View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9951_low_13 (Length: 362)
Name: NF9951_low_13
Description: NF9951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9951_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 53331971 - 53331640
Alignment:
| Q |
19 |
aaaaactggtatttctaactcttcttaaaatttgttgctgagtcgaatgaagaaaaatttattccaaatgttgcttgtttctaactcttaatgaaagtgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53331971 |
aaaaactggtatttctaactcttcttaaaatttgttgctgagtcgaatgaagaaaaatttattccaaatgttgcttgtttctaactcttaatgaaagtgt |
53331872 |
T |
|
| Q |
119 |
gataaaattattgaaacttaattttatatcttttagttttctctatttgtaattgttaaaatttagttatctttaagggcacaacctcccaatagtgtga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53331871 |
gataaaattattgaaacttaattttatatcttttagttttctctatttgtaattgttaaaatttagttatctttaagggcacaacctcccaatagtgtga |
53331772 |
T |
|
| Q |
219 |
agagtacttttcactagagattgactaggaacatccttccaactagaagcatattggagaggagatgaatggtcaaaaccactagttcatgaaatgtaaa |
318 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
53331771 |
agagtacttttcactagagattgagtaggaacatccttccaactagaagcatataggagaggagatgaatggtcaaaaccactagtttatgaaatgtaaa |
53331672 |
T |
|
| Q |
319 |
atggccaaccaagcatggttcacttccccctt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
53331671 |
atggccaaccaagcatggttcacttccccctt |
53331640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University