||    
T  43426679 ttaattgaatgtatttaaaaagtggatttttacttatattagtgaccgaagggtgtag 43426622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5574199 - 5574255
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||| | ||||| ||||||||| ||  |||||||||||    
T  5574199 ttaattgaatgtatctaaaaagtagatttttgcttatattagtgaccggagggtgta 5574255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 34248504 - 34248544
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatatta 41  Q
    |||||| |||||||||||||||||| ||||| |||||||||    
T  34248504 ttaattgaatgtatctaaaaagtggatttttgcttatatta 34248544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38618187 - 38618243
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| ||||||||||| || | | ||||||||||||||||||  |||||||||||    
T  38618187 ttaattgaatgtatctaacaaatagatttttacttatattaatgaccggagggtgta 38618243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 27206810 - 27206753
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgtag 58  Q
    |||||| |||||||||||||||||||||||| ||||||||| ||  ||||||||||||    
T  27206810 ttaattgaatgtatctaaaaagtggttttttgcttatattagtggccggagggtgtag 27206753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 31008348 - 31008404
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||||| ||||| ||||||||||||  |||||||||||    
T  31008348 ttaattgaatgtatctaaaaagtggatttttgcttatattaatgaccggagggtgta 31008404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 17490539 - 17490486
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggt 54  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||  ||||||||    
T  17490539 ttaattaaatgtatctaaaaagtggatttttgcttatattagtgaccggagggt 17490486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 639850 - 639794
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||||| ||||| ||||||||| ||  |||||||||||    
T  639850 ttaattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgta 639794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3384274 - 3384218
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||||  ||||| ||||||||||||  |||||||||||    
T  3384274 ttaattgaatgtatctaaaaagtgaatttttgcttatattaatgaccggagggtgta 3384218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 31008310 - 31008254
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    ||||||||||||||||||||||| | ||||| ||||||||| ||  |||||||||||    
T  31008310 ttaattaaatgtatctaaaaagtagatttttgcttatattagtgaccggagggtgta 31008254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 33604080 - 33604136
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||||| ||||| ||||||||| ||  |||||||||||    
T  33604080 ttaattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgta 33604136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 37734862 - 37734918
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||||| ||||| ||||||||| ||  |||||||||||    
T  37734862 ttaattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgta 37734918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 48022646 - 48022590
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||||| ||||| ||||||||| ||  |||||||||||    
T  48022646 ttaattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgta 48022590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 8258032 - 8258089
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgtag 58  Q
    |||||| |||||||||||||||||  ||||| ||||||||| ||  ||||||||||||    
T  8258032 ttaattgaatgtatctaaaaagtgaatttttgcttatattagtgaccggagggtgtag 8258089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 14418153 - 14418202
Alignment:
Q  8 aatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||||||||||||||  ||||| ||||||||||||  |||||||||||    
T  14418153 aatgtatctaaaaagtgaatttttgcttatattaatgaccggagggtgta 14418202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 4060264 - 4060316
Alignment:
Q  5 ttaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    ||||||||||||||||||| | ||||| ||||||||| ||  |||||||||||    
T  4060264 ttaaatgtatctaaaaagtagatttttgcttatattagtgaccggagggtgta 4060316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 6065550 - 6065606
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||| ||||| ||||| ||||||||| ||  |||||||||||    
T  6065550 ttaattgaatgtatctaaagagtggatttttgcttatattagtgaccggagggtgta 6065606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3851414 - 3851358
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||||| ||||| ||||||||| || ||||||||||||    
T  3851414 ttaattgaatgtatctaaaaagtggatttttgcttatattagtgatcggagggtgta 3851358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 15712210 - 15712266
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| ||||||| |||||||| | ||||| |||||||||||| ||||||||||||    
T  15712210 ttaattgaatgtatttaaaaagttgatttttgcttatattaatgatcggagggtgta 15712266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 23914892 - 23914836
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||||| ||||| ||||||||| ||  |||||||||||    
T  23914892 ttaattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgta 23914836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 19531390 - 19531447
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgtag 58  Q
    |||||| |||||||||||||||||  ||||| ||||||||| || ||||||| |||||    
