View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9951_low_11 (Length: 388)

Name: NF9951_low_11
Description: NF9951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9951_low_11
NF9951_low_11
[»] chr5 (1 HSPs)
chr5 (79-368)||(42327166-42327455)


Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 79 - 368
Target Start/End: Complemental strand, 42327455 - 42327166
Alignment:
Q  79 gacaaaatgttaaggaagtttattaactaactattcaattccaatccatttataattttcatttcctttttctaaaggggtttatagtaaatgacgcaaa 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42327455 gacaaaatgttaaggaagtttattaactaactattcaattccaatccatttataattttcatttcctttttctaaaggggtttatagtaaatgacgcaaa 42327356  T
Q  179 tgaaatcagtattattatcaagttcataataaaacgaaatctttatttttccttttaagagggaatattgttttgtattttacgaagaaagggaatgttg 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42327355 tgaaatcagtattattatcaagttcataataaaacgaaatctttatttttccttttaagagggaatattgttttgtattttacgaagaaagggaatgttg 42327256  T
Q  279 ttttcaaatgatgaaataaatagcttaccttataagctcaaaaacgcgtacgcgtgtttcaatcaagctgtaacaaagacaccaacgtta 368  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42327255 ttttcaaatgatgaaataaatagctttccttataagctcaaaaacgcgtacgcgtgtttcaatcaagctgtaacaaagacaccaacgtta 42327166  T

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