T  19531390 ttaattgaatgtatctaaaaagtgaatttttgcttatattagtgatcggaggatgtag 19531447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 35969218 - 35969267
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcgga 50  Q
    |||||| |||||||||||||||||  ||||||||||||||| || |||||    
T  35969218 ttaattgaatgtatctaaaaagtgaatttttacttatattagtgatcgga 35969267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 3851452 - 3851508
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    ||||||||||||||||||||| ||  ||||| ||||||||| ||  |||||||||||    
T  3851452 ttaattaaatgtatctaaaaaatgaatttttgcttatattagtgaccggagggtgta 3851508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 13157384 - 13157328
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| ||| |||||||||||||| ||||| ||||||||||||  |||||| ||||    
T  13157384 ttaattgaatatatctaaaaagtggatttttgcttatattaatgaccggaggatgta 13157328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 15712172 - 15712116
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||| ||| ||||| ||||||||||||  ||||| |||||    
T  15712172 ttaattgaatgtatctaaaaaatggatttttgcttatattaatgaccggagagtgta 15712116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37870068 - 37870028
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatatta 41  Q
    |||||| |||||||||||||| ||||||||| |||||||||    
T  37870068 ttaattgaatgtatctaaaaaatggttttttgcttatatta 37870028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 52817656 - 52817714
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgtagt 59  Q
    |||||| |||||||||||||||||| ||||| ||||||||| ||  |||||||||||||    
T  52817656 ttaattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgtagt 52817714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5281224 - 5281280
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||||  ||||||||||||||| ||  |||||||||||    
T  5281224 ttaattgaatgtatctaaaaagtgaatttttacttatattagtgaccggagggtgta 5281280  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5418604 - 5418660
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| ||||||||||||||||   ||||| ||||||||| || ||||||||||||    
T  5418604 ttaattcaatgtatctaaaaagtaaatttttgcttatattagtgatcggagggtgta 5418660  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 38455209 - 38455160
Alignment:
Q  8 aatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||||||||||||||| ||||| ||||||||||||  |||||||||||    
T  38455209 aatgtatctaaaaagtggatttttgcttatattaatgaccggagggtgta 38455160  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 41254025 - 41254078
Alignment:
Q  6 taaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgtagt 59  Q
    ||||||||||||||| || | ||||| |||||| ||||| ||||||||||||||    
T  41254025 taaatgtatctaaaatgttgatttttgcttataataatgatcggagggtgtagt 41254078  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 52168379 - 52168428
Alignment:
Q  8 aatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||||||||||||||| ||||| ||||| ||||||  |||||||||||    
T  52168379 aatgtatctaaaaagtggatttttgcttatgttaatgaccggagggtgta 52168428  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 29565160 - 29565104
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    ||||||||||||||||||||| | | ||||| ||||||||| ||  |||||||||||    
T  29565160 ttaattaaatgtatctaaaaaattgatttttgcttatattagtgaccggagggtgta 29565104  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 33412554 - 33412594
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatatta 41  Q
    |||||| |||||||||||||||||| ||||| |||||||||    
T  33412554 ttaattgaatgtatctaaaaagtggatttttgcttatatta 33412594  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 36362693 - 36362748
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||| | ||||| ||||||||||||  |||||||||||    
T  36362693 ttaattgaatgtatctaaaaagtagatttttgcttatattaatg-acggagggtgta 36362748  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 42449156 - 42449116
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatatta 41  Q
    |||||| |||||||||||||||||| ||||| |||||||||    
T  42449156 ttaattgaatgtatctaaaaagtggatttttgcttatatta 42449116  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 50260984 - 50260928
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||||| ||||| ||||||||| |   |||||||||||    
T  50260984 ttaattgaatgtatctaaaaagtggatttttgcttatattagtaaccggagggtgta 50260928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 51617382 - 51617326
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||||| |||||  |||||||| ||  |||||||||||    
T  51617382 ttaattgaatgtatctaaaaagtggatttttggttatattagtgaccggagggtgta 51617326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 51617420 - 51617476
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| ||||||||||||||||||  |||| ||||||||| ||  |||||||||||    
T  51617420 ttaattgaatgtatctaaaaagtggaattttgcttatattagtgaccggagggtgta 51617476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 52168334 - 52168278
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||||||||||||||||||||   ||||| ||||||||| ||  |||||||||||    
T  52168334 ttaattaaatgtatctaaaaagtaaatttttgcttatattagtgaccggagggtgta 52168278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 52315479 - 52315535
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||||| ||||| |||||| || || |||||| |||||    
T  52315479 ttaattgaatgtatctaaaaagtggatttttgcttatactagtgatcggagagtgta 52315535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 52931762 - 52931818
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||| | ||||||||||||| | ||  |||||||||||    
T  52931762 ttaattgaatgtatctaaaaagtagatttttacttatatcagtgaccggagggtgta 52931818  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 9056110 - 9056166
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    ||||||||||||||||||||||||  ||||| ||||||||| ||  |||||||||||    
T  9056110 ttaattaaatgtatctaaaaagtgaatttttgcttatattagtgaccggagggtgta 9056166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 14381289 - 14381233
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||||| ||||| ||||||||| ||  |||||||||||    
T  14381289 ttaattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgta 14381233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 40098849 - 40098905
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||||| ||||| ||||||||| ||  |||||||||||    
T  40098849 ttaattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgta 40098905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 470
Target Start/End: Original strand, 17602932 - 17602994
Alignment:
Q  408 agcatcaatttgctaacaagaaacttatgacctagacgaggtacaactttgataagaatatct 470  Q
    ||||||||||||| ||||||||||| ||||| | | || || ||||||||| |||||||||||    
T  17602932 agcatcaatttgccaacaagaaactaatgacgtgggcgcggaacaactttggtaagaatatct 17602994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37716125 - 37716076
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcgga 50  Q
    |||||||||| |||||||||||||   ||||||||||||||||| |||||    
T  37716125 ttaattaaatatatctaaaaagtgaaattttacttatattaatgatcgga 37716076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 13211290 - 13211234
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    ||||||||||||||||||||| |   ||||||||||||||||||  | |||||||||    
T  13211290 ttaattaaatgtatctaaaaaataaatttttacttatattaatgaccagagggtgta 13211234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 13211328 - 13211384
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||| | | ||||||||||||||||||  |||||| ||||    
T  13211328 ttaattgaatgtatctaaaaaatagatttttacttatattaatgaccggaggatgta 13211384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 40098811 - 40098755
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||| | ||||| ||||||||| ||  |||||||||||    
T  40098811 ttaattgaatgtatctaaaaagtagatttttgcttatattagtgaccggagggtgta 40098755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 21506514 - 21506458
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||||| ||||| ||||||||| ||  |||||||||||    
T  21506514 ttaattgaatgtatctaaaaagtggatttttgcttatattagtgaccggagggtgta 21506458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 10258393 - 10258449
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||| |||||||||||  ||||||||||||| ||||| ||||||| ||||    
T  10258393 ttaattgaatgaatctaaaaagttattttttacttataataatgatcggaggatgta 10258449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 17773590 - 17773646
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||| | ||||| ||||||||| ||  |||||||||||    
T  17773590 ttaattgaatgtatctaaaaagtagatttttgcttatattagtgaccggagggtgta 17773646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 21998090 - 21998034
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||| ||  ||||| ||||||||| || ||||||||||||    
T  21998090 ttaattgaatgtatctaaaaaatgtatttttgcttatattagtgatcggagggtgta 21998034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 31536362 - 31536306
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||| |||||||||||||||||| | ||||| ||||||||| ||  |||||||||||    
T  31536362 ttaaataaatgtatctaaaaagttgatttttgcttatattagtgaccggagggtgta 31536306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 29498872 - 29498915
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatg 44  Q
    ||||||||||||||||||||| ||| ||||| ||||||||||||    
T  29498872 ttaattaaatgtatctaaaaaatggatttttgcttatattaatg 29498915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7430973 - 7431015
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaat 43  Q
    |||||| |||||||||||||||| |||||||| ||||||||||    
T  7430973 ttaattgaatgtatctaaaaagtagttttttatttatattaat 7431015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 34703532 - 34703588
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||||  ||||| ||||||||| ||  |||||||||||    
T  34703532 ttaattgaatgtatctaaaaagtgaatttttgcttatattagtgaccggagggtgta 34703588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38238873 - 38238929
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||| | ||||| ||||||||| ||  |||||||||||    
T  38238873 ttaattgaatgtatctaaaaagtagatttttgcttatattagtgaccggagggtgta 38238929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 246884 - 246940
Alignment:
Q  1 ttaattaaatgtatctaaaaagtggttttttacttatattaatgttcggagggtgta 57  Q
    |||||| |||||||||||||||| | ||||| ||||||||||||  | |||||||||    
T  246884 ttaattgaatgtatctaaaaagtagatttttgcttatattaatgaccagagggtgta 246940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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